data_3ZBF # _model_server_result.job_id KakDy-wMiT5hiHCp3kjWfA _model_server_result.datetime_utc '2024-11-28 06:09:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zbf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":3000}' # _entry.id 3ZBF # _exptl.entry_id 3ZBF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 450.337 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[(1R)-1-(2,6-dichloro-3-fluorophenyl)ethoxy]-5-(1-piperidin-4-yl-1H-pyrazol-4-yl)pyridin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ZBF _cell.length_a 106.854 _cell.length_b 106.854 _cell.length_c 50.357 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZBF _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H22 Cl2 F N5 O' _chem_comp.formula_weight 450.337 _chem_comp.id VGH _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(1R)-1-(2,6-dichloro-3-fluorophenyl)ethoxy]-5-(1-piperidin-4-yl-1H-pyrazol-4-yl)pyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CRIZOTINIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C13 VGH sing 376 n n C13 C3 VGH sing 377 n y C13 C17 VGH doub 378 n y C3 C2 VGH doub 379 n y C2 C12 VGH sing 380 n y C12 F VGH sing 381 n n C12 C18 VGH doub 382 n y C17 C18 VGH sing 383 n y C17 C21 VGH sing 384 n n C18 CL2 VGH sing 385 n n C21 C1 VGH sing 386 n n C21 O27 VGH sing 387 n n O27 C15 VGH sing 388 n n C15 C4 VGH doub 389 n y C15 C19 VGH sing 390 n y C4 C14 VGH sing 391 n y C19 N22 VGH sing 392 n n C19 N23 VGH doub 393 n y N23 C5 VGH sing 394 n y C5 C14 VGH doub 395 n y C14 C16 VGH sing 396 n y C16 C6 VGH sing 397 n y C16 C7 VGH doub 398 n y C6 N24 VGH doub 399 n y C7 N26 VGH sing 400 n y N26 N24 VGH sing 401 n y N26 C20 VGH sing 402 n n C20 C8 VGH sing 403 n n C20 C9 VGH sing 404 n n C8 C10 VGH sing 405 n n C10 N25 VGH sing 406 n n N25 C11 VGH sing 407 n n C11 C9 VGH sing 408 n n C3 H3 VGH sing 409 n n C2 H2 VGH sing 410 n n C21 H21 VGH sing 411 n n C1 H11C VGH sing 412 n n C1 H12C VGH sing 413 n n C1 H13C VGH sing 414 n n C4 H4 VGH sing 415 n n N22 H221 VGH sing 416 n n N22 H222 VGH sing 417 n n C5 H5 VGH sing 418 n n C6 H6 VGH sing 419 n n C7 H7 VGH sing 420 n n C20 H20 VGH sing 421 n n C8 H81C VGH sing 422 n n C8 H82C VGH sing 423 n n C9 H91C VGH sing 424 n n C9 H92C VGH sing 425 n n C10 H101 VGH sing 426 n n C10 H102 VGH sing 427 n n N25 H25 VGH sing 428 n n C11 H111 VGH sing 429 n n C11 H112 VGH sing 430 n n # _atom_sites.entry_id 3ZBF _atom_sites.fract_transf_matrix[1][1] 0.009359 _atom_sites.fract_transf_matrix[1][2] 0.005403 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010806 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019858 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VGH A 1 3000 3000 VGH VGH . C 3 HOH A 1 3001 3001 HOH HOH . C 3 HOH A 2 3002 3002 HOH HOH . C 3 HOH A 3 3003 3003 HOH HOH . C 3 HOH A 4 3004 3004 HOH HOH . C 3 HOH A 5 3005 3005 HOH HOH . C 3 HOH A 6 3006 3006 HOH HOH . C 3 HOH A 7 3007 3007 HOH HOH . C 3 HOH A 8 3008 3008 HOH HOH . C 3 HOH A 9 3009 3009 HOH HOH . C 3 HOH A 10 3010 3010 HOH HOH . C 3 HOH A 11 3011 3011 HOH HOH . C 3 HOH A 12 3012 3012 HOH HOH . C 3 HOH A 13 3013 3013 HOH HOH . C 3 HOH A 14 3014 3014 HOH HOH . C 3 HOH A 15 3015 3015 HOH HOH . C 3 HOH A 16 3016 3016 HOH HOH . C 3 HOH A 17 3017 3017 HOH HOH . C 3 HOH A 18 3018 3018 HOH HOH . C 3 HOH A 19 3019 3019 HOH HOH . C 3 HOH A 20 3020 3020 HOH HOH . C 3 HOH A 21 3021 3021 HOH HOH . C 3 HOH A 22 3022 3022 HOH HOH . C 3 HOH A 23 3023 3023 HOH HOH . C 3 HOH A 24 3024 3024 HOH HOH . C 3 HOH A 25 3025 3025 HOH HOH . C 3 HOH A 26 3026 3026 HOH HOH . C 3 HOH A 27 3027 3027 HOH HOH . C 3 HOH A 28 3028 3028 HOH HOH . C 3 HOH A 29 3029 3029 HOH HOH . C 3 HOH A 30 3030 3030 HOH HOH . C 3 HOH A 31 3031 3031 HOH HOH . C 3 HOH A 32 3032 3032 HOH HOH . C 3 HOH A 33 3033 3033 HOH HOH . C 3 HOH A 34 3034 3034 HOH HOH . C 3 HOH A 35 3035 3035 HOH HOH . C 3 HOH A 36 3036 3036 HOH HOH . C 3 HOH A 37 3037 3037 HOH HOH . C 3 HOH A 38 3038 3038 HOH HOH . C 3 HOH A 39 3039 3039 HOH HOH . C 3 HOH A 40 3040 3040 HOH HOH . C 3 HOH A 41 3041 3041 HOH HOH . C 3 HOH A 42 3042 3042 HOH HOH . C 3 HOH A 43 3043 3043 HOH HOH . C 3 HOH A 44 3044 3044 HOH HOH . C 3 HOH A 45 3045 3045 HOH HOH . C 3 HOH A 46 3046 3046 HOH HOH . C 3 HOH A 47 3047 3047 HOH HOH . C 3 HOH A 48 3048 3048 HOH HOH . C 3 HOH A 49 3049 3049 HOH HOH . C 3 HOH A 50 3050 3050 HOH HOH . C 3 HOH A 51 3051 3051 HOH HOH . C 3 HOH A 52 3052 3052 HOH HOH . C 3 HOH A 53 3053 3053 HOH HOH . C 3 HOH A 54 3054 3054 HOH HOH . C 3 HOH A 55 3055 3055 HOH HOH . C 3 HOH A 56 3056 3056 HOH HOH . C 3 HOH A 57 3057 3057 HOH HOH . C 3 HOH A 58 3058 3058 HOH HOH . C 3 HOH A 59 3059 3059 HOH HOH . C 3 HOH A 60 3060 3060 HOH HOH . C 3 HOH A 61 3061 3061 HOH HOH . C 3 HOH A 62 3062 3062 HOH HOH . C 3 HOH A 63 3063 3063 HOH HOH . C 3 HOH A 64 3064 3064 HOH HOH . C 3 HOH A 65 3065 3065 HOH HOH . C 3 HOH A 66 3066 3066 HOH HOH . C 3 HOH A 67 3067 3067 HOH HOH . C 3 HOH A 68 3068 3068 HOH HOH . C 3 HOH A 69 3069 3069 HOH HOH . C 3 HOH A 70 3070 3070 HOH HOH . C 3 HOH A 71 3071 3071 HOH HOH . C 3 HOH A 72 3072 3072 HOH HOH . C 3 HOH A 73 3073 3073 HOH HOH . C 3 HOH A 74 3074 3074 HOH HOH . C 3 HOH A 75 3075 3075 HOH HOH . C 3 HOH A 76 3076 3076 HOH HOH . C 3 HOH A 77 3077 3077 HOH HOH . C 3 HOH A 78 3078 3078 HOH HOH . C 3 HOH A 79 3079 3079 HOH HOH . C 3 HOH A 80 3080 3080 HOH HOH . C 3 HOH A 81 3081 3081 HOH HOH . C 3 HOH A 82 3082 3082 HOH HOH . C 3 HOH A 83 3083 3083 HOH HOH . C 3 HOH A 84 3084 3084 HOH HOH . C 3 HOH A 85 3085 3085 HOH HOH . C 3 HOH A 86 3086 3086 HOH HOH . C 3 HOH A 87 3087 3087 HOH HOH . C 3 HOH A 88 3088 3088 HOH HOH . C 3 HOH A 89 3089 3089 HOH HOH . C 3 HOH A 90 3090 3090 HOH HOH . C 3 HOH A 91 3091 3091 HOH HOH . C 3 HOH A 92 3092 3092 HOH HOH . C 3 HOH A 93 3093 3093 HOH HOH . C 3 HOH A 94 3094 3094 HOH HOH . C 3 HOH A 95 3095 3095 HOH HOH . C 3 HOH A 96 3096 3096 HOH HOH . C 3 HOH A 97 3097 3097 HOH HOH . C 3 HOH A 98 3098 3098 HOH HOH . C 3 HOH A 99 3099 3099 HOH HOH . C 3 HOH A 100 3100 3100 HOH HOH . C 3 HOH A 101 3101 3101 HOH HOH . C 3 HOH A 102 3102 3102 HOH HOH . C 3 HOH A 103 3103 3103 HOH HOH . C 3 HOH A 104 3104 3104 HOH HOH . C 3 HOH A 105 3105 3105 HOH HOH . C 3 HOH A 106 3106 3106 HOH HOH . C 3 HOH A 107 3107 3107 HOH HOH . C 3 HOH A 108 3108 3108 HOH HOH . C 3 HOH A 109 3109 3109 HOH HOH . C 3 HOH A 110 3110 3110 HOH HOH . C 3 HOH A 111 3111 3111 HOH HOH . C 3 HOH A 112 3112 3112 HOH HOH . C 3 HOH A 113 3113 3113 HOH HOH . C 3 HOH A 114 3114 3114 HOH HOH . C 3 HOH A 115 3115 3115 HOH HOH . C 3 HOH A 116 3116 3116 HOH HOH . C 3 HOH A 117 3117 3117 HOH HOH . C 3 HOH A 118 3118 3118 HOH HOH . C 3 HOH A 119 3119 3119 HOH HOH . C 3 HOH A 120 3120 3120 HOH HOH . C 3 HOH A 121 3121 3121 HOH HOH . C 3 HOH A 122 3122 3122 HOH HOH . C 3 HOH A 123 3123 3123 HOH HOH . C 3 HOH A 124 3124 3124 HOH HOH . C 3 HOH A 125 3125 3125 HOH HOH . C 3 HOH A 126 3126 3126 HOH HOH . C 3 HOH A 127 3127 3127 HOH HOH . C 3 HOH A 128 3128 3128 HOH HOH . C 3 HOH A 129 3129 3129 HOH HOH . C 3 HOH A 130 3130 3130 HOH HOH . C 3 HOH A 131 3131 3131 HOH HOH . C 3 HOH A 132 3132 3132 HOH HOH . C 3 HOH A 133 3133 3133 HOH HOH . C 3 HOH A 134 3134 3134 HOH HOH . C 3 HOH A 135 3135 3135 HOH HOH . C 3 HOH A 136 3136 3136 HOH HOH . C 3 HOH A 137 3137 3137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL VGH . . . B 2 41.46 21.445 3.206 1 53.92 ? CL VGH 3000 A 1 HETATM 2 C C13 VGH . . . B 2 40.342 20.151 3.469 1 51.61 ? C13 VGH 3000 A 1 HETATM 3 C C3 VGH . . . B 2 40.039 19.339 2.333 1 51.64 ? C3 VGH 3000 A 1 HETATM 4 C C2 VGH . . . B 2 39.135 18.258 2.432 1 51.88 ? C2 VGH 3000 A 1 HETATM 5 C C12 VGH . . . B 2 38.508 17.957 3.669 1 53.21 ? C12 VGH 3000 A 1 HETATM 6 F F VGH . . . B 2 37.651 16.922 3.727 1 51.93 ? F VGH 3000 A 1 HETATM 7 C C17 VGH . . . B 2 39.723 19.875 4.759 1 51.22 ? C17 VGH 3000 A 1 HETATM 8 C C18 VGH . . . B 2 38.788 18.748 4.836 1 53.17 ? C18 VGH 3000 A 1 HETATM 9 CL CL2 VGH . . . B 2 37.96 18.286 6.305 1 65.44 ? CL2 VGH 3000 A 1 HETATM 10 C C21 VGH . . . B 2 40.062 20.783 6.011 1 47.98 ? C21 VGH 3000 A 1 HETATM 11 C C1 VGH . . . B 2 38.771 21.384 6.608 1 44.93 ? C1 VGH 3000 A 1 HETATM 12 O O27 VGH . . . B 2 40.753 20.075 7.125 1 42.27 ? O27 VGH 3000 A 1 HETATM 13 C C15 VGH . . . B 2 42.016 19.472 7.031 1 38.99 ? C15 VGH 3000 A 1 HETATM 14 C C4 VGH . . . B 2 42.967 19.776 6.004 1 40.94 ? C4 VGH 3000 A 1 HETATM 15 C C19 VGH . . . B 2 42.443 18.505 8.006 1 37.27 ? C19 VGH 3000 A 1 HETATM 16 N N22 VGH . . . B 2 41.578 18.149 9.061 1 36.61 ? N22 VGH 3000 A 1 HETATM 17 N N23 VGH . . . B 2 43.668 17.894 7.986 1 37.98 ? N23 VGH 3000 A 1 HETATM 18 C C5 VGH . . . B 2 44.548 18.214 6.979 1 40.12 ? C5 VGH 3000 A 1 HETATM 19 C C14 VGH . . . B 2 44.246 19.158 5.951 1 40.87 ? C14 VGH 3000 A 1 HETATM 20 C C16 VGH . . . B 2 45.193 19.529 4.829 1 44.81 ? C16 VGH 3000 A 1 HETATM 21 C C6 VGH . . . B 2 46.631 19.294 4.693 1 45.2 ? C6 VGH 3000 A 1 HETATM 22 C C7 VGH . . . B 2 44.837 20.196 3.675 1 48.89 ? C7 VGH 3000 A 1 HETATM 23 N N26 VGH . . . B 2 46.003 20.318 2.954 1 52.17 ? N26 VGH 3000 A 1 HETATM 24 N N24 VGH . . . B 2 47.019 19.79 3.561 1 48.48 ? N24 VGH 3000 A 1 HETATM 25 C C20 VGH . . . B 2 46.042 20.983 1.634 1 57.73 ? C20 VGH 3000 A 1 HETATM 26 C C8 VGH . . . B 2 45.77 19.938 0.518 1 60.56 ? C8 VGH 3000 A 1 HETATM 27 C C10 VGH . . . B 2 45.805 20.633 -0.863 1 62.17 ? C10 VGH 3000 A 1 HETATM 28 N N25 VGH . . . B 2 47.063 21.404 -1.088 1 62.01 ? N25 VGH 3000 A 1 HETATM 29 C C11 VGH . . . B 2 47.361 22.376 0.008 1 60.06 ? C11 VGH 3000 A 1 HETATM 30 C C9 VGH . . . B 2 47.391 21.699 1.399 1 59.17 ? C9 VGH 3000 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #