data_3ZDI # _model_server_result.job_id m-RTF7ITzPBgedVYxJ8wsw _model_server_result.datetime_utc '2025-01-13 00:02:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zdi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1386}' # _entry.id 3ZDI # _exptl.entry_id 3ZDI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 325.776 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6-Diamino-4-(2-chlorophenyl)thieno[2,3-b]pyridine-2,5-dicarbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ZDI _cell.length_a 73.147 _cell.length_b 76.157 _cell.length_c 86.545 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZDI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 181 A SER 215 1_555 A N PTR 182 A PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C PTR 182 A PTR 216 1_555 A N ILE 183 A ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C15 H8 Cl N5 S' _chem_comp.formula_weight 325.776 _chem_comp.id UGJ _chem_comp.mon_nstd_flag . _chem_comp.name 3,6-Diamino-4-(2-chlorophenyl)thieno[2,3-b]pyridine-2,5-dicarbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C02 UGJ sing 391 n n C02 C03 UGJ doub 392 n y C02 C06 UGJ sing 393 n y C03 S04 UGJ sing 394 n y C03 C21 UGJ sing 395 n n S04 C05 UGJ sing 396 n y C05 C06 UGJ sing 397 n y C05 N20 UGJ doub 398 n y C06 C07 UGJ doub 399 n y C07 C08 UGJ sing 400 n n C07 C15 UGJ sing 401 n y C08 C09 UGJ sing 402 n y C08 C13 UGJ doub 403 n y C09 C10 UGJ doub 404 n y C10 C11 UGJ sing 405 n y C11 C12 UGJ doub 406 n y C12 C13 UGJ sing 407 n y C13 CL UGJ sing 408 n n C15 C16 UGJ sing 409 n n C15 C18 UGJ doub 410 n y C16 N17 UGJ trip 411 n n C18 N19 UGJ sing 412 n n C18 N20 UGJ sing 413 n y C21 N22 UGJ trip 414 n n N01 H011 UGJ sing 415 n n N01 H012 UGJ sing 416 n n C09 H09 UGJ sing 417 n n C10 H10 UGJ sing 418 n n C11 H11 UGJ sing 419 n n C12 H12 UGJ sing 420 n n N19 H191 UGJ sing 421 n n N19 H192 UGJ sing 422 n n # _atom_sites.entry_id 3ZDI _atom_sites.fract_transf_matrix[1][1] 0.013671 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013131 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011555 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 1385 1385 PO4 PO4 . D 4 UGJ A 1 1386 1386 UGJ UGJ . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . E 5 HOH A 41 2041 2041 HOH HOH . E 5 HOH A 42 2042 2042 HOH HOH . E 5 HOH A 43 2043 2043 HOH HOH . E 5 HOH A 44 2044 2044 HOH HOH . E 5 HOH A 45 2045 2045 HOH HOH . E 5 HOH A 46 2046 2046 HOH HOH . E 5 HOH A 47 2047 2047 HOH HOH . E 5 HOH A 48 2048 2048 HOH HOH . E 5 HOH A 49 2049 2049 HOH HOH . E 5 HOH A 50 2050 2050 HOH HOH . E 5 HOH A 51 2051 2051 HOH HOH . E 5 HOH A 52 2052 2052 HOH HOH . E 5 HOH A 53 2053 2053 HOH HOH . E 5 HOH A 54 2054 2054 HOH HOH . E 5 HOH A 55 2055 2055 HOH HOH . E 5 HOH A 56 2056 2056 HOH HOH . E 5 HOH A 57 2057 2057 HOH HOH . E 5 HOH A 58 2058 2058 HOH HOH . E 5 HOH A 59 2059 2059 HOH HOH . E 5 HOH A 60 2060 2060 HOH HOH . E 5 HOH A 61 2061 2061 HOH HOH . E 5 HOH A 62 2062 2062 HOH HOH . E 5 HOH A 63 2063 2063 HOH HOH . E 5 HOH A 64 2064 2064 HOH HOH . E 5 HOH A 65 2065 2065 HOH HOH . E 5 HOH A 66 2066 2066 HOH HOH . E 5 HOH A 67 2067 2067 HOH HOH . E 5 HOH A 68 2068 2068 HOH HOH . E 5 HOH A 69 2069 2069 HOH HOH . E 5 HOH A 70 2070 2070 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 UGJ . . . D 4 -8.988 -7.996 7.149 1 52.01 ? N01 UGJ 1386 A 1 HETATM 2 C C02 UGJ . . . D 4 -9.783 -6.811 7.239 1 50.71 ? C02 UGJ 1386 A 1 HETATM 3 C C03 UGJ . . . D 4 -10.562 -6.277 6.163 1 48.36 ? C03 UGJ 1386 A 1 HETATM 4 S S04 UGJ . . . D 4 -11.332 -4.892 6.678 1 49.65 ? S04 UGJ 1386 A 1 HETATM 5 C C05 UGJ . . . D 4 -10.782 -4.822 8.247 1 50.09 ? C05 UGJ 1386 A 1 HETATM 6 C C06 UGJ . . . D 4 -9.946 -5.918 8.442 1 49.44 ? C06 UGJ 1386 A 1 HETATM 7 C C07 UGJ . . . D 4 -9.348 -6.081 9.718 1 49.01 ? C07 UGJ 1386 A 1 HETATM 8 C C08 UGJ . . . D 4 -8.436 -7.213 10.037 1 48.19 ? C08 UGJ 1386 A 1 HETATM 9 C C09 UGJ . . . D 4 -8.952 -8.409 10.515 1 47.92 ? C09 UGJ 1386 A 1 HETATM 10 C C10 UGJ . . . D 4 -8.098 -9.461 10.814 1 46.32 ? C10 UGJ 1386 A 1 HETATM 11 C C11 UGJ . . . D 4 -6.731 -9.315 10.633 1 44.76 ? C11 UGJ 1386 A 1 HETATM 12 C C12 UGJ . . . D 4 -6.214 -8.119 10.157 1 44.31 ? C12 UGJ 1386 A 1 HETATM 13 C C13 UGJ . . . D 4 -7.067 -7.068 9.856 1 47.08 ? C13 UGJ 1386 A 1 HETATM 14 CL CL UGJ . . . D 4 -6.421 -5.58 9.257 1 58.38 ? CL UGJ 1386 A 1 HETATM 15 C C15 UGJ . . . D 4 -9.627 -5.137 10.715 1 50.96 ? C15 UGJ 1386 A 1 HETATM 16 C C16 UGJ . . . D 4 -9.013 -5.283 12.067 1 50.84 ? C16 UGJ 1386 A 1 HETATM 17 N N17 UGJ . . . D 4 -8.544 -5.393 13.103 1 51.92 ? N17 UGJ 1386 A 1 HETATM 18 C C18 UGJ . . . D 4 -10.479 -4.059 10.445 1 50.92 ? C18 UGJ 1386 A 1 HETATM 19 N N19 UGJ . . . D 4 -10.769 -3.092 11.458 1 52.83 ? N19 UGJ 1386 A 1 HETATM 20 N N20 UGJ . . . D 4 -11.033 -3.927 9.228 1 50.38 ? N20 UGJ 1386 A 1 HETATM 21 C C21 UGJ . . . D 4 -10.667 -6.869 4.799 1 46.14 ? C21 UGJ 1386 A 1 HETATM 22 N N22 UGJ . . . D 4 -10.746 -7.323 3.756 1 46.46 ? N22 UGJ 1386 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #