data_3X2Y
#
_model_server_result.job_id            bWUwf6Cs5sd0K4K00R46BA 
_model_server_result.datetime_utc      '2024-11-26 17:12:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3x2y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    3X2Y 
#
_exptl.entry_id    3X2Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3X2Y 
_cell.length_a            143.883 
_cell.length_b            143.883 
_cell.length_c            149.844 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3X2Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 49 A HIS 48 1_555 D NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc2 A ND1 HIS 51 A HIS 50 1_555 D NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc3 A NE2 HIS 109 A HIS 108 1_555 D NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc4 A OD2 ASP 142 A ASP 141 1_555 D NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc5 B NE2 HIS 49 B HIS 48 1_555 E NI NI . B NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc6 B ND1 HIS 51 B HIS 50 1_555 E NI NI . B NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc7 B NE2 HIS 109 B HIS 108 1_555 E NI NI . B NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc8 B OD2 ASP 142 B ASP 141 1_555 E NI NI . B NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc9 C NE2 HIS 49 C HIS 48 1_555 F NI NI . C NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc10 C ND1 HIS 51 C HIS 50 1_555 F NI NI . C NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc11 C NE2 HIS 109 C HIS 108 1_555 F NI NI . C NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc12 C OD2 ASP 142 C ASP 141 1_555 F NI NI . C NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3X2Y 
_atom_sites.fract_transf_matrix[1][1]    0.00695 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00695 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006674 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 NI A 1 301 230 NI NI . 
E 2 NI B 1 301 230 NI NI . 
F 2 NI C 1 301 230 NI NI . 
G 3 HOH A 1 401 2 HOH HOH . 
G 3 HOH A 2 402 3 HOH HOH . 
G 3 HOH A 3 403 6 HOH HOH . 
G 3 HOH A 4 404 11 HOH HOH . 
G 3 HOH A 5 405 13 HOH HOH . 
G 3 HOH A 6 406 18 HOH HOH . 
G 3 HOH A 7 407 19 HOH HOH . 
G 3 HOH A 8 408 20 HOH HOH . 
G 3 HOH A 9 409 23 HOH HOH . 
G 3 HOH A 10 410 24 HOH HOH . 
G 3 HOH A 11 411 26 HOH HOH . 
G 3 HOH A 12 412 27 HOH HOH . 
G 3 HOH A 13 413 33 HOH HOH . 
G 3 HOH A 14 414 37 HOH HOH . 
G 3 HOH A 15 415 43 HOH HOH . 
G 3 HOH A 16 416 48 HOH HOH . 
G 3 HOH A 17 417 49 HOH HOH . 
G 3 HOH A 18 418 55 HOH HOH . 
G 3 HOH A 19 419 59 HOH HOH . 
G 3 HOH A 20 420 63 HOH HOH . 
G 3 HOH A 21 421 64 HOH HOH . 
G 3 HOH A 22 422 67 HOH HOH . 
G 3 HOH A 23 423 68 HOH HOH . 
G 3 HOH A 24 424 73 HOH HOH . 
G 3 HOH A 25 425 75 HOH HOH . 
G 3 HOH A 26 426 76 HOH HOH . 
G 3 HOH A 27 427 78 HOH HOH . 
G 3 HOH A 28 428 88 HOH HOH . 
G 3 HOH A 29 429 89 HOH HOH . 
G 3 HOH A 30 430 92 HOH HOH . 
G 3 HOH A 31 431 94 HOH HOH . 
G 3 HOH A 32 432 96 HOH HOH . 
G 3 HOH A 33 433 97 HOH HOH . 
G 3 HOH A 34 434 99 HOH HOH . 
G 3 HOH A 35 435 100 HOH HOH . 
G 3 HOH A 36 436 104 HOH HOH . 
G 3 HOH A 37 437 105 HOH HOH . 
G 3 HOH A 38 438 106 HOH HOH . 
G 3 HOH A 39 439 110 HOH HOH . 
G 3 HOH A 40 440 111 HOH HOH . 
G 3 HOH A 41 441 113 HOH HOH . 
G 3 HOH A 42 442 117 HOH HOH . 
G 3 HOH A 43 443 119 HOH HOH . 
G 3 HOH A 44 444 121 HOH HOH . 
G 3 HOH A 45 445 122 HOH HOH . 
G 3 HOH A 46 446 123 HOH HOH . 
G 3 HOH A 47 447 125 HOH HOH . 
G 3 HOH A 48 448 126 HOH HOH . 
G 3 HOH A 49 449 127 HOH HOH . 
G 3 HOH A 50 450 128 HOH HOH . 
G 3 HOH A 51 451 129 HOH HOH . 
G 3 HOH A 52 452 131 HOH HOH . 
G 3 HOH A 53 453 134 HOH HOH . 
G 3 HOH A 54 454 138 HOH HOH . 
G 3 HOH A 55 455 141 HOH HOH . 
G 3 HOH A 56 456 146 HOH HOH . 
G 3 HOH A 57 457 147 HOH HOH . 
H 3 HOH B 1 401 1 HOH HOH . 
H 3 HOH B 2 402 5 HOH HOH . 
H 3 HOH B 3 403 7 HOH HOH . 
H 3 HOH B 4 404 8 HOH HOH . 
H 3 HOH B 5 405 9 HOH HOH . 
H 3 HOH B 6 406 10 HOH HOH . 
H 3 HOH B 7 407 14 HOH HOH . 
H 3 HOH B 8 408 15 HOH HOH . 
H 3 HOH B 9 409 17 HOH HOH . 
H 3 HOH B 10 410 22 HOH HOH . 
H 3 HOH B 11 411 25 HOH HOH . 
H 3 HOH B 12 412 28 HOH HOH . 
H 3 HOH B 13 413 29 HOH HOH . 
H 3 HOH B 14 414 34 HOH HOH . 
H 3 HOH B 15 415 35 HOH HOH . 
H 3 HOH B 16 416 38 HOH HOH . 
H 3 HOH B 17 417 40 HOH HOH . 
H 3 HOH B 18 418 44 HOH HOH . 
H 3 HOH B 19 419 45 HOH HOH . 
H 3 HOH B 20 420 46 HOH HOH . 
H 3 HOH B 21 421 51 HOH HOH . 
H 3 HOH B 22 422 53 HOH HOH . 
H 3 HOH B 23 423 54 HOH HOH . 
H 3 HOH B 24 424 57 HOH HOH . 
H 3 HOH B 25 425 61 HOH HOH . 
H 3 HOH B 26 426 62 HOH HOH . 
H 3 HOH B 27 427 66 HOH HOH . 
H 3 HOH B 28 428 72 HOH HOH . 
H 3 HOH B 29 429 74 HOH HOH . 
H 3 HOH B 30 430 79 HOH HOH . 
H 3 HOH B 31 431 81 HOH HOH . 
H 3 HOH B 32 432 83 HOH HOH . 
H 3 HOH B 33 433 86 HOH HOH . 
H 3 HOH B 34 434 95 HOH HOH . 
H 3 HOH B 35 435 98 HOH HOH . 
H 3 HOH B 36 436 101 HOH HOH . 
H 3 HOH B 37 437 107 HOH HOH . 
H 3 HOH B 38 438 108 HOH HOH . 
H 3 HOH B 39 439 114 HOH HOH . 
H 3 HOH B 40 440 115 HOH HOH . 
H 3 HOH B 41 441 116 HOH HOH . 
H 3 HOH B 42 442 118 HOH HOH . 
H 3 HOH B 43 443 130 HOH HOH . 
H 3 HOH B 44 444 132 HOH HOH . 
H 3 HOH B 45 445 136 HOH HOH . 
H 3 HOH B 46 446 139 HOH HOH . 
H 3 HOH B 47 447 140 HOH HOH . 
H 3 HOH B 48 448 142 HOH HOH . 
H 3 HOH B 49 449 145 HOH HOH . 
I 3 HOH C 1 401 4 HOH HOH . 
I 3 HOH C 2 402 12 HOH HOH . 
I 3 HOH C 3 403 16 HOH HOH . 
I 3 HOH C 4 404 21 HOH HOH . 
I 3 HOH C 5 405 30 HOH HOH . 
I 3 HOH C 6 406 31 HOH HOH . 
I 3 HOH C 7 407 32 HOH HOH . 
I 3 HOH C 8 408 36 HOH HOH . 
I 3 HOH C 9 409 39 HOH HOH . 
I 3 HOH C 10 410 41 HOH HOH . 
I 3 HOH C 11 411 42 HOH HOH . 
I 3 HOH C 12 412 47 HOH HOH . 
I 3 HOH C 13 413 50 HOH HOH . 
I 3 HOH C 14 414 52 HOH HOH . 
I 3 HOH C 15 415 56 HOH HOH . 
I 3 HOH C 16 416 58 HOH HOH . 
I 3 HOH C 17 417 60 HOH HOH . 
I 3 HOH C 18 418 65 HOH HOH . 
I 3 HOH C 19 419 69 HOH HOH . 
I 3 HOH C 20 420 70 HOH HOH . 
I 3 HOH C 21 421 71 HOH HOH . 
I 3 HOH C 22 422 77 HOH HOH . 
I 3 HOH C 23 423 80 HOH HOH . 
I 3 HOH C 24 424 82 HOH HOH . 
I 3 HOH C 25 425 84 HOH HOH . 
I 3 HOH C 26 426 85 HOH HOH . 
I 3 HOH C 27 427 87 HOH HOH . 
I 3 HOH C 28 428 90 HOH HOH . 
I 3 HOH C 29 429 91 HOH HOH . 
I 3 HOH C 30 430 93 HOH HOH . 
I 3 HOH C 31 431 102 HOH HOH . 
I 3 HOH C 32 432 103 HOH HOH . 
I 3 HOH C 33 433 109 HOH HOH . 
I 3 HOH C 34 434 112 HOH HOH . 
I 3 HOH C 35 435 120 HOH HOH . 
I 3 HOH C 36 436 124 HOH HOH . 
I 3 HOH C 37 437 133 HOH HOH . 
I 3 HOH C 38 438 135 HOH HOH . 
I 3 HOH C 39 439 137 HOH HOH . 
I 3 HOH C 40 440 143 HOH HOH . 
I 3 HOH C 41 441 144 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -2.002 
_atom_site.Cartn_y               21.887 
_atom_site.Cartn_z               20.646 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        33.28 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#