data_3X3G # _model_server_result.job_id Imqzegz9lxGL1cQKpgjAkA _model_server_result.datetime_utc '2024-11-24 19:42:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3x3g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 3X3G # _exptl.entry_id 3X3G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3X3G _cell.length_a 153.001 _cell.length_b 165.383 _cell.length_c 65.297 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3X3G _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf2 A SG CYS 140 H CYS 140 1_555 B SG CYS 214 L CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 153 H CYS 153 1_555 A SG CYS 209 H CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? disulf ? disulf5 B SG CYS 134 L CYS 134 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3X3G _atom_sites.fract_transf_matrix[1][1] 0.006536 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG H 1 301 301 NAG NAG . D 4 CL H 1 302 302 CL CL . E 5 SO4 H 1 303 303 SO4 SO4 . F 5 SO4 H 1 304 304 SO4 SO4 . G 4 CL L 1 301 301 CL CL . H 4 CL L 1 302 302 CL CL . I 6 HOH H 1 401 1 HOH HOH . I 6 HOH H 2 402 2 HOH HOH . I 6 HOH H 3 403 6 HOH HOH . I 6 HOH H 4 404 8 HOH HOH . I 6 HOH H 5 405 11 HOH HOH . I 6 HOH H 6 406 13 HOH HOH . I 6 HOH H 7 407 23 HOH HOH . I 6 HOH H 8 408 26 HOH HOH . I 6 HOH H 9 409 40 HOH HOH . I 6 HOH H 10 410 42 HOH HOH . I 6 HOH H 11 411 51 HOH HOH . I 6 HOH H 12 412 61 HOH HOH . I 6 HOH H 13 413 63 HOH HOH . I 6 HOH H 14 414 71 HOH HOH . I 6 HOH H 15 415 82 HOH HOH . I 6 HOH H 16 416 85 HOH HOH . I 6 HOH H 17 417 86 HOH HOH . I 6 HOH H 18 418 88 HOH HOH . I 6 HOH H 19 419 99 HOH HOH . I 6 HOH H 20 420 101 HOH HOH . I 6 HOH H 21 421 102 HOH HOH . I 6 HOH H 22 422 107 HOH HOH . I 6 HOH H 23 423 110 HOH HOH . I 6 HOH H 24 424 116 HOH HOH . I 6 HOH H 25 425 129 HOH HOH . I 6 HOH H 26 426 132 HOH HOH . I 6 HOH H 27 427 143 HOH HOH . I 6 HOH H 28 428 144 HOH HOH . I 6 HOH H 29 429 145 HOH HOH . J 6 HOH L 1 401 21 HOH HOH . J 6 HOH L 2 402 35 HOH HOH . J 6 HOH L 3 403 36 HOH HOH . J 6 HOH L 4 404 37 HOH HOH . J 6 HOH L 5 405 39 HOH HOH . J 6 HOH L 6 406 47 HOH HOH . J 6 HOH L 7 407 49 HOH HOH . J 6 HOH L 8 408 56 HOH HOH . J 6 HOH L 9 409 58 HOH HOH . J 6 HOH L 10 410 72 HOH HOH . J 6 HOH L 11 411 83 HOH HOH . J 6 HOH L 12 412 103 HOH HOH . J 6 HOH L 13 413 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 81.969 18.563 6.473 1 93.67 ? C1 NAG 301 H 1 HETATM 2 C C2 NAG . . . C 3 83.069 19.552 6.099 1 100.81 ? C2 NAG 301 H 1 HETATM 3 C C3 NAG . . . C 3 84.188 19.382 7.113 1 104.41 ? C3 NAG 301 H 1 HETATM 4 C C4 NAG . . . C 3 83.668 19.682 8.537 1 114.42 ? C4 NAG 301 H 1 HETATM 5 C C5 NAG . . . C 3 82.344 18.885 8.834 1 112.65 ? C5 NAG 301 H 1 HETATM 6 C C6 NAG . . . C 3 81.631 19.185 10.197 1 111.8 ? C6 NAG 301 H 1 HETATM 7 C C7 NAG . . . C 3 83.441 20.315 3.721 1 98.8 ? C7 NAG 301 H 1 HETATM 8 C C8 NAG . . . C 3 82.609 21.574 3.876 1 95.46 ? C8 NAG 301 H 1 HETATM 9 N N2 NAG . . . C 3 83.606 19.436 4.741 1 95.49 ? N2 NAG 301 H 1 HETATM 10 O O3 NAG . . . C 3 85.215 20.256 6.7 1 100.41 ? O3 NAG 301 H 1 HETATM 11 O O4 NAG . . . C 3 84.732 19.552 9.498 1 93.94 ? O4 NAG 301 H 1 HETATM 12 O O5 NAG . . . C 3 81.435 18.971 7.726 1 109.62 ? O5 NAG 301 H 1 HETATM 13 O O6 NAG . . . C 3 80.348 19.829 10.194 1 87.54 ? O6 NAG 301 H 1 HETATM 14 O O7 NAG . . . C 3 83.952 20.124 2.621 1 75.31 ? O7 NAG 301 H 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #