data_3X2U # _model_server_result.job_id E4IMgjthI5tak3TTI_BV-g _model_server_result.datetime_utc '2024-10-13 10:21:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3x2u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 3X2U # _exptl.entry_id 3X2U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3X2U _cell.length_a 71.66 _cell.length_b 74.68 _cell.length_c 79.91 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3X2U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 145 A PHE 138 1_555 A N SEP 146 A SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C SEP 146 A SEP 139 1_555 A N GLU 147 A GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C TRP 203 A TRP 196 1_555 A N TPO 204 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C TPO 204 A TPO 197 1_555 A N LEU 205 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C VAL 344 A VAL 337 1_555 A N SEP 345 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C SEP 345 A SEP 338 1_555 A N ILE 346 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A OD1 ASN 178 A ASN 171 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc2 A OD2 ASP 191 A ASP 184 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? metalc ? metalc3 A OD1 ASP 191 A ASP 184 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc4 A OD2 ASP 191 A ASP 184 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc5 C O3G ATP . A ATP 501 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? metalc ? metalc6 C O1B ATP . A ATP 501 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc7 C O2G ATP . A ATP 501 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc8 C O2A ATP . A ATP 501 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc9 C O2G ATP . A ATP 501 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc10 C O3B ATP . A ATP 501 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc11 D MG MG . A MG 502 1_555 F O HOH . A HOH 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc12 E MG MG . A MG 503 1_555 F O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3X2U _atom_sites.fract_transf_matrix[1][1] 0.013955 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01339 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012514 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ATP A 1 501 501 ATP ATP . D 4 MG A 1 502 1 MG MG . E 4 MG A 1 503 1 MG MG . F 5 HOH A 1 601 1 HOH HOH . F 5 HOH A 2 602 3 HOH HOH . F 5 HOH A 3 603 4 HOH HOH . F 5 HOH A 4 604 6 HOH HOH . F 5 HOH A 5 605 7 HOH HOH . F 5 HOH A 6 606 8 HOH HOH . F 5 HOH A 7 607 9 HOH HOH . F 5 HOH A 8 608 10 HOH HOH . F 5 HOH A 9 609 11 HOH HOH . F 5 HOH A 10 610 12 HOH HOH . F 5 HOH A 11 611 13 HOH HOH . F 5 HOH A 12 612 14 HOH HOH . F 5 HOH A 13 613 15 HOH HOH . F 5 HOH A 14 614 16 HOH HOH . F 5 HOH A 15 615 17 HOH HOH . F 5 HOH A 16 616 19 HOH HOH . F 5 HOH A 17 617 20 HOH HOH . F 5 HOH A 18 618 21 HOH HOH . F 5 HOH A 19 619 23 HOH HOH . F 5 HOH A 20 620 24 HOH HOH . F 5 HOH A 21 621 25 HOH HOH . F 5 HOH A 22 622 26 HOH HOH . F 5 HOH A 23 623 27 HOH HOH . F 5 HOH A 24 624 28 HOH HOH . F 5 HOH A 25 625 29 HOH HOH . F 5 HOH A 26 626 30 HOH HOH . F 5 HOH A 27 627 31 HOH HOH . F 5 HOH A 28 628 32 HOH HOH . F 5 HOH A 29 629 34 HOH HOH . F 5 HOH A 30 630 35 HOH HOH . F 5 HOH A 31 631 36 HOH HOH . F 5 HOH A 32 632 37 HOH HOH . F 5 HOH A 33 633 38 HOH HOH . F 5 HOH A 34 634 39 HOH HOH . F 5 HOH A 35 635 40 HOH HOH . F 5 HOH A 36 636 41 HOH HOH . F 5 HOH A 37 637 42 HOH HOH . F 5 HOH A 38 638 44 HOH HOH . F 5 HOH A 39 639 45 HOH HOH . F 5 HOH A 40 640 46 HOH HOH . F 5 HOH A 41 641 47 HOH HOH . F 5 HOH A 42 642 48 HOH HOH . F 5 HOH A 43 643 49 HOH HOH . F 5 HOH A 44 644 50 HOH HOH . F 5 HOH A 45 645 51 HOH HOH . F 5 HOH A 46 646 52 HOH HOH . F 5 HOH A 47 647 53 HOH HOH . F 5 HOH A 48 648 54 HOH HOH . F 5 HOH A 49 649 55 HOH HOH . F 5 HOH A 50 650 56 HOH HOH . F 5 HOH A 51 651 59 HOH HOH . F 5 HOH A 52 652 60 HOH HOH . F 5 HOH A 53 653 61 HOH HOH . F 5 HOH A 54 654 62 HOH HOH . F 5 HOH A 55 655 63 HOH HOH . F 5 HOH A 56 656 64 HOH HOH . F 5 HOH A 57 657 65 HOH HOH . F 5 HOH A 58 658 66 HOH HOH . F 5 HOH A 59 659 67 HOH HOH . F 5 HOH A 60 660 69 HOH HOH . F 5 HOH A 61 661 70 HOH HOH . F 5 HOH A 62 662 71 HOH HOH . F 5 HOH A 63 663 72 HOH HOH . F 5 HOH A 64 664 73 HOH HOH . F 5 HOH A 65 665 76 HOH HOH . F 5 HOH A 66 666 77 HOH HOH . F 5 HOH A 67 667 79 HOH HOH . F 5 HOH A 68 668 82 HOH HOH . F 5 HOH A 69 669 83 HOH HOH . F 5 HOH A 70 670 84 HOH HOH . F 5 HOH A 71 671 86 HOH HOH . F 5 HOH A 72 672 88 HOH HOH . F 5 HOH A 73 673 89 HOH HOH . F 5 HOH A 74 674 90 HOH HOH . F 5 HOH A 75 675 91 HOH HOH . F 5 HOH A 76 676 92 HOH HOH . F 5 HOH A 77 677 93 HOH HOH . F 5 HOH A 78 678 94 HOH HOH . F 5 HOH A 79 679 95 HOH HOH . F 5 HOH A 80 680 96 HOH HOH . F 5 HOH A 81 681 97 HOH HOH . F 5 HOH A 82 682 98 HOH HOH . F 5 HOH A 83 683 99 HOH HOH . F 5 HOH A 84 684 100 HOH HOH . F 5 HOH A 85 685 101 HOH HOH . F 5 HOH A 86 686 102 HOH HOH . F 5 HOH A 87 687 103 HOH HOH . F 5 HOH A 88 688 104 HOH HOH . F 5 HOH A 89 689 105 HOH HOH . F 5 HOH A 90 690 106 HOH HOH . F 5 HOH A 91 691 107 HOH HOH . F 5 HOH A 92 692 108 HOH HOH . F 5 HOH A 93 693 110 HOH HOH . F 5 HOH A 94 694 111 HOH HOH . F 5 HOH A 95 695 118 HOH HOH . F 5 HOH A 96 696 120 HOH HOH . F 5 HOH A 97 697 122 HOH HOH . F 5 HOH A 98 698 123 HOH HOH . F 5 HOH A 99 699 124 HOH HOH . F 5 HOH A 100 700 125 HOH HOH . F 5 HOH A 101 701 126 HOH HOH . F 5 HOH A 102 702 127 HOH HOH . F 5 HOH A 103 703 128 HOH HOH . F 5 HOH A 104 704 129 HOH HOH . F 5 HOH A 105 705 130 HOH HOH . F 5 HOH A 106 706 131 HOH HOH . F 5 HOH A 107 707 132 HOH HOH . F 5 HOH A 108 708 133 HOH HOH . F 5 HOH A 109 709 134 HOH HOH . F 5 HOH A 110 710 135 HOH HOH . F 5 HOH A 111 711 136 HOH HOH . F 5 HOH A 112 712 138 HOH HOH . F 5 HOH A 113 713 140 HOH HOH . F 5 HOH A 114 714 141 HOH HOH . F 5 HOH A 115 715 142 HOH HOH . F 5 HOH A 116 716 143 HOH HOH . F 5 HOH A 117 717 144 HOH HOH . F 5 HOH A 118 718 147 HOH HOH . F 5 HOH A 119 719 148 HOH HOH . F 5 HOH A 120 720 149 HOH HOH . F 5 HOH A 121 721 150 HOH HOH . F 5 HOH A 122 722 152 HOH HOH . F 5 HOH A 123 723 154 HOH HOH . F 5 HOH A 124 724 155 HOH HOH . F 5 HOH A 125 725 158 HOH HOH . F 5 HOH A 126 726 159 HOH HOH . F 5 HOH A 127 727 160 HOH HOH . F 5 HOH A 128 728 161 HOH HOH . F 5 HOH A 129 729 162 HOH HOH . F 5 HOH A 130 730 163 HOH HOH . F 5 HOH A 131 731 166 HOH HOH . F 5 HOH A 132 732 167 HOH HOH . F 5 HOH A 133 733 168 HOH HOH . F 5 HOH A 134 734 169 HOH HOH . F 5 HOH A 135 735 170 HOH HOH . F 5 HOH A 136 736 171 HOH HOH . F 5 HOH A 137 737 172 HOH HOH . F 5 HOH A 138 738 173 HOH HOH . F 5 HOH A 139 739 174 HOH HOH . F 5 HOH A 140 740 175 HOH HOH . F 5 HOH A 141 741 176 HOH HOH . F 5 HOH A 142 742 177 HOH HOH . F 5 HOH A 143 743 178 HOH HOH . F 5 HOH A 144 744 179 HOH HOH . F 5 HOH A 145 745 180 HOH HOH . F 5 HOH A 146 746 181 HOH HOH . F 5 HOH A 147 747 182 HOH HOH . F 5 HOH A 148 748 183 HOH HOH . F 5 HOH A 149 749 184 HOH HOH . F 5 HOH A 150 750 185 HOH HOH . F 5 HOH A 151 751 186 HOH HOH . F 5 HOH A 152 752 187 HOH HOH . F 5 HOH A 153 753 188 HOH HOH . F 5 HOH A 154 754 189 HOH HOH . F 5 HOH A 155 755 190 HOH HOH . F 5 HOH A 156 756 192 HOH HOH . F 5 HOH A 157 757 193 HOH HOH . F 5 HOH A 158 758 194 HOH HOH . F 5 HOH A 159 759 196 HOH HOH . F 5 HOH A 160 760 197 HOH HOH . F 5 HOH A 161 761 203 HOH HOH . F 5 HOH A 162 762 204 HOH HOH . F 5 HOH A 163 763 205 HOH HOH . F 5 HOH A 164 764 206 HOH HOH . F 5 HOH A 165 765 207 HOH HOH . F 5 HOH A 166 766 209 HOH HOH . F 5 HOH A 167 767 210 HOH HOH . F 5 HOH A 168 768 211 HOH HOH . F 5 HOH A 169 769 212 HOH HOH . F 5 HOH A 170 770 213 HOH HOH . F 5 HOH A 171 771 214 HOH HOH . F 5 HOH A 172 772 215 HOH HOH . F 5 HOH A 173 773 216 HOH HOH . F 5 HOH A 174 774 217 HOH HOH . F 5 HOH A 175 775 218 HOH HOH . F 5 HOH A 176 776 219 HOH HOH . F 5 HOH A 177 777 220 HOH HOH . F 5 HOH A 178 778 221 HOH HOH . F 5 HOH A 179 779 222 HOH HOH . F 5 HOH A 180 780 223 HOH HOH . G 5 HOH S 1 701 2 HOH HOH . G 5 HOH S 2 702 5 HOH HOH . G 5 HOH S 3 703 18 HOH HOH . G 5 HOH S 4 704 22 HOH HOH . G 5 HOH S 5 705 33 HOH HOH . G 5 HOH S 6 706 43 HOH HOH . G 5 HOH S 7 707 57 HOH HOH . G 5 HOH S 8 708 58 HOH HOH . G 5 HOH S 9 709 74 HOH HOH . G 5 HOH S 10 710 75 HOH HOH . G 5 HOH S 11 711 78 HOH HOH . G 5 HOH S 12 712 109 HOH HOH . G 5 HOH S 13 713 119 HOH HOH . G 5 HOH S 14 714 121 HOH HOH . G 5 HOH S 15 715 146 HOH HOH . G 5 HOH S 16 716 191 HOH HOH . G 5 HOH S 17 717 208 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x -22.832 _atom_site.Cartn_y -6.923 _atom_site.Cartn_z -0.413 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 50.59 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 503 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #