data_3X3B # _model_server_result.job_id cAkgVgJjoa2B0tWZm6uPog _model_server_result.datetime_utc '2024-11-08 03:09:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3x3b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 3X3B # _exptl.entry_id 3X3B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3X3B _cell.length_a 40.582 _cell.length_b 81.544 _cell.length_c 233.775 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3X3B _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_885 -x+3,-y+3,z -1 0 0 0 -1 0 0 0 1 121.746 244.632 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 255 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.447 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 277 n n C1 C2 PEG sing 278 n n C1 H11 PEG sing 279 n n C1 H12 PEG sing 280 n n O1 HO1 PEG sing 281 n n C2 O2 PEG sing 282 n n C2 H21 PEG sing 283 n n C2 H22 PEG sing 284 n n O2 C3 PEG sing 285 n n C3 C4 PEG sing 286 n n C3 H31 PEG sing 287 n n C3 H32 PEG sing 288 n n C4 O4 PEG sing 289 n n C4 H41 PEG sing 290 n n C4 H42 PEG sing 291 n n O4 HO4 PEG sing 292 n n # _atom_sites.entry_id 3X3B _atom_sites.fract_transf_matrix[1][1] 0.024641 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012263 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 501 501 RET RET . C 3 OLA A 1 502 601 OLA OLA . D 3 OLA A 1 503 602 OLA OLA . E 3 OLA A 1 504 603 OLA OLA . F 4 PEG A 1 505 701 PEG PEG . G 5 HOH A 1 901 901 HOH HOH . G 5 HOH A 2 902 902 HOH HOH . G 5 HOH A 3 903 903 HOH HOH . G 5 HOH A 4 904 904 HOH HOH . G 5 HOH A 5 905 905 HOH HOH . G 5 HOH A 6 906 906 HOH HOH . G 5 HOH A 7 907 907 HOH HOH . G 5 HOH A 8 908 908 HOH HOH . G 5 HOH A 9 909 909 HOH HOH . G 5 HOH A 10 910 910 HOH HOH . G 5 HOH A 11 911 911 HOH HOH . G 5 HOH A 12 912 912 HOH HOH . G 5 HOH A 13 913 913 HOH HOH . G 5 HOH A 14 914 914 HOH HOH . G 5 HOH A 15 915 915 HOH HOH . G 5 HOH A 16 916 916 HOH HOH . G 5 HOH A 17 917 917 HOH HOH . G 5 HOH A 18 918 918 HOH HOH . G 5 HOH A 19 919 919 HOH HOH . G 5 HOH A 20 920 920 HOH HOH . G 5 HOH A 21 921 921 HOH HOH . G 5 HOH A 22 922 922 HOH HOH . G 5 HOH A 23 923 923 HOH HOH . G 5 HOH A 24 924 924 HOH HOH . G 5 HOH A 25 925 925 HOH HOH . G 5 HOH A 26 926 926 HOH HOH . G 5 HOH A 27 927 927 HOH HOH . G 5 HOH A 28 928 928 HOH HOH . G 5 HOH A 29 929 929 HOH HOH . G 5 HOH A 30 930 930 HOH HOH . G 5 HOH A 31 931 931 HOH HOH . G 5 HOH A 32 932 932 HOH HOH . G 5 HOH A 33 933 933 HOH HOH . G 5 HOH A 34 934 934 HOH HOH . G 5 HOH A 35 935 935 HOH HOH . G 5 HOH A 36 936 936 HOH HOH . G 5 HOH A 37 937 937 HOH HOH . G 5 HOH A 38 938 938 HOH HOH . G 5 HOH A 39 939 939 HOH HOH . G 5 HOH A 40 940 940 HOH HOH . G 5 HOH A 41 941 941 HOH HOH . G 5 HOH A 42 942 942 HOH HOH . G 5 HOH A 43 943 943 HOH HOH . G 5 HOH A 44 944 944 HOH HOH . G 5 HOH A 45 945 945 HOH HOH . G 5 HOH A 46 946 946 HOH HOH . G 5 HOH A 47 947 947 HOH HOH . G 5 HOH A 48 948 948 HOH HOH . G 5 HOH A 49 949 949 HOH HOH . G 5 HOH A 50 950 950 HOH HOH . G 5 HOH A 51 951 951 HOH HOH . G 5 HOH A 52 952 952 HOH HOH . G 5 HOH A 53 953 953 HOH HOH . G 5 HOH A 54 954 954 HOH HOH . G 5 HOH A 55 955 955 HOH HOH . G 5 HOH A 56 956 956 HOH HOH . G 5 HOH A 57 957 957 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . F 4 55.601 89.879 274.775 1 54.07 ? C1 PEG 505 A 1 HETATM 2 O O1 PEG . . . F 4 54.495 89.205 275.175 1 56.88 ? O1 PEG 505 A 1 HETATM 3 C C2 PEG . . . F 4 56.49 88.973 273.978 1 55.55 ? C2 PEG 505 A 1 HETATM 4 O O2 PEG . . . F 4 57.8 89.506 273.938 1 56.28 ? O2 PEG 505 A 1 HETATM 5 C C3 PEG . . . F 4 58.827 88.509 274.14 1 54.32 ? C3 PEG 505 A 1 HETATM 6 C C4 PEG . . . F 4 59.925 89.052 275.023 1 49.19 ? C4 PEG 505 A 1 HETATM 7 O O4 PEG . . . F 4 59.896 88.39 276.272 1 57.13 ? O4 PEG 505 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 7 #