data_3YPI # _model_server_result.job_id 9IMkQVuqV39Dypgj7I0QOQ _model_server_result.datetime_utc '2024-11-04 23:04:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ypi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":249}' # _entry.id 3YPI # _exptl.entry_id 3YPI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 171.046 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOGLYCOLOHYDROXAMIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.7 _cell.angle_gamma 90 _cell.entry_id 3YPI _cell.length_a 74.35 _cell.length_b 83.97 _cell.length_c 38.67 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3YPI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C2 H6 N O6 P' _chem_comp.formula_weight 171.046 _chem_comp.id PGH _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOGLYCOLOHYDROXAMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PGH sing 216 n n C1 N2 PGH sing 217 n n C1 O1 PGH doub 218 n n C2 O1P PGH sing 219 n n C2 H21 PGH sing 220 n n C2 H22 PGH sing 221 n n N2 O2 PGH sing 222 n n N2 HN PGH sing 223 n n O2 HO2 PGH sing 224 n n O1P P PGH sing 225 n n O2P P PGH doub 226 n n O3P P PGH sing 227 n n O3P HOP3 PGH sing 228 n n O4P P PGH sing 229 n n O4P HOP4 PGH sing 230 n n # _atom_sites.entry_id 3YPI _atom_sites.fract_transf_matrix[1][1] 0.01345 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002299 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011909 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PGH A 1 249 249 PGH PGH . D 2 PGH B 1 249 249 PGH PGH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGH . . . D 2 55.084 42.843 53.236 1 12 ? C1 PGH 249 B 1 HETATM 2 C C2 PGH . . . D 2 54.414 42.074 54.345 1 12 ? C2 PGH 249 B 1 HETATM 3 N N2 PGH . . . D 2 56.193 42.142 52.95 1 12 ? N2 PGH 249 B 1 HETATM 4 O O2 PGH . . . D 2 57.495 42.635 52.64 1 12 ? O2 PGH 249 B 1 HETATM 5 O O1 PGH . . . D 2 55.046 44.094 53.256 1 12 ? O1 PGH 249 B 1 HETATM 6 O O1P PGH . . . D 2 55.154 42.482 55.52 1 12 ? O1P PGH 249 B 1 HETATM 7 O O2P PGH . . . D 2 54.285 40.574 57.015 1 12 ? O2P PGH 249 B 1 HETATM 8 O O3P PGH . . . D 2 53.299 42.963 57.205 1 12 ? O3P PGH 249 B 1 HETATM 9 O O4P PGH . . . D 2 55.841 42.521 57.76 1 12 ? O4P PGH 249 B 1 HETATM 10 P P PGH . . . D 2 54.55 42.093 57.022 1 12 ? P PGH 249 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #