data_3ZBR # _model_server_result.job_id fyWAkDVK3EAXACJHwuf3Lg _model_server_result.datetime_utc '2024-11-25 05:20:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zbr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1379}' # _entry.id 3ZBR # _exptl.entry_id 3ZBR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.26 _cell.angle_gamma 90 _cell.entry_id 3ZBR _cell.length_a 42.1 _cell.length_b 47.1 _cell.length_c 111.17 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZBR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 3ZBR _atom_sites.fract_transf_matrix[1][1] 0.023753 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000108 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008995 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 1379 1379 NAP NAP . D 2 NAP B 1 1379 1379 NAP NAP . E 3 HOH A 1 2001 2001 HOH HOH . E 3 HOH A 2 2002 2002 HOH HOH . E 3 HOH A 3 2003 2003 HOH HOH . E 3 HOH A 4 2004 2004 HOH HOH . E 3 HOH A 5 2005 2005 HOH HOH . E 3 HOH A 6 2006 2006 HOH HOH . E 3 HOH A 7 2007 2007 HOH HOH . E 3 HOH A 8 2008 2008 HOH HOH . E 3 HOH A 9 2009 2009 HOH HOH . E 3 HOH A 10 2010 2010 HOH HOH . E 3 HOH A 11 2011 2011 HOH HOH . E 3 HOH A 12 2012 2012 HOH HOH . E 3 HOH A 13 2013 2013 HOH HOH . E 3 HOH A 14 2014 2014 HOH HOH . E 3 HOH A 15 2015 2015 HOH HOH . E 3 HOH A 16 2016 2016 HOH HOH . E 3 HOH A 17 2017 2017 HOH HOH . E 3 HOH A 18 2018 2018 HOH HOH . E 3 HOH A 19 2019 2019 HOH HOH . E 3 HOH A 20 2020 2020 HOH HOH . E 3 HOH A 21 2021 2021 HOH HOH . E 3 HOH A 22 2022 2022 HOH HOH . E 3 HOH A 23 2023 2023 HOH HOH . E 3 HOH A 24 2024 2024 HOH HOH . E 3 HOH A 25 2025 2025 HOH HOH . E 3 HOH A 26 2026 2026 HOH HOH . E 3 HOH A 27 2027 2027 HOH HOH . E 3 HOH A 28 2028 2028 HOH HOH . E 3 HOH A 29 2029 2029 HOH HOH . E 3 HOH A 30 2030 2030 HOH HOH . E 3 HOH A 31 2031 2031 HOH HOH . E 3 HOH A 32 2032 2032 HOH HOH . E 3 HOH A 33 2033 2033 HOH HOH . E 3 HOH A 34 2034 2034 HOH HOH . E 3 HOH A 35 2035 2035 HOH HOH . E 3 HOH A 36 2036 2036 HOH HOH . E 3 HOH A 37 2037 2037 HOH HOH . E 3 HOH A 38 2038 2038 HOH HOH . E 3 HOH A 39 2039 2039 HOH HOH . E 3 HOH A 40 2040 2040 HOH HOH . E 3 HOH A 41 2041 2041 HOH HOH . E 3 HOH A 42 2042 2042 HOH HOH . E 3 HOH A 43 2043 2043 HOH HOH . E 3 HOH A 44 2044 2044 HOH HOH . E 3 HOH A 45 2045 2045 HOH HOH . E 3 HOH A 46 2046 2046 HOH HOH . E 3 HOH A 47 2047 2047 HOH HOH . E 3 HOH A 48 2048 2048 HOH HOH . E 3 HOH A 49 2049 2049 HOH HOH . E 3 HOH A 50 2050 2050 HOH HOH . E 3 HOH A 51 2051 2051 HOH HOH . F 3 HOH B 1 2001 2001 HOH HOH . F 3 HOH B 2 2002 2002 HOH HOH . F 3 HOH B 3 2003 2003 HOH HOH . F 3 HOH B 4 2004 2004 HOH HOH . F 3 HOH B 5 2005 2005 HOH HOH . F 3 HOH B 6 2006 2006 HOH HOH . F 3 HOH B 7 2007 2007 HOH HOH . F 3 HOH B 8 2008 2008 HOH HOH . F 3 HOH B 9 2009 2009 HOH HOH . F 3 HOH B 10 2010 2010 HOH HOH . F 3 HOH B 11 2011 2011 HOH HOH . F 3 HOH B 12 2012 2012 HOH HOH . F 3 HOH B 13 2013 2013 HOH HOH . F 3 HOH B 14 2014 2014 HOH HOH . F 3 HOH B 15 2015 2015 HOH HOH . F 3 HOH B 16 2016 2016 HOH HOH . F 3 HOH B 17 2017 2017 HOH HOH . F 3 HOH B 18 2018 2018 HOH HOH . F 3 HOH B 19 2019 2019 HOH HOH . F 3 HOH B 20 2020 2020 HOH HOH . F 3 HOH B 21 2021 2021 HOH HOH . F 3 HOH B 22 2022 2022 HOH HOH . F 3 HOH B 23 2023 2023 HOH HOH . F 3 HOH B 24 2024 2024 HOH HOH . F 3 HOH B 25 2025 2025 HOH HOH . F 3 HOH B 26 2026 2026 HOH HOH . F 3 HOH B 27 2027 2027 HOH HOH . F 3 HOH B 28 2028 2028 HOH HOH . F 3 HOH B 29 2029 2029 HOH HOH . F 3 HOH B 30 2030 2030 HOH HOH . F 3 HOH B 31 2031 2031 HOH HOH . F 3 HOH B 32 2032 2032 HOH HOH . F 3 HOH B 33 2033 2033 HOH HOH . F 3 HOH B 34 2034 2034 HOH HOH . F 3 HOH B 35 2035 2035 HOH HOH . F 3 HOH B 36 2036 2036 HOH HOH . F 3 HOH B 37 2037 2037 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 2 55.413 -5.504 57.27 1 40.06 ? PA NAP 1379 A 1 HETATM 2 O O1A NAP . . . C 2 55.522 -5.947 58.707 1 38.68 ? O1A NAP 1379 A 1 HETATM 3 O O2A NAP . . . C 2 54.489 -4.365 56.911 1 47.8 ? O2A NAP 1379 A 1 HETATM 4 O O5B NAP . . . C 2 55.092 -6.749 56.305 1 29.65 ? O5B NAP 1379 A 1 HETATM 5 C C5B NAP . . . C 2 56.009 -7.84 56.235 1 32.7 ? C5B NAP 1379 A 1 HETATM 6 C C4B NAP . . . C 2 56.072 -8.343 54.803 1 33.33 ? C4B NAP 1379 A 1 HETATM 7 O O4B NAP . . . C 2 54.758 -8.27 54.255 1 38.06 ? O4B NAP 1379 A 1 HETATM 8 C C3B NAP . . . C 2 56.966 -7.496 53.913 1 38.13 ? C3B NAP 1379 A 1 HETATM 9 O O3B NAP . . . C 2 58.261 -8.088 53.762 1 44.65 ? O3B NAP 1379 A 1 HETATM 10 C C2B NAP . . . C 2 56.222 -7.43 52.598 1 39.86 ? C2B NAP 1379 A 1 HETATM 11 O O2B NAP . . . C 2 56.631 -8.494 51.743 1 41.31 ? O2B NAP 1379 A 1 HETATM 12 C C1B NAP . . . C 2 54.768 -7.661 52.964 1 40.67 ? C1B NAP 1379 A 1 HETATM 13 N N9A NAP . . . C 2 53.971 -6.412 53.061 1 45 ? N9A NAP 1379 A 1 HETATM 14 C C8A NAP . . . C 2 54.22 -5.366 53.874 1 43.01 ? C8A NAP 1379 A 1 HETATM 15 N N7A NAP . . . C 2 53.279 -4.398 53.715 1 43.56 ? N7A NAP 1379 A 1 HETATM 16 C C5A NAP . . . C 2 52.403 -4.826 52.788 1 48.21 ? C5A NAP 1379 A 1 HETATM 17 C C6A NAP . . . C 2 51.172 -4.303 52.144 1 49.59 ? C6A NAP 1379 A 1 HETATM 18 N N6A NAP . . . C 2 50.665 -3.087 52.466 1 40.4 ? N6A NAP 1379 A 1 HETATM 19 N N1A NAP . . . C 2 50.569 -5.086 51.22 1 57.19 ? N1A NAP 1379 A 1 HETATM 20 C C2A NAP . . . C 2 51.045 -6.298 50.877 1 60.22 ? C2A NAP 1379 A 1 HETATM 21 N N3A NAP . . . C 2 52.155 -6.826 51.424 1 59.55 ? N3A NAP 1379 A 1 HETATM 22 C C4A NAP . . . C 2 52.865 -6.155 52.362 1 52.54 ? C4A NAP 1379 A 1 HETATM 23 O O3 NAP . . . C 2 56.882 -5.179 56.715 1 23.55 ? O3 NAP 1379 A 1 HETATM 24 P PN NAP . . . C 2 58.139 -5.244 57.706 1 40.02 ? PN NAP 1379 A 1 HETATM 25 O O1N NAP . . . C 2 57.934 -4.228 58.803 1 49.11 ? O1N NAP 1379 A 1 HETATM 26 O O2N NAP . . . C 2 59.39 -5.223 56.866 1 34.62 ? O2N NAP 1379 A 1 HETATM 27 O O5D NAP . . . C 2 57.993 -6.724 58.321 1 69.04 ? O5D NAP 1379 A 1 HETATM 28 C C5D NAP . . . C 2 58.81 -7.118 59.416 1 69.89 ? C5D NAP 1379 A 1 HETATM 29 C C4D NAP . . . C 2 60.11 -7.681 58.857 1 71.7 ? C4D NAP 1379 A 1 HETATM 30 O O4D NAP . . . C 2 61.126 -7.699 59.859 1 73.95 ? O4D NAP 1379 A 1 HETATM 31 C C3D NAP . . . C 2 59.972 -9.106 58.341 1 69.96 ? C3D NAP 1379 A 1 HETATM 32 O O3D NAP . . . C 2 59.809 -9.122 56.917 1 65.56 ? O3D NAP 1379 A 1 HETATM 33 C C2D NAP . . . C 2 61.252 -9.803 58.772 1 73.54 ? C2D NAP 1379 A 1 HETATM 34 O O2D NAP . . . C 2 62.014 -10.236 57.64 1 74.34 ? O2D NAP 1379 A 1 HETATM 35 C C1D NAP . . . C 2 62.026 -8.774 59.589 1 76.88 ? C1D NAP 1379 A 1 HETATM 36 N N1N NAP . . . C 2 62.547 -9.352 60.834 1 82.47 ? N1N NAP 1379 A 1 HETATM 37 C C2N NAP . . . C 2 62.081 -8.938 62.024 1 79.87 ? C2N NAP 1379 A 1 HETATM 38 C C3N NAP . . . C 2 62.573 -9.482 63.208 1 75.24 ? C3N NAP 1379 A 1 HETATM 39 C C7N NAP . . . C 2 62.043 -9.012 64.535 1 59.74 ? C7N NAP 1379 A 1 HETATM 40 O O7N NAP . . . C 2 61.493 -7.925 64.605 1 52.67 ? O7N NAP 1379 A 1 HETATM 41 N N7N NAP . . . C 2 62.185 -9.787 65.611 1 53.63 ? N7N NAP 1379 A 1 HETATM 42 C C4N NAP . . . C 2 63.552 -10.465 63.148 1 83.53 ? C4N NAP 1379 A 1 HETATM 43 C C5N NAP . . . C 2 64.016 -10.874 61.906 1 87.92 ? C5N NAP 1379 A 1 HETATM 44 C C6N NAP . . . C 2 63.491 -10.3 60.756 1 87.31 ? C6N NAP 1379 A 1 HETATM 45 P P2B NAP . . . C 2 57.159 -8.258 50.242 1 62.2 ? P2B NAP 1379 A 1 HETATM 46 O O1X NAP . . . C 2 57.968 -6.987 50.328 1 66.88 ? O1X NAP 1379 A 1 HETATM 47 O O2X NAP . . . C 2 57.954 -9.504 49.928 1 59.28 ? O2X NAP 1379 A 1 HETATM 48 O O3X NAP . . . C 2 55.888 -8.12 49.434 1 59.39 ? O3X NAP 1379 A 1 HETATM 49 H H51A NAP . . . C 2 55.681 -8.644 56.897 1 39.24 ? H51A NAP 1379 A 1 HETATM 50 H H52A NAP . . . C 2 57 -7.513 56.557 1 39.24 ? H52A NAP 1379 A 1 HETATM 51 H H4B NAP . . . C 2 56.432 -9.382 54.798 1 39.99 ? H4B NAP 1379 A 1 HETATM 52 H H3B NAP . . . C 2 57.049 -6.485 54.336 1 45.76 ? H3B NAP 1379 A 1 HETATM 53 H HO3A NAP . . . C 2 58.706 -8.113 54.62 1 53.58 ? HO3A NAP 1379 A 1 HETATM 54 H H2B NAP . . . C 2 56.352 -6.446 52.124 1 47.83 ? H2B NAP 1379 A 1 HETATM 55 H H1B NAP . . . C 2 54.317 -8.339 52.225 1 48.8 ? H1B NAP 1379 A 1 HETATM 56 H H8A NAP . . . C 2 55.058 -5.303 54.558 1 51.61 ? H8A NAP 1379 A 1 HETATM 57 H H61A NAP . . . C 2 49.826 -2.753 52.012 1 48.48 ? H61A NAP 1379 A 1 HETATM 58 H H62A NAP . . . C 2 51.127 -2.513 53.157 1 48.48 ? H62A NAP 1379 A 1 HETATM 59 H H2A NAP . . . C 2 50.512 -6.872 50.13 1 72.26 ? H2A NAP 1379 A 1 HETATM 60 H H51N NAP . . . C 2 59.019 -6.258 60.056 1 83.87 ? H51N NAP 1379 A 1 HETATM 61 H H52N NAP . . . C 2 58.298 -7.877 60.011 1 83.87 ? H52N NAP 1379 A 1 HETATM 62 H H4D NAP . . . C 2 60.431 -7.042 58.023 1 86.04 ? H4D NAP 1379 A 1 HETATM 63 H H3D NAP . . . C 2 59.115 -9.588 58.831 1 83.95 ? H3D NAP 1379 A 1 HETATM 64 H HO3N NAP . . . C 2 59.724 -10.036 56.613 1 78.68 ? HO3N NAP 1379 A 1 HETATM 65 H H2D NAP . . . C 2 61 -10.659 59.413 1 88.25 ? H2D NAP 1379 A 1 HETATM 66 H HO2N NAP . . . C 2 61.497 -10.873 57.127 1 89.2 ? HO2N NAP 1379 A 1 HETATM 67 H H1D NAP . . . C 2 62.862 -8.407 58.979 1 92.26 ? H1D NAP 1379 A 1 HETATM 68 H H2N NAP . . . C 2 61.316 -8.172 62.063 1 95.84 ? H2N NAP 1379 A 1 HETATM 69 H H71N NAP . . . C 2 61.833 -9.478 66.506 1 64.36 ? H71N NAP 1379 A 1 HETATM 70 H H72N NAP . . . C 2 62.644 -10.683 65.531 1 64.36 ? H72N NAP 1379 A 1 HETATM 71 H H4N NAP . . . C 2 63.949 -10.903 64.056 1 100.23 ? H4N NAP 1379 A 1 HETATM 72 H H5N NAP . . . C 2 64.78 -11.639 61.835 1 105.51 ? H5N NAP 1379 A 1 HETATM 73 H H6N NAP . . . C 2 63.852 -10.617 59.785 1 104.77 ? H6N NAP 1379 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 73 #