data_3ZE3 # _model_server_result.job_id qXpRI2J0QGwEfGgYFKW7-A _model_server_result.datetime_utc '2024-11-08 15:03:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ze3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":1122}' # _entry.id 3ZE3 # _exptl.entry_id 3ZE3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ZE3 _cell.length_a 75.06 _cell.length_b 91.54 _cell.length_c 143.65 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZE3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression D,E,F,P,Q,R,S,T,U,V,W,X,BA,CA,DA 1 1 A,B,C,G,H,I,J,K,L,M,N,O,Y,Z,AA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 W N N ? 7 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D OE1 GLU 37 D GLU 28 1_555 P ZN ZN . D ZN 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc2 D OE2 GLU 37 D GLU 28 1_555 P ZN ZN . D ZN 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc3 D OG SER 69 D SER 60 1_555 W NA NA . E NA 1122 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc4 D OE1 GLU 85 D GLU 76 1_555 P ZN ZN . D ZN 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc5 D OD2 ASP 116 D ASP 107 1_555 X NA NA . F NA 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? metalc ? metalc6 P ZN ZN . D ZN 1122 1_555 Q OA2 FLC . D FLC 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc7 P ZN ZN . D ZN 1122 1_555 R OXT ACT . D ACT 1124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc8 BA O HOH . D HOH 2044 1_555 X NA NA . F NA 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.017 ? metalc ? metalc9 E OG1 THR 120 E THR 111 1_555 W NA NA . E NA 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc10 W NA NA . E NA 1122 1_555 CA O HOH . E HOH 2020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc11 F O SER 69 F SER 60 1_555 X NA NA . F NA 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc12 X NA NA . F NA 1122 1_555 DA O HOH . F HOH 2024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3ZE3 _atom_sites.fract_transf_matrix[1][1] 0.013323 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010924 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 78N A 1 1122 1122 78N 78N . H 2 78N A 1 1123 1123 78N 78N . I 2 78N A 1 1124 1124 78N 78N . J 3 78M A 1 1125 1125 78M 78M . K 3 78M A 1 1126 1126 78M 78M . L 2 78N B 1 1122 1122 78N 78N . M 2 78N B 1 1123 1123 78N 78N . N 2 78N C 1 1122 1122 78N 78N . O 2 78N C 1 1123 1123 78N 78N . P 4 ZN D 1 1122 1122 ZN ZN . Q 5 FLC D 1 1123 1123 FLC FLC . R 6 ACT D 1 1124 1124 ACT ACT . S 3 78M D 1 1125 1125 78M 78M . T 3 78M D 1 1126 1126 78M 78M . U 3 78M D 1 1127 1127 78M 78M . V 3 78M D 1 1128 1128 78M 78M . W 7 NA E 1 1122 1122 NA NA . X 7 NA F 1 1122 1122 NA NA . Y 8 HOH A 1 2001 2001 HOH HOH . Y 8 HOH A 2 2002 2002 HOH HOH . Y 8 HOH A 3 2003 2003 HOH HOH . Y 8 HOH A 4 2004 2004 HOH HOH . Y 8 HOH A 5 2005 2005 HOH HOH . Y 8 HOH A 6 2006 2006 HOH HOH . Y 8 HOH A 7 2007 2007 HOH HOH . Y 8 HOH A 8 2008 2008 HOH HOH . Y 8 HOH A 9 2009 2009 HOH HOH . Y 8 HOH A 10 2010 2010 HOH HOH . Y 8 HOH A 11 2011 2011 HOH HOH . Y 8 HOH A 12 2012 2012 HOH HOH . Y 8 HOH A 13 2013 2013 HOH HOH . Y 8 HOH A 14 2014 2014 HOH HOH . Y 8 HOH A 15 2015 2015 HOH HOH . Y 8 HOH A 16 2016 2016 HOH HOH . Y 8 HOH A 17 2017 2017 HOH HOH . Y 8 HOH A 18 2018 2018 HOH HOH . Y 8 HOH A 19 2019 2019 HOH HOH . Y 8 HOH A 20 2020 2020 HOH HOH . Y 8 HOH A 21 2021 2021 HOH HOH . Y 8 HOH A 22 2022 2022 HOH HOH . Y 8 HOH A 23 2023 2023 HOH HOH . Y 8 HOH A 24 2024 2024 HOH HOH . Y 8 HOH A 25 2025 2025 HOH HOH . Y 8 HOH A 26 2026 2026 HOH HOH . Y 8 HOH A 27 2027 2027 HOH HOH . Y 8 HOH A 28 2028 2028 HOH HOH . Y 8 HOH A 29 2029 2029 HOH HOH . Y 8 HOH A 30 2030 2030 HOH HOH . Z 8 HOH B 1 2001 2001 HOH HOH . Z 8 HOH B 2 2002 2002 HOH HOH . Z 8 HOH B 3 2003 2003 HOH HOH . Z 8 HOH B 4 2004 2004 HOH HOH . Z 8 HOH B 5 2005 2005 HOH HOH . Z 8 HOH B 6 2006 2006 HOH HOH . Z 8 HOH B 7 2007 2007 HOH HOH . Z 8 HOH B 8 2008 2008 HOH HOH . Z 8 HOH B 9 2009 2009 HOH HOH . Z 8 HOH B 10 2010 2010 HOH HOH . Z 8 HOH B 11 2011 2011 HOH HOH . Z 8 HOH B 12 2012 2012 HOH HOH . Z 8 HOH B 13 2013 2013 HOH HOH . Z 8 HOH B 14 2014 2014 HOH HOH . Z 8 HOH B 15 2015 2015 HOH HOH . Z 8 HOH B 16 2016 2016 HOH HOH . Z 8 HOH B 17 2017 2017 HOH HOH . Z 8 HOH B 18 2018 2018 HOH HOH . Z 8 HOH B 19 2019 2019 HOH HOH . Z 8 HOH B 20 2020 2020 HOH HOH . Z 8 HOH B 21 2021 2021 HOH HOH . Z 8 HOH B 22 2022 2022 HOH HOH . Z 8 HOH B 23 2023 2023 HOH HOH . Z 8 HOH B 24 2024 2024 HOH HOH . Z 8 HOH B 25 2025 2025 HOH HOH . Z 8 HOH B 26 2026 2026 HOH HOH . Z 8 HOH B 27 2027 2027 HOH HOH . Z 8 HOH B 28 2028 2028 HOH HOH . Z 8 HOH B 29 2029 2029 HOH HOH . Z 8 HOH B 30 2030 2030 HOH HOH . Z 8 HOH B 31 2031 2031 HOH HOH . Z 8 HOH B 32 2032 2032 HOH HOH . Z 8 HOH B 33 2033 2033 HOH HOH . Z 8 HOH B 34 2034 2034 HOH HOH . Z 8 HOH B 35 2035 2035 HOH HOH . Z 8 HOH B 36 2036 2036 HOH HOH . Z 8 HOH B 37 2037 2037 HOH HOH . Z 8 HOH B 38 2038 2038 HOH HOH . Z 8 HOH B 39 2039 2039 HOH HOH . Z 8 HOH B 40 2040 2040 HOH HOH . Z 8 HOH B 41 2041 2041 HOH HOH . Z 8 HOH B 42 2042 2042 HOH HOH . AA 8 HOH C 1 2001 2001 HOH HOH . AA 8 HOH C 2 2002 2002 HOH HOH . AA 8 HOH C 3 2003 2003 HOH HOH . AA 8 HOH C 4 2004 2004 HOH HOH . AA 8 HOH C 5 2005 2005 HOH HOH . AA 8 HOH C 6 2006 2006 HOH HOH . AA 8 HOH C 7 2007 2007 HOH HOH . AA 8 HOH C 8 2008 2008 HOH HOH . AA 8 HOH C 9 2009 2009 HOH HOH . AA 8 HOH C 10 2010 2010 HOH HOH . AA 8 HOH C 11 2011 2011 HOH HOH . AA 8 HOH C 12 2012 2012 HOH HOH . AA 8 HOH C 13 2013 2013 HOH HOH . AA 8 HOH C 14 2014 2014 HOH HOH . AA 8 HOH C 15 2015 2015 HOH HOH . AA 8 HOH C 16 2016 2016 HOH HOH . AA 8 HOH C 17 2017 2017 HOH HOH . AA 8 HOH C 18 2018 2018 HOH HOH . AA 8 HOH C 19 2019 2019 HOH HOH . BA 8 HOH D 1 2001 2001 HOH HOH . BA 8 HOH D 2 2002 2002 HOH HOH . BA 8 HOH D 3 2003 2003 HOH HOH . BA 8 HOH D 4 2004 2004 HOH HOH . BA 8 HOH D 5 2005 2005 HOH HOH . BA 8 HOH D 6 2006 2006 HOH HOH . BA 8 HOH D 7 2007 2007 HOH HOH . BA 8 HOH D 8 2008 2008 HOH HOH . BA 8 HOH D 9 2009 2009 HOH HOH . BA 8 HOH D 10 2010 2010 HOH HOH . BA 8 HOH D 11 2011 2011 HOH HOH . BA 8 HOH D 12 2012 2012 HOH HOH . BA 8 HOH D 13 2013 2013 HOH HOH . BA 8 HOH D 14 2014 2014 HOH HOH . BA 8 HOH D 15 2015 2015 HOH HOH . BA 8 HOH D 16 2016 2016 HOH HOH . BA 8 HOH D 17 2017 2017 HOH HOH . BA 8 HOH D 18 2018 2018 HOH HOH . BA 8 HOH D 19 2019 2019 HOH HOH . BA 8 HOH D 20 2020 2020 HOH HOH . BA 8 HOH D 21 2021 2021 HOH HOH . BA 8 HOH D 22 2022 2022 HOH HOH . BA 8 HOH D 23 2023 2023 HOH HOH . BA 8 HOH D 24 2024 2024 HOH HOH . BA 8 HOH D 25 2025 2025 HOH HOH . BA 8 HOH D 26 2026 2026 HOH HOH . BA 8 HOH D 27 2027 2027 HOH HOH . BA 8 HOH D 28 2028 2028 HOH HOH . BA 8 HOH D 29 2029 2029 HOH HOH . BA 8 HOH D 30 2030 2030 HOH HOH . BA 8 HOH D 31 2031 2031 HOH HOH . BA 8 HOH D 32 2032 2032 HOH HOH . BA 8 HOH D 33 2033 2033 HOH HOH . BA 8 HOH D 34 2034 2034 HOH HOH . BA 8 HOH D 35 2035 2035 HOH HOH . BA 8 HOH D 36 2036 2036 HOH HOH . BA 8 HOH D 37 2037 2037 HOH HOH . BA 8 HOH D 38 2038 2038 HOH HOH . BA 8 HOH D 39 2039 2039 HOH HOH . BA 8 HOH D 40 2040 2040 HOH HOH . BA 8 HOH D 41 2041 2041 HOH HOH . BA 8 HOH D 42 2042 2042 HOH HOH . BA 8 HOH D 43 2043 2043 HOH HOH . BA 8 HOH D 44 2044 2044 HOH HOH . BA 8 HOH D 45 2045 2045 HOH HOH . BA 8 HOH D 46 2046 2046 HOH HOH . BA 8 HOH D 47 2047 2047 HOH HOH . BA 8 HOH D 48 2048 2048 HOH HOH . BA 8 HOH D 49 2049 2049 HOH HOH . BA 8 HOH D 50 2050 2050 HOH HOH . BA 8 HOH D 51 2051 2051 HOH HOH . CA 8 HOH E 1 2001 2001 HOH HOH . CA 8 HOH E 2 2002 2002 HOH HOH . CA 8 HOH E 3 2003 2003 HOH HOH . CA 8 HOH E 4 2004 2004 HOH HOH . CA 8 HOH E 5 2005 2005 HOH HOH . CA 8 HOH E 6 2006 2006 HOH HOH . CA 8 HOH E 7 2007 2007 HOH HOH . CA 8 HOH E 8 2008 2008 HOH HOH . CA 8 HOH E 9 2009 2009 HOH HOH . CA 8 HOH E 10 2010 2010 HOH HOH . CA 8 HOH E 11 2011 2011 HOH HOH . CA 8 HOH E 12 2012 2012 HOH HOH . CA 8 HOH E 13 2013 2013 HOH HOH . CA 8 HOH E 14 2014 2014 HOH HOH . CA 8 HOH E 15 2015 2015 HOH HOH . CA 8 HOH E 16 2016 2016 HOH HOH . CA 8 HOH E 17 2017 2017 HOH HOH . CA 8 HOH E 18 2018 2018 HOH HOH . CA 8 HOH E 19 2019 2019 HOH HOH . CA 8 HOH E 20 2020 2020 HOH HOH . CA 8 HOH E 21 2021 2021 HOH HOH . DA 8 HOH F 1 2001 2001 HOH HOH . DA 8 HOH F 2 2002 2002 HOH HOH . DA 8 HOH F 3 2003 2003 HOH HOH . DA 8 HOH F 4 2004 2004 HOH HOH . DA 8 HOH F 5 2005 2005 HOH HOH . DA 8 HOH F 6 2006 2006 HOH HOH . DA 8 HOH F 7 2007 2007 HOH HOH . DA 8 HOH F 8 2008 2008 HOH HOH . DA 8 HOH F 9 2009 2009 HOH HOH . DA 8 HOH F 10 2010 2010 HOH HOH . DA 8 HOH F 11 2011 2011 HOH HOH . DA 8 HOH F 12 2012 2012 HOH HOH . DA 8 HOH F 13 2013 2013 HOH HOH . DA 8 HOH F 14 2014 2014 HOH HOH . DA 8 HOH F 15 2015 2015 HOH HOH . DA 8 HOH F 16 2016 2016 HOH HOH . DA 8 HOH F 17 2017 2017 HOH HOH . DA 8 HOH F 18 2018 2018 HOH HOH . DA 8 HOH F 19 2019 2019 HOH HOH . DA 8 HOH F 20 2020 2020 HOH HOH . DA 8 HOH F 21 2021 2021 HOH HOH . DA 8 HOH F 22 2022 2022 HOH HOH . DA 8 HOH F 23 2023 2023 HOH HOH . DA 8 HOH F 24 2024 2024 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id W _atom_site.label_entity_id 7 _atom_site.Cartn_x 76.766 _atom_site.Cartn_y 40.833 _atom_site.Cartn_z 70.965 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 56.77 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1122 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #