data_3ZBR # _model_server_result.job_id pgawe1IckyuRCsUH0B-Rww _model_server_result.datetime_utc '2024-10-19 10:26:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zbr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1379}' # _entry.id 3ZBR # _exptl.entry_id 3ZBR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.26 _cell.angle_gamma 90 _cell.entry_id 3ZBR _cell.length_a 42.1 _cell.length_b 47.1 _cell.length_c 111.17 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZBR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 3ZBR _atom_sites.fract_transf_matrix[1][1] 0.023753 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000108 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008995 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 1379 1379 NAP NAP . D 2 NAP B 1 1379 1379 NAP NAP . E 3 HOH A 1 2001 2001 HOH HOH . E 3 HOH A 2 2002 2002 HOH HOH . E 3 HOH A 3 2003 2003 HOH HOH . E 3 HOH A 4 2004 2004 HOH HOH . E 3 HOH A 5 2005 2005 HOH HOH . E 3 HOH A 6 2006 2006 HOH HOH . E 3 HOH A 7 2007 2007 HOH HOH . E 3 HOH A 8 2008 2008 HOH HOH . E 3 HOH A 9 2009 2009 HOH HOH . E 3 HOH A 10 2010 2010 HOH HOH . E 3 HOH A 11 2011 2011 HOH HOH . E 3 HOH A 12 2012 2012 HOH HOH . E 3 HOH A 13 2013 2013 HOH HOH . E 3 HOH A 14 2014 2014 HOH HOH . E 3 HOH A 15 2015 2015 HOH HOH . E 3 HOH A 16 2016 2016 HOH HOH . E 3 HOH A 17 2017 2017 HOH HOH . E 3 HOH A 18 2018 2018 HOH HOH . E 3 HOH A 19 2019 2019 HOH HOH . E 3 HOH A 20 2020 2020 HOH HOH . E 3 HOH A 21 2021 2021 HOH HOH . E 3 HOH A 22 2022 2022 HOH HOH . E 3 HOH A 23 2023 2023 HOH HOH . E 3 HOH A 24 2024 2024 HOH HOH . E 3 HOH A 25 2025 2025 HOH HOH . E 3 HOH A 26 2026 2026 HOH HOH . E 3 HOH A 27 2027 2027 HOH HOH . E 3 HOH A 28 2028 2028 HOH HOH . E 3 HOH A 29 2029 2029 HOH HOH . E 3 HOH A 30 2030 2030 HOH HOH . E 3 HOH A 31 2031 2031 HOH HOH . E 3 HOH A 32 2032 2032 HOH HOH . E 3 HOH A 33 2033 2033 HOH HOH . E 3 HOH A 34 2034 2034 HOH HOH . E 3 HOH A 35 2035 2035 HOH HOH . E 3 HOH A 36 2036 2036 HOH HOH . E 3 HOH A 37 2037 2037 HOH HOH . E 3 HOH A 38 2038 2038 HOH HOH . E 3 HOH A 39 2039 2039 HOH HOH . E 3 HOH A 40 2040 2040 HOH HOH . E 3 HOH A 41 2041 2041 HOH HOH . E 3 HOH A 42 2042 2042 HOH HOH . E 3 HOH A 43 2043 2043 HOH HOH . E 3 HOH A 44 2044 2044 HOH HOH . E 3 HOH A 45 2045 2045 HOH HOH . E 3 HOH A 46 2046 2046 HOH HOH . E 3 HOH A 47 2047 2047 HOH HOH . E 3 HOH A 48 2048 2048 HOH HOH . E 3 HOH A 49 2049 2049 HOH HOH . E 3 HOH A 50 2050 2050 HOH HOH . E 3 HOH A 51 2051 2051 HOH HOH . F 3 HOH B 1 2001 2001 HOH HOH . F 3 HOH B 2 2002 2002 HOH HOH . F 3 HOH B 3 2003 2003 HOH HOH . F 3 HOH B 4 2004 2004 HOH HOH . F 3 HOH B 5 2005 2005 HOH HOH . F 3 HOH B 6 2006 2006 HOH HOH . F 3 HOH B 7 2007 2007 HOH HOH . F 3 HOH B 8 2008 2008 HOH HOH . F 3 HOH B 9 2009 2009 HOH HOH . F 3 HOH B 10 2010 2010 HOH HOH . F 3 HOH B 11 2011 2011 HOH HOH . F 3 HOH B 12 2012 2012 HOH HOH . F 3 HOH B 13 2013 2013 HOH HOH . F 3 HOH B 14 2014 2014 HOH HOH . F 3 HOH B 15 2015 2015 HOH HOH . F 3 HOH B 16 2016 2016 HOH HOH . F 3 HOH B 17 2017 2017 HOH HOH . F 3 HOH B 18 2018 2018 HOH HOH . F 3 HOH B 19 2019 2019 HOH HOH . F 3 HOH B 20 2020 2020 HOH HOH . F 3 HOH B 21 2021 2021 HOH HOH . F 3 HOH B 22 2022 2022 HOH HOH . F 3 HOH B 23 2023 2023 HOH HOH . F 3 HOH B 24 2024 2024 HOH HOH . F 3 HOH B 25 2025 2025 HOH HOH . F 3 HOH B 26 2026 2026 HOH HOH . F 3 HOH B 27 2027 2027 HOH HOH . F 3 HOH B 28 2028 2028 HOH HOH . F 3 HOH B 29 2029 2029 HOH HOH . F 3 HOH B 30 2030 2030 HOH HOH . F 3 HOH B 31 2031 2031 HOH HOH . F 3 HOH B 32 2032 2032 HOH HOH . F 3 HOH B 33 2033 2033 HOH HOH . F 3 HOH B 34 2034 2034 HOH HOH . F 3 HOH B 35 2035 2035 HOH HOH . F 3 HOH B 36 2036 2036 HOH HOH . F 3 HOH B 37 2037 2037 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . D 2 34.766 -25.022 -1.732 1 66.18 ? PA NAP 1379 B 1 HETATM 2 O O1A NAP . . . D 2 33.478 -25.597 -1.193 1 66.15 ? O1A NAP 1379 B 1 HETATM 3 O O2A NAP . . . D 2 34.748 -24.241 -3.023 1 63.33 ? O2A NAP 1379 B 1 HETATM 4 O O5B NAP . . . D 2 35.398 -24.076 -0.591 1 54.37 ? O5B NAP 1379 B 1 HETATM 5 C C5B NAP . . . D 2 34.758 -22.831 -0.322 1 49.93 ? C5B NAP 1379 B 1 HETATM 6 C C4B NAP . . . D 2 35.211 -22.219 0.997 1 41.84 ? C4B NAP 1379 B 1 HETATM 7 O O4B NAP . . . D 2 34.044 -21.718 1.658 1 45.89 ? O4B NAP 1379 B 1 HETATM 8 C C3B NAP . . . D 2 35.865 -23.198 1.961 1 31.54 ? C3B NAP 1379 B 1 HETATM 9 O O3B NAP . . . D 2 37.288 -23.091 1.919 1 25.96 ? O3B NAP 1379 B 1 HETATM 10 C C2B NAP . . . D 2 35.328 -22.779 3.309 1 39.64 ? C2B NAP 1379 B 1 HETATM 11 O O2B NAP . . . D 2 36.173 -21.742 3.806 1 45.39 ? O2B NAP 1379 B 1 HETATM 12 C C1B NAP . . . D 2 33.95 -22.236 2.987 1 44.58 ? C1B NAP 1379 B 1 HETATM 13 N N9A NAP . . . D 2 32.929 -23.318 2.995 1 45.72 ? N9A NAP 1379 B 1 HETATM 14 C C8A NAP . . . D 2 32.927 -24.378 2.16 1 47.24 ? C8A NAP 1379 B 1 HETATM 15 N N7A NAP . . . D 2 31.869 -25.189 2.407 1 46.83 ? N7A NAP 1379 B 1 HETATM 16 C C5A NAP . . . D 2 31.168 -24.649 3.418 1 42.25 ? C5A NAP 1379 B 1 HETATM 17 C C6A NAP . . . D 2 29.939 -25.004 4.165 1 33.19 ? C6A NAP 1379 B 1 HETATM 18 N N6A NAP . . . D 2 29.239 -26.129 3.868 1 28.06 ? N6A NAP 1379 B 1 HETATM 19 N N1A NAP . . . D 2 29.547 -24.167 5.151 1 30.01 ? N1A NAP 1379 B 1 HETATM 20 C C2A NAP . . . D 2 30.233 -23.048 5.461 1 25.51 ? C2A NAP 1379 B 1 HETATM 21 N N3A NAP . . . D 2 31.355 -22.67 4.817 1 27.79 ? N3A NAP 1379 B 1 HETATM 22 C C4A NAP . . . D 2 31.869 -23.414 3.807 1 39.67 ? C4A NAP 1379 B 1 HETATM 23 O O3 NAP . . . D 2 35.816 -26.239 -1.885 1 209.22 ? O3 NAP 1379 B 1 HETATM 24 P PN NAP . . . D 2 37.409 -25.996 -1.874 1 61.93 ? PN NAP 1379 B 1 HETATM 25 O O1N NAP . . . D 2 37.775 -25.129 -0.694 1 63.85 ? O1N NAP 1379 B 1 HETATM 26 O O2N NAP . . . D 2 38.085 -27.333 -2.069 1 58.48 ? O2N NAP 1379 B 1 HETATM 27 O O5D NAP . . . D 2 37.627 -25.132 -3.209 1 51.35 ? O5D NAP 1379 B 1 HETATM 28 C C5D NAP . . . D 2 38.062 -23.787 -3.055 1 53.08 ? C5D NAP 1379 B 1 HETATM 29 C C4D NAP . . . D 2 38.237 -23.111 -4.406 1 59.02 ? C4D NAP 1379 B 1 HETATM 30 O O4D NAP . . . D 2 38.183 -21.701 -4.197 1 63.47 ? O4D NAP 1379 B 1 HETATM 31 C C3D NAP . . . D 2 39.58 -23.443 -5.032 1 61.84 ? C3D NAP 1379 B 1 HETATM 32 O O3D NAP . . . D 2 39.439 -23.692 -6.435 1 57.84 ? O3D NAP 1379 B 1 HETATM 33 C C2D NAP . . . D 2 40.434 -22.218 -4.773 1 68.99 ? C2D NAP 1379 B 1 HETATM 34 O O2D NAP . . . D 2 41.173 -21.85 -5.941 1 74.81 ? O2D NAP 1379 B 1 HETATM 35 C C1D NAP . . . D 2 39.471 -21.109 -4.38 1 67.12 ? C1D NAP 1379 B 1 HETATM 36 N N1N NAP . . . D 2 39.908 -20.476 -3.131 1 67.43 ? N1N NAP 1379 B 1 HETATM 37 C C2N NAP . . . D 2 40.943 -19.625 -3.16 1 65.39 ? C2N NAP 1379 B 1 HETATM 38 C C3N NAP . . . D 2 41.387 -19.008 -1.994 1 62.64 ? C3N NAP 1379 B 1 HETATM 39 C C7N NAP . . . D 2 42.548 -18.054 -2.023 1 58.21 ? C7N NAP 1379 B 1 HETATM 40 O O7N NAP . . . D 2 42.762 -17.345 -1.052 1 54.83 ? O7N NAP 1379 B 1 HETATM 41 N N7N NAP . . . D 2 43.332 -17.999 -3.1 1 58.51 ? N7N NAP 1379 B 1 HETATM 42 C C4N NAP . . . D 2 40.747 -19.289 -0.794 1 63.46 ? C4N NAP 1379 B 1 HETATM 43 C C5N NAP . . . D 2 39.678 -20.174 -0.79 1 64.69 ? C5N NAP 1379 B 1 HETATM 44 C C6N NAP . . . D 2 39.277 -20.763 -1.983 1 65.96 ? C6N NAP 1379 B 1 HETATM 45 P P2B NAP . . . D 2 36.637 -21.585 5.342 1 46.27 ? P2B NAP 1379 B 1 HETATM 46 O O1X NAP . . . D 2 38.138 -21.721 5.259 1 46.61 ? O1X NAP 1379 B 1 HETATM 47 O O2X NAP . . . D 2 35.945 -22.708 6.076 1 42.01 ? O2X NAP 1379 B 1 HETATM 48 O O3X NAP . . . D 2 36.154 -20.209 5.737 1 45.89 ? O3X NAP 1379 B 1 HETATM 49 H H51A NAP . . . D 2 33.677 -22.983 -0.295 1 59.92 ? H51A NAP 1379 B 1 HETATM 50 H H52A NAP . . . D 2 34.973 -22.134 -1.134 1 59.92 ? H52A NAP 1379 B 1 HETATM 51 H H4B NAP . . . D 2 35.911 -21.397 0.79 1 50.21 ? H4B NAP 1379 B 1 HETATM 52 H H3B NAP . . . D 2 35.538 -24.222 1.731 1 37.85 ? H3B NAP 1379 B 1 HETATM 53 H HO3A NAP . . . D 2 37.606 -23.365 1.048 1 31.15 ? HO3A NAP 1379 B 1 HETATM 54 H H2B NAP . . . D 2 35.267 -23.636 3.994 1 47.57 ? H2B NAP 1379 B 1 HETATM 55 H H1B NAP . . . D 2 33.688 -21.441 3.699 1 53.5 ? H1B NAP 1379 B 1 HETATM 56 H H8A NAP . . . D 2 33.673 -24.558 1.395 1 56.69 ? H8A NAP 1379 B 1 HETATM 57 H H61A NAP . . . D 2 28.404 -26.356 4.388 1 33.67 ? H61A NAP 1379 B 1 HETATM 58 H H62A NAP . . . D 2 29.553 -26.738 3.126 1 33.67 ? H62A NAP 1379 B 1 HETATM 59 H H2A NAP . . . D 2 29.862 -22.421 6.262 1 30.61 ? H2A NAP 1379 B 1 HETATM 60 H H51N NAP . . . D 2 37.33 -23.234 -2.464 1 63.69 ? H51N NAP 1379 B 1 HETATM 61 H H52N NAP . . . D 2 39.011 -23.771 -2.515 1 63.69 ? H52N NAP 1379 B 1 HETATM 62 H H4D NAP . . . D 2 37.431 -23.431 -5.082 1 70.82 ? H4D NAP 1379 B 1 HETATM 63 H H3D NAP . . . D 2 40.019 -24.313 -4.523 1 74.21 ? H3D NAP 1379 B 1 HETATM 64 H HO3N NAP . . . D 2 40.304 -23.9 -6.814 1 69.41 ? HO3N NAP 1379 B 1 HETATM 65 H H2D NAP . . . D 2 41.116 -22.421 -3.935 1 82.79 ? H2D NAP 1379 B 1 HETATM 66 H HO2N NAP . . . D 2 41.767 -22.572 -6.187 1 89.77 ? HO2N NAP 1379 B 1 HETATM 67 H H1D NAP . . . D 2 39.433 -20.365 -5.188 1 80.54 ? H1D NAP 1379 B 1 HETATM 68 H H2N NAP . . . D 2 41.438 -19.413 -4.1 1 78.47 ? H2N NAP 1379 B 1 HETATM 69 H H71N NAP . . . D 2 43.142 -18.595 -3.893 1 70.21 ? H71N NAP 1379 B 1 HETATM 70 H H72N NAP . . . D 2 44.114 -17.361 -3.123 1 70.21 ? H72N NAP 1379 B 1 HETATM 71 H H4N NAP . . . D 2 41.075 -18.82 0.126 1 76.15 ? H4N NAP 1379 B 1 HETATM 72 H H5N NAP . . . D 2 39.164 -20.406 0.135 1 77.63 ? H5N NAP 1379 B 1 HETATM 73 H H6N NAP . . . D 2 38.443 -21.454 -1.987 1 79.16 ? H6N NAP 1379 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 73 #