data_3X3C
#
_model_server_result.job_id            1djnMykM8p6jI7PEL-ThsQ 
_model_server_result.datetime_utc      '2024-11-08 01:35:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3x3c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    3X3C 
#
_exptl.entry_id    3X3C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3X3C 
_cell.length_a            40.552 
_cell.length_b            83.492 
_cell.length_c            234.569 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3X3C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_335 -x-2,-y-2,z -1 0 0 0 -1 0 0 0 1 -81.104 -166.984 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 317 n n 
C1 C6 RET sing 318 n n 
C1 C16 RET sing 319 n n 
C1 C17 RET sing 320 n n 
C2 C3 RET sing 321 n n 
C2 H21 RET sing 322 n n 
C2 H22 RET sing 323 n n 
C3 C4 RET sing 324 n n 
C3 H31 RET sing 325 n n 
C3 H32 RET sing 326 n n 
C4 C5 RET sing 327 n n 
C4 H41 RET sing 328 n n 
C4 H42 RET sing 329 n n 
C5 C6 RET doub 330 n n 
C5 C18 RET sing 331 n n 
C6 C7 RET sing 332 n n 
C7 C8 RET doub 333 e n 
C7 H7 RET sing 334 n n 
C8 C9 RET sing 335 n n 
C8 H8 RET sing 336 n n 
C9 C10 RET doub 337 e n 
C9 C19 RET sing 338 n n 
C10 C11 RET sing 339 n n 
C10 H10 RET sing 340 n n 
C11 C12 RET doub 341 e n 
C11 H11 RET sing 342 n n 
C12 C13 RET sing 343 n n 
C12 H12 RET sing 344 n n 
C13 C14 RET doub 345 e n 
C13 C20 RET sing 346 n n 
C14 C15 RET sing 347 n n 
C14 H14 RET sing 348 n n 
C15 O1 RET doub 349 n n 
C15 H15 RET sing 350 n n 
C16 H161 RET sing 351 n n 
C16 H162 RET sing 352 n n 
C16 H163 RET sing 353 n n 
C17 H171 RET sing 354 n n 
C17 H172 RET sing 355 n n 
C17 H173 RET sing 356 n n 
C18 H181 RET sing 357 n n 
C18 H182 RET sing 358 n n 
C18 H183 RET sing 359 n n 
C19 H191 RET sing 360 n n 
C19 H192 RET sing 361 n n 
C19 H193 RET sing 362 n n 
C20 H201 RET sing 363 n n 
C20 H202 RET sing 364 n n 
C20 H203 RET sing 365 n n 
#
_atom_sites.entry_id                     3X3C 
_atom_sites.fract_transf_matrix[1][1]    0.02466 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011977 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004263 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 501 501 RET RET . 
C 3 OLA A 1 502 601 OLA OLA . 
D 3 OLA A 1 503 602 OLA OLA . 
E 3 OLA A 1 504 603 OLA OLA . 
F 4 HOH A 1 901 901 HOH HOH . 
F 4 HOH A 2 902 902 HOH HOH . 
F 4 HOH A 3 903 903 HOH HOH . 
F 4 HOH A 4 904 904 HOH HOH . 
F 4 HOH A 5 905 905 HOH HOH . 
F 4 HOH A 6 906 906 HOH HOH . 
F 4 HOH A 7 907 907 HOH HOH . 
F 4 HOH A 8 908 908 HOH HOH . 
F 4 HOH A 9 909 909 HOH HOH . 
F 4 HOH A 10 910 910 HOH HOH . 
F 4 HOH A 11 911 911 HOH HOH . 
F 4 HOH A 12 912 912 HOH HOH . 
F 4 HOH A 13 913 913 HOH HOH . 
F 4 HOH A 14 914 914 HOH HOH . 
F 4 HOH A 15 915 915 HOH HOH . 
F 4 HOH A 16 916 916 HOH HOH . 
F 4 HOH A 17 917 917 HOH HOH . 
F 4 HOH A 18 918 918 HOH HOH . 
F 4 HOH A 19 919 919 HOH HOH . 
F 4 HOH A 20 920 920 HOH HOH . 
F 4 HOH A 21 921 921 HOH HOH . 
F 4 HOH A 22 922 922 HOH HOH . 
F 4 HOH A 23 923 923 HOH HOH . 
F 4 HOH A 24 924 924 HOH HOH . 
F 4 HOH A 25 925 925 HOH HOH . 
F 4 HOH A 26 926 926 HOH HOH . 
F 4 HOH A 27 927 927 HOH HOH . 
F 4 HOH A 28 928 928 HOH HOH . 
F 4 HOH A 29 929 929 HOH HOH . 
F 4 HOH A 30 930 930 HOH HOH . 
F 4 HOH A 31 931 931 HOH HOH . 
F 4 HOH A 32 932 932 HOH HOH . 
F 4 HOH A 33 933 933 HOH HOH . 
F 4 HOH A 34 934 934 HOH HOH . 
F 4 HOH A 35 935 935 HOH HOH . 
F 4 HOH A 36 936 936 HOH HOH . 
F 4 HOH A 37 937 937 HOH HOH . 
F 4 HOH A 38 938 938 HOH HOH . 
F 4 HOH A 39 939 939 HOH HOH . 
F 4 HOH A 40 940 940 HOH HOH . 
F 4 HOH A 41 941 941 HOH HOH . 
F 4 HOH A 42 942 942 HOH HOH . 
F 4 HOH A 43 943 943 HOH HOH . 
F 4 HOH A 44 944 944 HOH HOH . 
F 4 HOH A 45 945 945 HOH HOH . 
F 4 HOH A 46 946 946 HOH HOH . 
F 4 HOH A 47 947 947 HOH HOH . 
F 4 HOH A 48 948 948 HOH HOH . 
F 4 HOH A 49 949 949 HOH HOH . 
F 4 HOH A 50 950 950 HOH HOH . 
F 4 HOH A 51 951 951 HOH HOH . 
F 4 HOH A 52 952 952 HOH HOH . 
F 4 HOH A 53 953 953 HOH HOH . 
F 4 HOH A 54 954 954 HOH HOH . 
F 4 HOH A 55 955 955 HOH HOH . 
F 4 HOH A 56 956 956 HOH HOH . 
F 4 HOH A 57 957 957 HOH HOH . 
F 4 HOH A 58 958 958 HOH HOH . 
F 4 HOH A 59 959 959 HOH HOH . 
F 4 HOH A 60 960 960 HOH HOH . 
F 4 HOH A 61 961 961 HOH HOH . 
F 4 HOH A 62 962 962 HOH HOH . 
F 4 HOH A 63 963 963 HOH HOH . 
F 4 HOH A 64 964 964 HOH HOH . 
F 4 HOH A 65 965 965 HOH HOH . 
F 4 HOH A 66 966 966 HOH HOH . 
F 4 HOH A 67 967 967 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . B 2 -42.362 -57.988 496.424 1 34.34 ? C1 RET 501 A 1 
HETATM 2 C C2 RET . . . B 2 -42.862 -56.896 495.464 1 32.97 ? C2 RET 501 A 1 
HETATM 3 C C3 RET . . . B 2 -42.048 -55.615 495.504 1 32.1 ? C3 RET 501 A 1 
HETATM 4 C C4 RET . . . B 2 -42.072 -55.037 496.907 1 33.2 ? C4 RET 501 A 1 
HETATM 5 C C5 RET . . . B 2 -41.808 -56.055 497.984 1 36.37 ? C5 RET 501 A 1 
HETATM 6 C C6 RET . . . B 2 -41.931 -57.378 497.77 1 32.65 ? C6 RET 501 A 1 
HETATM 7 C C7 RET . . . B 2 -41.537 -58.275 498.897 1 29.79 ? C7 RET 501 A 1 
HETATM 8 C C8 RET . . . B 2 -41.383 -59.602 498.923 1 26.24 ? C8 RET 501 A 1 
HETATM 9 C C9 RET . . . B 2 -40.938 -60.417 500.035 1 35.68 ? C9 RET 501 A 1 
HETATM 10 C C10 RET . . . B 2 -40.959 -61.763 499.899 1 31.64 ? C10 RET 501 A 1 
HETATM 11 C C11 RET . . . B 2 -40.519 -62.735 500.833 1 25.15 ? C11 RET 501 A 1 
HETATM 12 C C12 RET . . . B 2 -40.583 -64.033 500.556 1 31.18 ? C12 RET 501 A 1 
HETATM 13 C C13 RET . . . B 2 -39.957 -65.12 501.28 1 34.07 ? C13 RET 501 A 1 
HETATM 14 C C14 RET . . . B 2 -39.914 -66.338 500.69 1 31.01 ? C14 RET 501 A 1 
HETATM 15 C C15 RET . . . B 2 -39.157 -67.467 501.152 1 29.92 ? C15 RET 501 A 1 
HETATM 16 C C16 RET . . . B 2 -41.179 -58.68 495.737 1 30.57 ? C16 RET 501 A 1 
HETATM 17 C C17 RET . . . B 2 -43.492 -59.015 496.615 1 28.51 ? C17 RET 501 A 1 
HETATM 18 C C18 RET . . . B 2 -41.366 -55.445 499.283 1 30.85 ? C18 RET 501 A 1 
HETATM 19 C C19 RET . . . B 2 -40.419 -59.727 501.27 1 28.57 ? C19 RET 501 A 1 
HETATM 20 C C20 RET . . . B 2 -39.287 -64.809 502.594 1 28.13 ? C20 RET 501 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#