data_3ZDQ # _model_server_result.job_id C0WfzpFFk5yyrJNLVLUsiQ _model_server_result.datetime_utc '2024-11-13 04:13:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zdq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1723}' # _entry.id 3ZDQ # _exptl.entry_id 3ZDQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ZDQ _cell.length_a 177.79 _cell.length_b 177.79 _cell.length_c 50.06 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZDQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 16.686667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 449 n n C1B O1B LMT sing 450 n n C1B O5B LMT sing 451 n n C1B H1B LMT sing 452 n n C2B C3B LMT sing 453 n n C2B O2B LMT sing 454 n n C2B H2B LMT sing 455 n n C3B C4B LMT sing 456 n n C3B O3B LMT sing 457 n n C3B H3B LMT sing 458 n n C4B C5B LMT sing 459 n n C4B O4' LMT sing 460 n n C4B H4B LMT sing 461 n n C5B C6B LMT sing 462 n n C5B O5B LMT sing 463 n n C5B H5B LMT sing 464 n n C6B O6B LMT sing 465 n n C6B "H6'2" LMT sing 466 n n C6B "H6'1" LMT sing 467 n n O1B C4' LMT sing 468 n n O2B H2O1 LMT sing 469 n n O3B H3O1 LMT sing 470 n n O4' H4O1 LMT sing 471 n n O6B H6B LMT sing 472 n n C1' C2' LMT sing 473 n n C1' O1' LMT sing 474 n n C1' O5' LMT sing 475 n n C1' H1' LMT sing 476 n n C2' C3' LMT sing 477 n n C2' O2' LMT sing 478 n n C2' H2' LMT sing 479 n n C3' C4' LMT sing 480 n n C3' O3' LMT sing 481 n n C3' H3' LMT sing 482 n n C4' C5' LMT sing 483 n n C4' H4' LMT sing 484 n n C5' C6' LMT sing 485 n n C5' O5' LMT sing 486 n n C5' H5' LMT sing 487 n n C6' O6' LMT sing 488 n n C6' H6D LMT sing 489 n n C6' H6E LMT sing 490 n n O1' C1 LMT sing 491 n n O2' H2O2 LMT sing 492 n n O3' H3O2 LMT sing 493 n n O6' H6' LMT sing 494 n n C1 C2 LMT sing 495 n n C1 H12 LMT sing 496 n n C1 H11 LMT sing 497 n n C2 C3 LMT sing 498 n n C2 H22 LMT sing 499 n n C2 H21 LMT sing 500 n n C3 C4 LMT sing 501 n n C3 H32 LMT sing 502 n n C3 H31 LMT sing 503 n n C4 C5 LMT sing 504 n n C4 H42 LMT sing 505 n n C4 H41 LMT sing 506 n n C5 C6 LMT sing 507 n n C5 H52 LMT sing 508 n n C5 H51 LMT sing 509 n n C6 C7 LMT sing 510 n n C6 H62 LMT sing 511 n n C6 H61 LMT sing 512 n n C7 C8 LMT sing 513 n n C7 H72 LMT sing 514 n n C7 H71 LMT sing 515 n n C8 C9 LMT sing 516 n n C8 H82 LMT sing 517 n n C8 H81 LMT sing 518 n n C9 C10 LMT sing 519 n n C9 H92 LMT sing 520 n n C9 H91 LMT sing 521 n n C10 C11 LMT sing 522 n n C10 H102 LMT sing 523 n n C10 H101 LMT sing 524 n n C11 C12 LMT sing 525 n n C11 H112 LMT sing 526 n n C11 H111 LMT sing 527 n n C12 H123 LMT sing 528 n n C12 H122 LMT sing 529 n n C12 H121 LMT sing 530 n n # _atom_sites.entry_id 3ZDQ _atom_sites.fract_transf_matrix[1][1] 0.005625 _atom_sites.fract_transf_matrix[1][2] 0.003247 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006495 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019976 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLY A 1 1717 1717 GLY GLY . C 3 LMT A 1 1720 1720 LMT LMT . D 4 CDL A 1 1721 1721 CDL CDL . E 3 LMT A 1 1723 1723 LMT LMT . F 3 LMT A 1 1724 1724 LMT LMT . G 4 CDL A 1 1728 1728 CDL CDL . H 5 HOH A 1 2001 2001 HOH HOH . H 5 HOH A 2 2002 2002 HOH HOH . H 5 HOH A 3 2003 2003 HOH HOH . H 5 HOH A 4 2004 2004 HOH HOH . H 5 HOH A 5 2005 2005 HOH HOH . H 5 HOH A 6 2006 2006 HOH HOH . H 5 HOH A 7 2007 2007 HOH HOH . H 5 HOH A 8 2008 2008 HOH HOH . H 5 HOH A 9 2009 2009 HOH HOH . H 5 HOH A 10 2010 2010 HOH HOH . H 5 HOH A 11 2011 2011 HOH HOH . H 5 HOH A 12 2012 2012 HOH HOH . H 5 HOH A 13 2013 2013 HOH HOH . H 5 HOH A 14 2014 2014 HOH HOH . H 5 HOH A 15 2015 2015 HOH HOH . H 5 HOH A 16 2016 2016 HOH HOH . H 5 HOH A 17 2017 2017 HOH HOH . H 5 HOH A 18 2018 2018 HOH HOH . H 5 HOH A 19 2019 2019 HOH HOH . H 5 HOH A 20 2020 2020 HOH HOH . H 5 HOH A 21 2021 2021 HOH HOH . H 5 HOH A 22 2022 2022 HOH HOH . H 5 HOH A 23 2023 2023 HOH HOH . H 5 HOH A 24 2024 2024 HOH HOH . H 5 HOH A 25 2025 2025 HOH HOH . H 5 HOH A 26 2026 2026 HOH HOH . H 5 HOH A 27 2027 2027 HOH HOH . H 5 HOH A 28 2028 2028 HOH HOH . H 5 HOH A 29 2029 2029 HOH HOH . H 5 HOH A 30 2030 2030 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMT . . . E 3 -42.837 73.826 -2.351 1 80.36 ? C1 LMT 1723 A 1 HETATM 2 C C2 LMT . . . E 3 -42.879 74.929 -3.379 1 79.4 ? C2 LMT 1723 A 1 HETATM 3 C C3 LMT . . . E 3 -43.639 76.154 -2.907 1 78.67 ? C3 LMT 1723 A 1 HETATM 4 C C4 LMT . . . E 3 -43.708 77.275 -3.924 1 77.98 ? C4 LMT 1723 A 1 HETATM 5 C C5 LMT . . . E 3 -44.805 78.291 -3.647 1 77.9 ? C5 LMT 1723 A 1 HETATM 6 C C6 LMT . . . E 3 -44.971 79.332 -4.75 1 77.23 ? C6 LMT 1723 A 1 HETATM 7 C C7 LMT . . . E 3 -46.259 80.142 -4.661 1 74.9 ? C7 LMT 1723 A 1 HETATM 8 C C8 LMT . . . E 3 -46.216 81.463 -5.409 1 71.01 ? C8 LMT 1723 A 1 HETATM 9 C C9 LMT . . . E 3 -47.55 81.856 -6.005 1 69.32 ? C9 LMT 1723 A 1 HETATM 10 C C10 LMT . . . E 3 -48.354 82.912 -5.232 1 64.33 ? C10 LMT 1723 A 1 HETATM 11 C C11 LMT . . . E 3 -49.756 83.126 -5.8 1 56.56 ? C11 LMT 1723 A 1 HETATM 12 C C12 LMT . . . E 3 -50.469 84.266 -5.17 1 52.75 ? C12 LMT 1723 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #