data_3ZCI # _model_server_result.job_id hQHBxQ3MmQE18uWKvL6aHg _model_server_result.datetime_utc '2024-11-14 06:08:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zci # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1233}' # _entry.id 3ZCI # _exptl.entry_id 3ZCI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.105 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIETHYLENE DIOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ZCI _cell.length_a 181.002 _cell.length_b 181.002 _cell.length_c 181.002 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZCI _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 2 A ALA 19 1_555 A N MSE 3 A MSE 20 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A C ALA 2 A ALA 19 1_555 A N MSE 3 A MSE 20 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.347 ? covale ? covale3 A C MSE 3 A MSE 20 1_555 A N GLU 4 A GLU 21 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 A C MSE 3 A MSE 20 1_555 A N GLU 4 A GLU 21 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C GLU 42 A GLU 59 1_555 A N MSE 43 A MSE 60 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C MSE 43 A MSE 60 1_555 A N GLY 44 A GLY 61 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C MSE 43 A MSE 60 1_555 A N GLY 44 A GLY 61 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.325 ? covale ? covale8 A C TYR 86 A TYR 103 1_555 A N MSE 87 A MSE 104 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.332 ? covale ? covale9 A C TYR 86 A TYR 103 1_555 A N MSE 87 A MSE 104 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.325 ? covale ? covale10 A C MSE 87 A MSE 104 1_555 A N SER 88 A SER 105 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.326 ? covale ? covale11 A C MSE 87 A MSE 104 1_555 A N SER 88 A SER 105 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.332 ? covale ? covale12 A C TYR 96 A TYR 113 1_555 A N MSE 97 A MSE 114 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.327 ? covale ? covale13 A C TYR 96 A TYR 113 1_555 A N MSE 97 A MSE 114 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.33 ? covale ? covale14 A C MSE 97 A MSE 114 1_555 A N LYS 98 A LYS 115 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.334 ? covale ? covale15 A C MSE 97 A MSE 114 1_555 A N LYS 98 A LYS 115 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.331 ? covale ? covale16 A C LEU 179 A LEU 196 1_555 A N MSE 180 A MSE 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale17 A C MSE 180 A MSE 197 1_555 A N LEU 181 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C4 H8 O2' _chem_comp.formula_weight 88.105 _chem_comp.id DIO _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIETHYLENE DIOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C1' DIO sing 98 n n C1 O1 DIO sing 99 n n C1 H11 DIO sing 100 n n C1 H12 DIO sing 101 n n C2 C2' DIO sing 102 n n C2 O1 DIO sing 103 n n C2 H21 DIO sing 104 n n C2 H22 DIO sing 105 n n C1' O1' DIO sing 106 n n C1' "H1'1" DIO sing 107 n n C1' "H1'2" DIO sing 108 n n C2' O1' DIO sing 109 n n C2' "H2'1" DIO sing 110 n n C2' "H2'2" DIO sing 111 n n # _atom_sites.entry_id 3ZCI _atom_sites.fract_transf_matrix[1][1] 0.005525 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005525 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1230 1230 SO4 SO4 . C 2 SO4 A 1 1231 1231 SO4 SO4 . D 2 SO4 A 1 1232 1232 SO4 SO4 . E 3 DIO A 1 1233 1233 DIO DIO . F 3 DIO A 1 1234 1234 DIO DIO . G 4 BU9 A 1 1235 1235 BU9 BU9 . H 3 DIO A 1 1236 1236 DIO DIO . I 5 CL A 1 1237 1237 CL CL . J 4 BU9 A 1 1238 1238 BU9 BU9 . K 4 BU9 A 1 1239 1239 BU9 BU9 . L 6 HOH A 1 2001 2001 HOH HOH . L 6 HOH A 2 2002 2002 HOH HOH . L 6 HOH A 3 2003 2003 HOH HOH . L 6 HOH A 4 2004 2004 HOH HOH . L 6 HOH A 5 2005 2005 HOH HOH . L 6 HOH A 6 2006 2006 HOH HOH . L 6 HOH A 7 2007 2007 HOH HOH . L 6 HOH A 8 2008 2008 HOH HOH . L 6 HOH A 9 2009 2009 HOH HOH . L 6 HOH A 10 2010 2010 HOH HOH . L 6 HOH A 11 2011 2011 HOH HOH . L 6 HOH A 12 2012 2012 HOH HOH . L 6 HOH A 13 2013 2013 HOH HOH . L 6 HOH A 14 2014 2014 HOH HOH . L 6 HOH A 15 2015 2015 HOH HOH . L 6 HOH A 16 2016 2016 HOH HOH . L 6 HOH A 17 2017 2017 HOH HOH . L 6 HOH A 18 2018 2018 HOH HOH . L 6 HOH A 19 2019 2019 HOH HOH . L 6 HOH A 20 2020 2020 HOH HOH . L 6 HOH A 21 2021 2021 HOH HOH . L 6 HOH A 22 2022 2022 HOH HOH . L 6 HOH A 23 2023 2023 HOH HOH . L 6 HOH A 24 2024 2024 HOH HOH . L 6 HOH A 25 2025 2025 HOH HOH . L 6 HOH A 26 2026 2026 HOH HOH . L 6 HOH A 27 2027 2027 HOH HOH . L 6 HOH A 28 2028 2028 HOH HOH . L 6 HOH A 29 2029 2029 HOH HOH . L 6 HOH A 30 2030 2030 HOH HOH . L 6 HOH A 31 2031 2031 HOH HOH . L 6 HOH A 32 2032 2032 HOH HOH . L 6 HOH A 33 2033 2033 HOH HOH . L 6 HOH A 34 2034 2034 HOH HOH . L 6 HOH A 35 2035 2035 HOH HOH . L 6 HOH A 36 2036 2036 HOH HOH . L 6 HOH A 37 2037 2037 HOH HOH . L 6 HOH A 38 2038 2038 HOH HOH . L 6 HOH A 39 2039 2039 HOH HOH . L 6 HOH A 40 2040 2040 HOH HOH . L 6 HOH A 41 2041 2041 HOH HOH . L 6 HOH A 42 2042 2042 HOH HOH . L 6 HOH A 43 2043 2043 HOH HOH . L 6 HOH A 44 2044 2044 HOH HOH . L 6 HOH A 45 2045 2045 HOH HOH . L 6 HOH A 46 2046 2046 HOH HOH . L 6 HOH A 47 2047 2047 HOH HOH . L 6 HOH A 48 2048 2048 HOH HOH . L 6 HOH A 49 2049 2049 HOH HOH . L 6 HOH A 50 2050 2050 HOH HOH . L 6 HOH A 51 2051 2051 HOH HOH . L 6 HOH A 52 2052 2052 HOH HOH . L 6 HOH A 53 2053 2053 HOH HOH . L 6 HOH A 54 2054 2054 HOH HOH . L 6 HOH A 55 2055 2055 HOH HOH . L 6 HOH A 56 2056 2056 HOH HOH . L 6 HOH A 57 2057 2057 HOH HOH . L 6 HOH A 58 2058 2058 HOH HOH . L 6 HOH A 59 2059 2059 HOH HOH . L 6 HOH A 60 2060 2060 HOH HOH . L 6 HOH A 61 2061 2061 HOH HOH . L 6 HOH A 62 2062 2062 HOH HOH . L 6 HOH A 63 2063 2063 HOH HOH . L 6 HOH A 64 2064 2064 HOH HOH . L 6 HOH A 65 2065 2065 HOH HOH . L 6 HOH A 66 2066 2066 HOH HOH . L 6 HOH A 67 2067 2067 HOH HOH . L 6 HOH A 68 2068 2068 HOH HOH . L 6 HOH A 69 2069 2069 HOH HOH . L 6 HOH A 70 2070 2070 HOH HOH . L 6 HOH A 71 2071 2071 HOH HOH . L 6 HOH A 72 2072 2072 HOH HOH . L 6 HOH A 73 2073 2073 HOH HOH . L 6 HOH A 74 2074 2074 HOH HOH . L 6 HOH A 75 2075 2075 HOH HOH . L 6 HOH A 76 2076 2076 HOH HOH . L 6 HOH A 77 2077 2077 HOH HOH . L 6 HOH A 78 2078 2078 HOH HOH . L 6 HOH A 79 2079 2079 HOH HOH . L 6 HOH A 80 2080 2080 HOH HOH . L 6 HOH A 81 2081 2081 HOH HOH . L 6 HOH A 82 2082 2082 HOH HOH . L 6 HOH A 83 2083 2083 HOH HOH . L 6 HOH A 84 2084 2084 HOH HOH . L 6 HOH A 85 2085 2085 HOH HOH . L 6 HOH A 86 2086 2086 HOH HOH . L 6 HOH A 87 2087 2087 HOH HOH . L 6 HOH A 88 2088 2088 HOH HOH . L 6 HOH A 89 2089 2089 HOH HOH . L 6 HOH A 90 2090 2090 HOH HOH . L 6 HOH A 91 2091 2091 HOH HOH . L 6 HOH A 92 2092 2092 HOH HOH . L 6 HOH A 93 2093 2093 HOH HOH . L 6 HOH A 94 2094 2094 HOH HOH . L 6 HOH A 95 2095 2095 HOH HOH . L 6 HOH A 96 2096 2096 HOH HOH . L 6 HOH A 97 2097 2097 HOH HOH . L 6 HOH A 98 2098 2098 HOH HOH . L 6 HOH A 99 2099 2099 HOH HOH . L 6 HOH A 100 2100 2100 HOH HOH . L 6 HOH A 101 2101 2101 HOH HOH . L 6 HOH A 102 2102 2102 HOH HOH . L 6 HOH A 103 2103 2103 HOH HOH . L 6 HOH A 104 2104 2104 HOH HOH . L 6 HOH A 105 2105 2105 HOH HOH . L 6 HOH A 106 2106 2106 HOH HOH . L 6 HOH A 107 2107 2107 HOH HOH . L 6 HOH A 108 2108 2108 HOH HOH . L 6 HOH A 109 2109 2109 HOH HOH . L 6 HOH A 110 2110 2110 HOH HOH . L 6 HOH A 111 2111 2111 HOH HOH . L 6 HOH A 112 2112 2112 HOH HOH . L 6 HOH A 113 2113 2113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DIO . . . E 3 9.119 36.445 109.906 0.91 37.27 ? C1 DIO 1233 A 1 HETATM 2 C C2 DIO . . . E 3 8.908 37.999 108.342 0.91 44.23 ? C2 DIO 1233 A 1 HETATM 3 C C1' DIO . . . E 3 9.644 37.547 110.786 0.91 57.98 ? C1' DIO 1233 A 1 HETATM 4 C C2' DIO . . . E 3 9.133 39.126 109.302 0.91 33.59 ? C2' DIO 1233 A 1 HETATM 5 O O1 DIO . . . E 3 8.262 36.944 108.95 0.91 42.84 ? O1 DIO 1233 A 1 HETATM 6 O O1' DIO . . . E 3 8.946 38.727 110.598 0.91 51.38 ? O1' DIO 1233 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #