data_3X2S
#
_model_server_result.job_id            UZFlXaIaMxguw8qAOfVnZA 
_model_server_result.datetime_utc      '2025-03-11 10:49:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3x2s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":302}' 
#
_entry.id    3X2S 
#
_exptl.entry_id    3X2S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              273.329 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(pyren-1-ylmethyl)acetamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3X2S 
_cell.length_a            60.114 
_cell.length_b            58.992 
_cell.length_c            118.308 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3X2S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 55 A CYS 55 1_555 C C1 JPY . A JPY 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? 
covale ? covale2 A SG CYS 169 A CYS 169 1_555 D C1 JPY . A JPY 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? 
covale ? covale3 B SG CYS 55 B CYS 55 1_555 G C1 JPY . B JPY 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.785 ? 
covale ? covale4 B SG CYS 169 B CYS 169 1_555 H C1 JPY . B JPY 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? 
metalc ? metalc1 E O1D AP5 . A AP5 303 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
metalc ? metalc2 E O2G AP5 . A AP5 303 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? 
metalc ? metalc3 E O3D AP5 . A AP5 303 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.955 ? 
metalc ? metalc4 F MG MG . A MG 304 1_555 K O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc5 F MG MG . A MG 304 1_555 K O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc6 F MG MG . A MG 304 1_555 K O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc7 F MG MG . A MG 304 1_555 K O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc8 I O1D AP5 . B AP5 303 1_555 J MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? 
metalc ? metalc9 I O2G AP5 . B AP5 303 1_555 J MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc10 J MG MG . B MG 304 1_555 L O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc11 J MG MG . B MG 304 1_555 L O HOH . B HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc12 J MG MG . B MG 304 1_555 L O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? 
metalc ? metalc13 J MG MG . B MG 304 1_555 L O HOH . B HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? 
#
_chem_comp.formula           'C19 H15 N O' 
_chem_comp.formula_weight    273.329 
_chem_comp.id                JPY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(pyren-1-ylmethyl)acetamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C17 C18 JPY doub 264 n y 
C17 C16 JPY sing 265 n y 
C18 C9 JPY sing 266 n y 
C15 C16 JPY doub 267 n y 
C15 C14 JPY sing 268 n y 
C16 C11 JPY sing 269 n y 
C9 C8 JPY doub 270 n y 
C9 C10 JPY sing 271 n y 
C8 C7 JPY sing 272 n y 
C14 C13 JPY doub 273 n y 
C11 C10 JPY doub 274 n y 
C11 C12 JPY sing 275 n y 
C10 C21 JPY sing 276 n y 
C7 C6 JPY doub 277 n y 
C13 C12 JPY sing 278 n y 
C12 C19 JPY doub 279 n y 
C21 C6 JPY sing 280 n y 
C21 C20 JPY doub 281 n y 
C6 C5 JPY sing 282 n n 
C19 C20 JPY sing 283 n y 
C5 N1 JPY sing 284 n n 
N1 C4 JPY sing 285 n n 
C4 O2 JPY doub 286 n n 
C4 C1 JPY sing 287 n n 
C1 H1 JPY sing 288 n n 
C1 H2 JPY sing 289 n n 
C1 H3 JPY sing 290 n n 
N1 H4 JPY sing 291 n n 
C5 H5 JPY sing 292 n n 
C5 H6 JPY sing 293 n n 
C20 H7 JPY sing 294 n n 
C19 H8 JPY sing 295 n n 
C13 H9 JPY sing 296 n n 
C14 H10 JPY sing 297 n n 
C15 H11 JPY sing 298 n n 
C17 H12 JPY sing 299 n n 
C18 H13 JPY sing 300 n n 
C8 H14 JPY sing 301 n n 
C7 H15 JPY sing 302 n n 
#
_atom_sites.entry_id                     3X2S 
_atom_sites.fract_transf_matrix[1][1]    0.016635 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016951 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008453 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 JPY A 1 301 55 JPY CPY . 
D 2 JPY A 1 302 169 JPY CPY . 
E 3 AP5 A 1 303 1 AP5 AP5 . 
F 4 MG A 1 304 1 MG MG2 . 
G 2 JPY B 1 301 55 JPY CPY . 
H 2 JPY B 1 302 169 JPY CPY . 
I 3 AP5 B 1 303 2 AP5 AP5 . 
J 4 MG B 1 304 2 MG MG2 . 
K 5 HOH A 1 401 1 HOH HOH . 
K 5 HOH A 2 402 6 HOH HOH . 
K 5 HOH A 3 403 8 HOH HOH . 
K 5 HOH A 4 404 9 HOH HOH . 
K 5 HOH A 5 405 10 HOH HOH . 
K 5 HOH A 6 406 11 HOH HOH . 
K 5 HOH A 7 407 12 HOH HOH . 
K 5 HOH A 8 408 13 HOH HOH . 
K 5 HOH A 9 409 14 HOH HOH . 
K 5 HOH A 10 410 15 HOH HOH . 
K 5 HOH A 11 411 26 HOH HOH . 
K 5 HOH A 12 412 27 HOH HOH . 
L 5 HOH B 1 401 2 HOH HOH . 
L 5 HOH B 2 402 3 HOH HOH . 
L 5 HOH B 3 403 4 HOH HOH . 
L 5 HOH B 4 404 5 HOH HOH . 
L 5 HOH B 5 405 7 HOH HOH . 
L 5 HOH B 6 406 16 HOH HOH . 
L 5 HOH B 7 407 17 HOH HOH . 
L 5 HOH B 8 408 18 HOH HOH . 
L 5 HOH B 9 409 19 HOH HOH . 
L 5 HOH B 10 410 20 HOH HOH . 
L 5 HOH B 11 411 21 HOH HOH . 
L 5 HOH B 12 412 22 HOH HOH . 
L 5 HOH B 13 413 23 HOH HOH . 
L 5 HOH B 14 414 24 HOH HOH . 
L 5 HOH B 15 415 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 JPY . . . H 2 40.042 32.095 18.416 1 55.55 ? C1 JPY 302 B 1 
HETATM 2 C C4 JPY . . . H 2 41.519 32.091 18.099 1 59.08 ? C4 JPY 302 B 1 
HETATM 3 O O2 JPY . . . H 2 41.915 31.592 17.059 1 59.25 ? O2 JPY 302 B 1 
HETATM 4 N N1 JPY . . . H 2 42.346 32.638 18.993 1 61.92 ? N1 JPY 302 B 1 
HETATM 5 C C5 JPY . . . H 2 43.685 33.065 18.611 1 64.6 ? C5 JPY 302 B 1 
HETATM 6 C C6 JPY . . . H 2 44.772 32.311 19.376 1 66.61 ? C6 JPY 302 B 1 
HETATM 7 C C21 JPY . . . H 2 46.207 32.338 18.878 1 66.8 ? C21 JPY 302 B 1 
HETATM 8 C C10 JPY . . . H 2 47.199 31.576 19.708 1 67.4 ? C10 JPY 302 B 1 
HETATM 9 C C20 JPY . . . H 2 46.662 33.016 17.706 1 67.19 ? C20 JPY 302 B 1 
HETATM 10 C C19 JPY . . . H 2 48.035 32.996 17.301 1 69.1 ? C19 JPY 302 B 1 
HETATM 11 C C12 JPY . . . H 2 49.034 32.298 18.046 1 69.44 ? C12 JPY 302 B 1 
HETATM 12 C C13 JPY . . . H 2 50.409 32.246 17.694 1 70.12 ? C13 JPY 302 B 1 
HETATM 13 C C14 JPY . . . H 2 51.346 31.523 18.498 1 69.8 ? C14 JPY 302 B 1 
HETATM 14 C C15 JPY . . . H 2 50.972 30.814 19.684 1 69.36 ? C15 JPY 302 B 1 
HETATM 15 C C16 JPY . . . H 2 49.623 30.8 20.127 1 69.3 ? C16 JPY 302 B 1 
HETATM 16 C C11 JPY . . . H 2 48.622 31.557 19.292 1 68.85 ? C11 JPY 302 B 1 
HETATM 17 C C17 JPY . . . H 2 49.166 30.12 21.29 1 68.28 ? C17 JPY 302 B 1 
HETATM 18 C C18 JPY . . . H 2 47.79 30.14 21.686 1 67.79 ? C18 JPY 302 B 1 
HETATM 19 C C9 JPY . . . H 2 46.793 30.838 20.949 1 67.58 ? C9 JPY 302 B 1 
HETATM 20 C C8 JPY . . . H 2 45.43 30.87 21.322 1 67.53 ? C8 JPY 302 B 1 
HETATM 21 C C7 JPY . . . H 2 44.46 31.582 20.568 1 66.78 ? C7 JPY 302 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#