data_3ZCM # _model_server_result.job_id 5EFIt7pfB53s54FpDTByzQ _model_server_result.datetime_utc '2024-11-08 05:49:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zcm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1216}' # _entry.id 3ZCM # _exptl.entry_id 3ZCM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 488.532 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[[[2-[(4-methoxyphenyl)methylcarbamoyl]phenyl]methyl-prop-2-enyl-amino]methyl]-1,3-benzodioxole-4-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ZCM _cell.length_a 70.855 _cell.length_b 70.855 _cell.length_c 67.132 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZCM _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 N N N # _chem_comp.formula 'C28 H28 N2 O6' _chem_comp.formula_weight 488.532 _chem_comp.id PX3 _chem_comp.mon_nstd_flag . _chem_comp.name '5-[[[2-[(4-methoxyphenyl)methylcarbamoyl]phenyl]methyl-prop-2-enyl-amino]methyl]-1,3-benzodioxole-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PX3 sing 296 n y C1 C3 PX3 doub 297 n y C2 C4 PX3 doub 298 n y C3 C11 PX3 sing 299 n y C4 C14 PX3 sing 300 n y C5 C8 PX3 sing 301 n y C5 C15 PX3 doub 302 n y C6 C9 PX3 sing 303 n y C6 C13 PX3 doub 304 n y C7 C10 PX3 doub 305 n y C7 C13 PX3 sing 306 n y C8 C16 PX3 doub 307 n y C9 C18 PX3 doub 308 n y C10 C18 PX3 sing 309 n y C11 C14 PX3 doub 310 n y C11 C21 PX3 sing 311 n n C12 C15 PX3 sing 312 n y C12 C17 PX3 doub 313 n y C12 C22 PX3 sing 314 n n C13 C24 PX3 sing 315 n n C14 C26 PX3 sing 316 n n C24 N32 PX3 sing 317 n n C15 C27 PX3 sing 318 n n C16 C17 PX3 sing 319 n y C16 O37 PX3 sing 320 n n C17 O38 PX3 sing 321 n n C18 O39 PX3 sing 322 n n C19 C20 PX3 doub 323 n n C20 C28 PX3 sing 324 n n C21 N32 PX3 sing 325 n n C21 O35 PX3 doub 326 n n C22 O34 PX3 sing 327 n n C22 O36 PX3 doub 328 n n C23 O37 PX3 sing 329 n n C23 O38 PX3 sing 330 n n C25 O39 PX3 sing 331 n n C26 N33 PX3 sing 332 n n C27 N33 PX3 sing 333 n n C28 N33 PX3 sing 334 n n C1 H1 PX3 sing 335 n n C2 H2 PX3 sing 336 n n C3 H3 PX3 sing 337 n n C4 H4 PX3 sing 338 n n C5 H5 PX3 sing 339 n n C8 H8 PX3 sing 340 n n C6 H6 PX3 sing 341 n n C9 H9 PX3 sing 342 n n C7 H7 PX3 sing 343 n n C10 H10 PX3 sing 344 n n C24 H241 PX3 sing 345 n n C24 H242 PX3 sing 346 n n C26 H261 PX3 sing 347 n n C26 H262 PX3 sing 348 n n N32 H32 PX3 sing 349 n n C27 H271 PX3 sing 350 n n C27 H272 PX3 sing 351 n n C19 H191 PX3 sing 352 n n C19 H192 PX3 sing 353 n n C20 H20 PX3 sing 354 n n C28 H281 PX3 sing 355 n n C28 H282 PX3 sing 356 n n O34 H34 PX3 sing 357 n n C23 H231 PX3 sing 358 n n C23 H232 PX3 sing 359 n n C25 H251 PX3 sing 360 n n C25 H252 PX3 sing 361 n n C25 H253 PX3 sing 362 n n # _atom_sites.entry_id 3ZCM _atom_sites.fract_transf_matrix[1][1] 0.014113 _atom_sites.fract_transf_matrix[1][2] 0.008148 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016297 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014896 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1210 1210 SO4 SO4 . D 2 SO4 A 1 1211 1211 SO4 SO4 . E 2 SO4 A 1 1212 1212 SO4 SO4 . F 3 GOL A 1 1213 1213 GOL GOL . G 4 PX3 A 1 1214 1214 PX3 PX3 . H 2 SO4 B 1 1210 1210 SO4 SO4 . I 2 SO4 B 1 1211 1211 SO4 SO4 . J 2 SO4 B 1 1212 1212 SO4 SO4 . K 5 ACT B 1 1213 1213 ACT ACT . L 5 ACT B 1 1214 1214 ACT ACT . M 3 GOL B 1 1215 1215 GOL GOL . N 4 PX3 B 1 1216 1216 PX3 PX3 . O 6 HOH A 1 2001 2001 HOH HOH . O 6 HOH A 2 2002 2002 HOH HOH . O 6 HOH A 3 2003 2003 HOH HOH . O 6 HOH A 4 2004 2004 HOH HOH . O 6 HOH A 5 2005 2005 HOH HOH . O 6 HOH A 6 2006 2006 HOH HOH . O 6 HOH A 7 2007 2007 HOH HOH . O 6 HOH A 8 2008 2008 HOH HOH . O 6 HOH A 9 2009 2009 HOH HOH . O 6 HOH A 10 2010 2010 HOH HOH . O 6 HOH A 11 2011 2011 HOH HOH . O 6 HOH A 12 2012 2012 HOH HOH . O 6 HOH A 13 2013 2013 HOH HOH . O 6 HOH A 14 2014 2014 HOH HOH . O 6 HOH A 15 2015 2015 HOH HOH . O 6 HOH A 16 2016 2016 HOH HOH . O 6 HOH A 17 2017 2017 HOH HOH . O 6 HOH A 18 2018 2018 HOH HOH . O 6 HOH A 19 2019 2019 HOH HOH . O 6 HOH A 20 2020 2020 HOH HOH . O 6 HOH A 21 2021 2021 HOH HOH . O 6 HOH A 22 2022 2022 HOH HOH . O 6 HOH A 23 2023 2023 HOH HOH . O 6 HOH A 24 2024 2024 HOH HOH . O 6 HOH A 25 2025 2025 HOH HOH . O 6 HOH A 26 2026 2026 HOH HOH . O 6 HOH A 27 2027 2027 HOH HOH . O 6 HOH A 28 2028 2028 HOH HOH . O 6 HOH A 29 2029 2029 HOH HOH . O 6 HOH A 30 2030 2030 HOH HOH . O 6 HOH A 31 2031 2031 HOH HOH . O 6 HOH A 32 2032 2032 HOH HOH . O 6 HOH A 33 2033 2033 HOH HOH . O 6 HOH A 34 2034 2034 HOH HOH . O 6 HOH A 35 2035 2035 HOH HOH . O 6 HOH A 36 2036 2036 HOH HOH . O 6 HOH A 37 2037 2037 HOH HOH . O 6 HOH A 38 2038 2038 HOH HOH . O 6 HOH A 39 2039 2039 HOH HOH . O 6 HOH A 40 2040 2040 HOH HOH . O 6 HOH A 41 2041 2041 HOH HOH . O 6 HOH A 42 2042 2042 HOH HOH . O 6 HOH A 43 2043 2043 HOH HOH . O 6 HOH A 44 2044 2044 HOH HOH . O 6 HOH A 45 2045 2045 HOH HOH . O 6 HOH A 46 2046 2046 HOH HOH . O 6 HOH A 47 2047 2047 HOH HOH . O 6 HOH A 48 2048 2048 HOH HOH . O 6 HOH A 49 2049 2049 HOH HOH . O 6 HOH A 50 2050 2050 HOH HOH . O 6 HOH A 51 2051 2051 HOH HOH . O 6 HOH A 52 2052 2052 HOH HOH . O 6 HOH A 53 2053 2053 HOH HOH . O 6 HOH A 54 2054 2054 HOH HOH . O 6 HOH A 55 2055 2055 HOH HOH . O 6 HOH A 56 2056 2056 HOH HOH . O 6 HOH A 57 2057 2057 HOH HOH . O 6 HOH A 58 2058 2058 HOH HOH . O 6 HOH A 59 2059 2059 HOH HOH . O 6 HOH A 60 2060 2060 HOH HOH . O 6 HOH A 61 2061 2061 HOH HOH . O 6 HOH A 62 2062 2062 HOH HOH . O 6 HOH A 63 2063 2063 HOH HOH . O 6 HOH A 64 2064 2064 HOH HOH . O 6 HOH A 65 2065 2065 HOH HOH . O 6 HOH A 66 2066 2066 HOH HOH . O 6 HOH A 67 2067 2067 HOH HOH . O 6 HOH A 68 2068 2068 HOH HOH . O 6 HOH A 69 2069 2069 HOH HOH . O 6 HOH A 70 2070 2070 HOH HOH . O 6 HOH A 71 2071 2071 HOH HOH . O 6 HOH A 72 2072 2072 HOH HOH . O 6 HOH A 73 2073 2073 HOH HOH . O 6 HOH A 74 2074 2074 HOH HOH . O 6 HOH A 75 2075 2075 HOH HOH . O 6 HOH A 76 2076 2076 HOH HOH . O 6 HOH A 77 2077 2077 HOH HOH . O 6 HOH A 78 2078 2078 HOH HOH . O 6 HOH A 79 2079 2079 HOH HOH . O 6 HOH A 80 2080 2080 HOH HOH . O 6 HOH A 81 2081 2081 HOH HOH . O 6 HOH A 82 2082 2082 HOH HOH . O 6 HOH A 83 2083 2083 HOH HOH . O 6 HOH A 84 2084 2084 HOH HOH . O 6 HOH A 85 2085 2085 HOH HOH . P 6 HOH B 1 2001 2001 HOH HOH . P 6 HOH B 2 2002 2002 HOH HOH . P 6 HOH B 3 2003 2003 HOH HOH . P 6 HOH B 4 2004 2004 HOH HOH . P 6 HOH B 5 2005 2005 HOH HOH . P 6 HOH B 6 2006 2006 HOH HOH . P 6 HOH B 7 2007 2007 HOH HOH . P 6 HOH B 8 2008 2008 HOH HOH . P 6 HOH B 9 2009 2009 HOH HOH . P 6 HOH B 10 2010 2010 HOH HOH . P 6 HOH B 11 2011 2011 HOH HOH . P 6 HOH B 12 2012 2012 HOH HOH . P 6 HOH B 13 2013 2013 HOH HOH . P 6 HOH B 14 2014 2014 HOH HOH . P 6 HOH B 15 2015 2015 HOH HOH . P 6 HOH B 16 2016 2016 HOH HOH . P 6 HOH B 17 2017 2017 HOH HOH . P 6 HOH B 18 2018 2018 HOH HOH . P 6 HOH B 19 2019 2019 HOH HOH . P 6 HOH B 20 2020 2020 HOH HOH . P 6 HOH B 21 2021 2021 HOH HOH . P 6 HOH B 22 2022 2022 HOH HOH . P 6 HOH B 23 2023 2023 HOH HOH . P 6 HOH B 24 2024 2024 HOH HOH . P 6 HOH B 25 2025 2025 HOH HOH . P 6 HOH B 26 2026 2026 HOH HOH . P 6 HOH B 27 2027 2027 HOH HOH . P 6 HOH B 28 2028 2028 HOH HOH . P 6 HOH B 29 2029 2029 HOH HOH . P 6 HOH B 30 2030 2030 HOH HOH . P 6 HOH B 31 2031 2031 HOH HOH . P 6 HOH B 32 2032 2032 HOH HOH . P 6 HOH B 33 2033 2033 HOH HOH . P 6 HOH B 34 2034 2034 HOH HOH . P 6 HOH B 35 2035 2035 HOH HOH . P 6 HOH B 36 2036 2036 HOH HOH . P 6 HOH B 37 2037 2037 HOH HOH . P 6 HOH B 38 2038 2038 HOH HOH . P 6 HOH B 39 2039 2039 HOH HOH . P 6 HOH B 40 2040 2040 HOH HOH . P 6 HOH B 41 2041 2041 HOH HOH . P 6 HOH B 42 2042 2042 HOH HOH . P 6 HOH B 43 2043 2043 HOH HOH . P 6 HOH B 44 2044 2044 HOH HOH . P 6 HOH B 45 2045 2045 HOH HOH . P 6 HOH B 46 2046 2046 HOH HOH . P 6 HOH B 47 2047 2047 HOH HOH . P 6 HOH B 48 2048 2048 HOH HOH . P 6 HOH B 49 2049 2049 HOH HOH . P 6 HOH B 50 2050 2050 HOH HOH . P 6 HOH B 51 2051 2051 HOH HOH . P 6 HOH B 52 2052 2052 HOH HOH . P 6 HOH B 53 2053 2053 HOH HOH . P 6 HOH B 54 2054 2054 HOH HOH . P 6 HOH B 55 2055 2055 HOH HOH . P 6 HOH B 56 2056 2056 HOH HOH . P 6 HOH B 57 2057 2057 HOH HOH . P 6 HOH B 58 2058 2058 HOH HOH . P 6 HOH B 59 2059 2059 HOH HOH . P 6 HOH B 60 2060 2060 HOH HOH . P 6 HOH B 61 2061 2061 HOH HOH . P 6 HOH B 62 2062 2062 HOH HOH . P 6 HOH B 63 2063 2063 HOH HOH . P 6 HOH B 64 2064 2064 HOH HOH . P 6 HOH B 65 2065 2065 HOH HOH . P 6 HOH B 66 2066 2066 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PX3 . . . N 4 -36.279 33.527 -19.522 1 21.52 ? C1 PX3 1216 B 1 HETATM 2 C C2 PX3 . . . N 4 -36.459 34.687 -18.839 1 19.9 ? C2 PX3 1216 B 1 HETATM 3 C C3 PX3 . . . N 4 -36.325 32.287 -18.846 1 23.91 ? C3 PX3 1216 B 1 HETATM 4 C C4 PX3 . . . N 4 -36.714 34.655 -17.472 1 24.53 ? C4 PX3 1216 B 1 HETATM 5 C C5 PX3 . . . N 4 -33.648 32.426 -12.233 1 21.23 ? C5 PX3 1216 B 1 HETATM 6 C C6 PX3 . . . N 4 -33.172 29.441 -15.394 1 26.65 ? C6 PX3 1216 B 1 HETATM 7 C C7 PX3 . . . N 4 -34.952 28.658 -14.058 1 20.52 ? C7 PX3 1216 B 1 HETATM 8 C C8 PX3 . . . N 4 -32.707 32.792 -11.241 1 17.53 ? C8 PX3 1216 B 1 HETATM 9 C C9 PX3 . . . N 4 -32.327 29.595 -14.298 1 20.92 ? C9 PX3 1216 B 1 HETATM 10 C C10 PX3 . . . N 4 -34.148 28.816 -12.934 1 20 ? C10 PX3 1216 B 1 HETATM 11 C C11 PX3 . . . N 4 -36.574 32.246 -17.47 1 21.79 ? C11 PX3 1216 B 1 HETATM 12 C C12 PX3 . . . N 4 -32.922 34.279 -13.655 1 15.76 ? C12 PX3 1216 B 1 HETATM 13 C C13 PX3 . . . N 4 -34.469 28.981 -15.306 1 24.62 ? C13 PX3 1216 B 1 HETATM 14 C C14 PX3 . . . N 4 -36.765 33.453 -16.8 1 21.03 ? C14 PX3 1216 B 1 HETATM 15 C C24 PX3 . . . N 4 -35.368 28.804 -16.53 1 22.78 ? C24 PX3 1216 B 1 HETATM 16 C C15 PX3 . . . N 4 -33.762 33.167 -13.43 1 19.98 ? C15 PX3 1216 B 1 HETATM 17 C C16 PX3 . . . N 4 -31.934 33.892 -11.472 1 15.82 ? C16 PX3 1216 B 1 HETATM 18 C C17 PX3 . . . N 4 -32 34.622 -12.657 1 15.79 ? C17 PX3 1216 B 1 HETATM 19 C C18 PX3 . . . N 4 -32.853 29.254 -13.065 1 21.04 ? C18 PX3 1216 B 1 HETATM 20 C C19 PX3 . . . N 4 -38.354 33.367 -11.905 1 32.22 ? C19 PX3 1216 B 1 HETATM 21 C C20 PX3 . . . N 4 -37.076 33.278 -12.336 1 26.2 ? C20 PX3 1216 B 1 HETATM 22 C C21 PX3 . . . N 4 -36.634 30.93 -16.814 1 22.47 ? C21 PX3 1216 B 1 HETATM 23 C C22 PX3 . . . N 4 -32.924 35.088 -14.937 1 17.1 ? C22 PX3 1216 B 1 HETATM 24 C C23 PX3 . . . N 4 -30.372 35.457 -11.393 1 18.04 ? C23 PX3 1216 B 1 HETATM 25 C C25 PX3 . . . N 4 -30.721 29.577 -12.052 1 21.41 ? C25 PX3 1216 B 1 HETATM 26 C C26 PX3 . . . N 4 -37.076 33.491 -15.314 1 21.97 ? C26 PX3 1216 B 1 HETATM 27 C C27 PX3 . . . N 4 -34.801 32.709 -14.412 1 18.8 ? C27 PX3 1216 B 1 HETATM 28 C C28 PX3 . . . N 4 -36.398 34.394 -13.127 1 20.91 ? C28 PX3 1216 B 1 HETATM 29 N N32 PX3 . . . N 4 -35.644 30.094 -17.139 1 20.76 ? N32 PX3 1216 B 1 HETATM 30 N N33 PX3 . . . N 4 -35.871 33.812 -14.425 1 23.33 ? N33 PX3 1216 B 1 HETATM 31 O O34 PX3 . . . N 4 -31.784 35.566 -15.295 1 15.1 ? O34 PX3 1216 B 1 HETATM 32 O O35 PX3 . . . N 4 -37.471 30.591 -15.97 1 24.56 ? O35 PX3 1216 B 1 HETATM 33 O O36 PX3 . . . N 4 -33.982 35.14 -15.611 1 15.7 ? O36 PX3 1216 B 1 HETATM 34 O O37 PX3 . . . N 4 -31.022 34.418 -10.624 1 15.14 ? O37 PX3 1216 B 1 HETATM 35 O O38 PX3 . . . N 4 -31.135 35.682 -12.615 1 17.73 ? O38 PX3 1216 B 1 HETATM 36 O O39 PX3 . . . N 4 -32.137 29.351 -11.849 1 22.38 ? O39 PX3 1216 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 36 #