data_3X2T
#
_model_server_result.job_id            2sG7YBNQC5LJvMTXdgyhNQ 
_model_server_result.datetime_utc      '2025-03-04 16:09:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3x2t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2000}' 
#
_entry.id    3X2T 
#
_exptl.entry_id    3X2T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3X2T 
_cell.length_a            71.858 
_cell.length_b            71.827 
_cell.length_c            176.891 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3X2T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     3X2T 
_atom_sites.fract_transf_matrix[1][1]    0.013916 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013922 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005653 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 2000 2000 ADP ADP . 
D 2 ADP B 1 2000 2000 ADP ADP . 
E 3 HOH A 1 2101 3 HOH HOH . 
E 3 HOH A 2 2102 4 HOH HOH . 
F 3 HOH B 1 2101 1 HOH HOH . 
F 3 HOH B 2 2102 2 HOH HOH . 
F 3 HOH B 3 2103 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . D 2 62.792 -55.398 69.29 1 55.53 ? PB ADP 2000 B 1 
HETATM 2 O O1B ADP . . . D 2 63.278 -56.044 68.04 1 55.55 ? O1B ADP 2000 B 1 
HETATM 3 O O2B ADP . . . D 2 63.385 -54.051 69.606 1 61.31 ? O2B ADP 2000 B 1 
HETATM 4 O O3B ADP . . . D 2 61.301 -55.546 69.461 1 63.34 ? O3B ADP 2000 B 1 
HETATM 5 P PA ADP . . . D 2 62.866 -57.761 70.732 1 114.61 ? PA ADP 2000 B 1 
HETATM 6 O O1A ADP . . . D 2 61.945 -57.604 71.936 1 85.99 ? O1A ADP 2000 B 1 
HETATM 7 O O2A ADP . . . D 2 62.41 -58.372 69.416 1 92.2 ? O2A ADP 2000 B 1 
HETATM 8 O O3A ADP . . . D 2 63.46 -56.291 70.429 1 80.77 ? O3A ADP 2000 B 1 
HETATM 9 O O5' ADP . . . D 2 64.206 -58.546 71.198 1 124.48 ? O5' ADP 2000 B 1 
HETATM 10 C C5' ADP . . . D 2 64.384 -59.949 70.976 1 126.39 ? C5' ADP 2000 B 1 
HETATM 11 C C4' ADP . . . D 2 64.661 -60.685 72.289 1 120.03 ? C4' ADP 2000 B 1 
HETATM 12 O O4' ADP . . . D 2 65.4 -59.897 73.237 1 106.81 ? O4' ADP 2000 B 1 
HETATM 13 C C3' ADP . . . D 2 63.372 -61.095 72.999 1 120.03 ? C3' ADP 2000 B 1 
HETATM 14 O O3' ADP . . . D 2 62.896 -62.35 72.49 1 106.96 ? O3' ADP 2000 B 1 
HETATM 15 C C2' ADP . . . D 2 63.733 -61.069 74.493 1 119.33 ? C2' ADP 2000 B 1 
HETATM 16 O O2' ADP . . . D 2 63.765 -62.356 75.144 1 105.67 ? O2' ADP 2000 B 1 
HETATM 17 C C1' ADP . . . D 2 65.114 -60.397 74.553 1 113.35 ? C1' ADP 2000 B 1 
HETATM 18 N N9 ADP . . . D 2 65.123 -59.3 75.562 1 111.95 ? N9 ADP 2000 B 1 
HETATM 19 C C8 ADP . . . D 2 64.921 -57.993 75.284 1 107.9 ? C8 ADP 2000 B 1 
HETATM 20 N N7 ADP . . . D 2 64.973 -57.221 76.406 1 99.22 ? N7 ADP 2000 B 1 
HETATM 21 C C5 ADP . . . D 2 65.215 -58.056 77.433 1 108.31 ? C5 ADP 2000 B 1 
HETATM 22 C C6 ADP . . . D 2 65.393 -57.88 78.895 1 113.28 ? C6 ADP 2000 B 1 
HETATM 23 N N6 ADP . . . D 2 65.314 -56.622 79.419 1 101.45 ? N6 ADP 2000 B 1 
HETATM 24 N N1 ADP . . . D 2 65.637 -59.009 79.637 1 113.3 ? N1 ADP 2000 B 1 
HETATM 25 C C2 ADP . . . D 2 65.709 -60.246 79.069 1 110.5 ? C2 ADP 2000 B 1 
HETATM 26 N N3 ADP . . . D 2 65.553 -60.472 77.74 1 98.18 ? N3 ADP 2000 B 1 
HETATM 27 C C4 ADP . . . D 2 65.313 -59.433 76.887 1 107.4 ? C4 ADP 2000 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#