data_3ZE3
#
_model_server_result.job_id            YEdyIMYGXObQv3_U0nEh4Q 
_model_server_result.datetime_utc      '2024-11-27 18:13:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ze3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":1122}' 
#
_entry.id    3ZE3 
#
_exptl.entry_id    3ZE3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3ZE3 
_cell.length_a            75.06 
_cell.length_b            91.54 
_cell.length_c            143.65 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ZE3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
D,E,F,P,Q,R,S,T,U,V,W,X,BA,CA,DA 1 1 
A,B,C,G,H,I,J,K,L,M,N,O,Y,Z,AA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 W N N 
? 7 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D OE1 GLU 37 D GLU 28 1_555 P ZN ZN . D ZN 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc2 D OE2 GLU 37 D GLU 28 1_555 P ZN ZN . D ZN 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc3 D OG SER 69 D SER 60 1_555 W NA NA . E NA 1122 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.568 ? 
metalc ? metalc4 D OE1 GLU 85 D GLU 76 1_555 P ZN ZN . D ZN 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc5 D OD2 ASP 116 D ASP 107 1_555 X NA NA . F NA 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? 
metalc ? metalc6 P ZN ZN . D ZN 1122 1_555 Q OA2 FLC . D FLC 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc7 P ZN ZN . D ZN 1122 1_555 R OXT ACT . D ACT 1124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc8 BA O HOH . D HOH 2044 1_555 X NA NA . F NA 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.017 ? 
metalc ? metalc9 E OG1 THR 120 E THR 111 1_555 W NA NA . E NA 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc10 W NA NA . E NA 1122 1_555 CA O HOH . E HOH 2020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? 
metalc ? metalc11 F O SER 69 F SER 60 1_555 X NA NA . F NA 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? 
metalc ? metalc12 X NA NA . F NA 1122 1_555 DA O HOH . F HOH 2024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3ZE3 
_atom_sites.fract_transf_matrix[1][1]    0.013323 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010924 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006961 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 78N A 1 1122 1122 78N 78N . 
H 2 78N A 1 1123 1123 78N 78N . 
I 2 78N A 1 1124 1124 78N 78N . 
J 3 78M A 1 1125 1125 78M 78M . 
K 3 78M A 1 1126 1126 78M 78M . 
L 2 78N B 1 1122 1122 78N 78N . 
M 2 78N B 1 1123 1123 78N 78N . 
N 2 78N C 1 1122 1122 78N 78N . 
O 2 78N C 1 1123 1123 78N 78N . 
P 4 ZN D 1 1122 1122 ZN ZN . 
Q 5 FLC D 1 1123 1123 FLC FLC . 
R 6 ACT D 1 1124 1124 ACT ACT . 
S 3 78M D 1 1125 1125 78M 78M . 
T 3 78M D 1 1126 1126 78M 78M . 
U 3 78M D 1 1127 1127 78M 78M . 
V 3 78M D 1 1128 1128 78M 78M . 
W 7 NA E 1 1122 1122 NA NA . 
X 7 NA F 1 1122 1122 NA NA . 
Y 8 HOH A 1 2001 2001 HOH HOH . 
Y 8 HOH A 2 2002 2002 HOH HOH . 
Y 8 HOH A 3 2003 2003 HOH HOH . 
Y 8 HOH A 4 2004 2004 HOH HOH . 
Y 8 HOH A 5 2005 2005 HOH HOH . 
Y 8 HOH A 6 2006 2006 HOH HOH . 
Y 8 HOH A 7 2007 2007 HOH HOH . 
Y 8 HOH A 8 2008 2008 HOH HOH . 
Y 8 HOH A 9 2009 2009 HOH HOH . 
Y 8 HOH A 10 2010 2010 HOH HOH . 
Y 8 HOH A 11 2011 2011 HOH HOH . 
Y 8 HOH A 12 2012 2012 HOH HOH . 
Y 8 HOH A 13 2013 2013 HOH HOH . 
Y 8 HOH A 14 2014 2014 HOH HOH . 
Y 8 HOH A 15 2015 2015 HOH HOH . 
Y 8 HOH A 16 2016 2016 HOH HOH . 
Y 8 HOH A 17 2017 2017 HOH HOH . 
Y 8 HOH A 18 2018 2018 HOH HOH . 
Y 8 HOH A 19 2019 2019 HOH HOH . 
Y 8 HOH A 20 2020 2020 HOH HOH . 
Y 8 HOH A 21 2021 2021 HOH HOH . 
Y 8 HOH A 22 2022 2022 HOH HOH . 
Y 8 HOH A 23 2023 2023 HOH HOH . 
Y 8 HOH A 24 2024 2024 HOH HOH . 
Y 8 HOH A 25 2025 2025 HOH HOH . 
Y 8 HOH A 26 2026 2026 HOH HOH . 
Y 8 HOH A 27 2027 2027 HOH HOH . 
Y 8 HOH A 28 2028 2028 HOH HOH . 
Y 8 HOH A 29 2029 2029 HOH HOH . 
Y 8 HOH A 30 2030 2030 HOH HOH . 
Z 8 HOH B 1 2001 2001 HOH HOH . 
Z 8 HOH B 2 2002 2002 HOH HOH . 
Z 8 HOH B 3 2003 2003 HOH HOH . 
Z 8 HOH B 4 2004 2004 HOH HOH . 
Z 8 HOH B 5 2005 2005 HOH HOH . 
Z 8 HOH B 6 2006 2006 HOH HOH . 
Z 8 HOH B 7 2007 2007 HOH HOH . 
Z 8 HOH B 8 2008 2008 HOH HOH . 
Z 8 HOH B 9 2009 2009 HOH HOH . 
Z 8 HOH B 10 2010 2010 HOH HOH . 
Z 8 HOH B 11 2011 2011 HOH HOH . 
Z 8 HOH B 12 2012 2012 HOH HOH . 
Z 8 HOH B 13 2013 2013 HOH HOH . 
Z 8 HOH B 14 2014 2014 HOH HOH . 
Z 8 HOH B 15 2015 2015 HOH HOH . 
Z 8 HOH B 16 2016 2016 HOH HOH . 
Z 8 HOH B 17 2017 2017 HOH HOH . 
Z 8 HOH B 18 2018 2018 HOH HOH . 
Z 8 HOH B 19 2019 2019 HOH HOH . 
Z 8 HOH B 20 2020 2020 HOH HOH . 
Z 8 HOH B 21 2021 2021 HOH HOH . 
Z 8 HOH B 22 2022 2022 HOH HOH . 
Z 8 HOH B 23 2023 2023 HOH HOH . 
Z 8 HOH B 24 2024 2024 HOH HOH . 
Z 8 HOH B 25 2025 2025 HOH HOH . 
Z 8 HOH B 26 2026 2026 HOH HOH . 
Z 8 HOH B 27 2027 2027 HOH HOH . 
Z 8 HOH B 28 2028 2028 HOH HOH . 
Z 8 HOH B 29 2029 2029 HOH HOH . 
Z 8 HOH B 30 2030 2030 HOH HOH . 
Z 8 HOH B 31 2031 2031 HOH HOH . 
Z 8 HOH B 32 2032 2032 HOH HOH . 
Z 8 HOH B 33 2033 2033 HOH HOH . 
Z 8 HOH B 34 2034 2034 HOH HOH . 
Z 8 HOH B 35 2035 2035 HOH HOH . 
Z 8 HOH B 36 2036 2036 HOH HOH . 
Z 8 HOH B 37 2037 2037 HOH HOH . 
Z 8 HOH B 38 2038 2038 HOH HOH . 
Z 8 HOH B 39 2039 2039 HOH HOH . 
Z 8 HOH B 40 2040 2040 HOH HOH . 
Z 8 HOH B 41 2041 2041 HOH HOH . 
Z 8 HOH B 42 2042 2042 HOH HOH . 
AA 8 HOH C 1 2001 2001 HOH HOH . 
AA 8 HOH C 2 2002 2002 HOH HOH . 
AA 8 HOH C 3 2003 2003 HOH HOH . 
AA 8 HOH C 4 2004 2004 HOH HOH . 
AA 8 HOH C 5 2005 2005 HOH HOH . 
AA 8 HOH C 6 2006 2006 HOH HOH . 
AA 8 HOH C 7 2007 2007 HOH HOH . 
AA 8 HOH C 8 2008 2008 HOH HOH . 
AA 8 HOH C 9 2009 2009 HOH HOH . 
AA 8 HOH C 10 2010 2010 HOH HOH . 
AA 8 HOH C 11 2011 2011 HOH HOH . 
AA 8 HOH C 12 2012 2012 HOH HOH . 
AA 8 HOH C 13 2013 2013 HOH HOH . 
AA 8 HOH C 14 2014 2014 HOH HOH . 
AA 8 HOH C 15 2015 2015 HOH HOH . 
AA 8 HOH C 16 2016 2016 HOH HOH . 
AA 8 HOH C 17 2017 2017 HOH HOH . 
AA 8 HOH C 18 2018 2018 HOH HOH . 
AA 8 HOH C 19 2019 2019 HOH HOH . 
BA 8 HOH D 1 2001 2001 HOH HOH . 
BA 8 HOH D 2 2002 2002 HOH HOH . 
BA 8 HOH D 3 2003 2003 HOH HOH . 
BA 8 HOH D 4 2004 2004 HOH HOH . 
BA 8 HOH D 5 2005 2005 HOH HOH . 
BA 8 HOH D 6 2006 2006 HOH HOH . 
BA 8 HOH D 7 2007 2007 HOH HOH . 
BA 8 HOH D 8 2008 2008 HOH HOH . 
BA 8 HOH D 9 2009 2009 HOH HOH . 
BA 8 HOH D 10 2010 2010 HOH HOH . 
BA 8 HOH D 11 2011 2011 HOH HOH . 
BA 8 HOH D 12 2012 2012 HOH HOH . 
BA 8 HOH D 13 2013 2013 HOH HOH . 
BA 8 HOH D 14 2014 2014 HOH HOH . 
BA 8 HOH D 15 2015 2015 HOH HOH . 
BA 8 HOH D 16 2016 2016 HOH HOH . 
BA 8 HOH D 17 2017 2017 HOH HOH . 
BA 8 HOH D 18 2018 2018 HOH HOH . 
BA 8 HOH D 19 2019 2019 HOH HOH . 
BA 8 HOH D 20 2020 2020 HOH HOH . 
BA 8 HOH D 21 2021 2021 HOH HOH . 
BA 8 HOH D 22 2022 2022 HOH HOH . 
BA 8 HOH D 23 2023 2023 HOH HOH . 
BA 8 HOH D 24 2024 2024 HOH HOH . 
BA 8 HOH D 25 2025 2025 HOH HOH . 
BA 8 HOH D 26 2026 2026 HOH HOH . 
BA 8 HOH D 27 2027 2027 HOH HOH . 
BA 8 HOH D 28 2028 2028 HOH HOH . 
BA 8 HOH D 29 2029 2029 HOH HOH . 
BA 8 HOH D 30 2030 2030 HOH HOH . 
BA 8 HOH D 31 2031 2031 HOH HOH . 
BA 8 HOH D 32 2032 2032 HOH HOH . 
BA 8 HOH D 33 2033 2033 HOH HOH . 
BA 8 HOH D 34 2034 2034 HOH HOH . 
BA 8 HOH D 35 2035 2035 HOH HOH . 
BA 8 HOH D 36 2036 2036 HOH HOH . 
BA 8 HOH D 37 2037 2037 HOH HOH . 
BA 8 HOH D 38 2038 2038 HOH HOH . 
BA 8 HOH D 39 2039 2039 HOH HOH . 
BA 8 HOH D 40 2040 2040 HOH HOH . 
BA 8 HOH D 41 2041 2041 HOH HOH . 
BA 8 HOH D 42 2042 2042 HOH HOH . 
BA 8 HOH D 43 2043 2043 HOH HOH . 
BA 8 HOH D 44 2044 2044 HOH HOH . 
BA 8 HOH D 45 2045 2045 HOH HOH . 
BA 8 HOH D 46 2046 2046 HOH HOH . 
BA 8 HOH D 47 2047 2047 HOH HOH . 
BA 8 HOH D 48 2048 2048 HOH HOH . 
BA 8 HOH D 49 2049 2049 HOH HOH . 
BA 8 HOH D 50 2050 2050 HOH HOH . 
BA 8 HOH D 51 2051 2051 HOH HOH . 
CA 8 HOH E 1 2001 2001 HOH HOH . 
CA 8 HOH E 2 2002 2002 HOH HOH . 
CA 8 HOH E 3 2003 2003 HOH HOH . 
CA 8 HOH E 4 2004 2004 HOH HOH . 
CA 8 HOH E 5 2005 2005 HOH HOH . 
CA 8 HOH E 6 2006 2006 HOH HOH . 
CA 8 HOH E 7 2007 2007 HOH HOH . 
CA 8 HOH E 8 2008 2008 HOH HOH . 
CA 8 HOH E 9 2009 2009 HOH HOH . 
CA 8 HOH E 10 2010 2010 HOH HOH . 
CA 8 HOH E 11 2011 2011 HOH HOH . 
CA 8 HOH E 12 2012 2012 HOH HOH . 
CA 8 HOH E 13 2013 2013 HOH HOH . 
CA 8 HOH E 14 2014 2014 HOH HOH . 
CA 8 HOH E 15 2015 2015 HOH HOH . 
CA 8 HOH E 16 2016 2016 HOH HOH . 
CA 8 HOH E 17 2017 2017 HOH HOH . 
CA 8 HOH E 18 2018 2018 HOH HOH . 
CA 8 HOH E 19 2019 2019 HOH HOH . 
CA 8 HOH E 20 2020 2020 HOH HOH . 
CA 8 HOH E 21 2021 2021 HOH HOH . 
DA 8 HOH F 1 2001 2001 HOH HOH . 
DA 8 HOH F 2 2002 2002 HOH HOH . 
DA 8 HOH F 3 2003 2003 HOH HOH . 
DA 8 HOH F 4 2004 2004 HOH HOH . 
DA 8 HOH F 5 2005 2005 HOH HOH . 
DA 8 HOH F 6 2006 2006 HOH HOH . 
DA 8 HOH F 7 2007 2007 HOH HOH . 
DA 8 HOH F 8 2008 2008 HOH HOH . 
DA 8 HOH F 9 2009 2009 HOH HOH . 
DA 8 HOH F 10 2010 2010 HOH HOH . 
DA 8 HOH F 11 2011 2011 HOH HOH . 
DA 8 HOH F 12 2012 2012 HOH HOH . 
DA 8 HOH F 13 2013 2013 HOH HOH . 
DA 8 HOH F 14 2014 2014 HOH HOH . 
DA 8 HOH F 15 2015 2015 HOH HOH . 
DA 8 HOH F 16 2016 2016 HOH HOH . 
DA 8 HOH F 17 2017 2017 HOH HOH . 
DA 8 HOH F 18 2018 2018 HOH HOH . 
DA 8 HOH F 19 2019 2019 HOH HOH . 
DA 8 HOH F 20 2020 2020 HOH HOH . 
DA 8 HOH F 21 2021 2021 HOH HOH . 
DA 8 HOH F 22 2022 2022 HOH HOH . 
DA 8 HOH F 23 2023 2023 HOH HOH . 
DA 8 HOH F 24 2024 2024 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         X 
_atom_site.label_entity_id       7 
_atom_site.Cartn_x               68.541 
_atom_site.Cartn_y               36.973 
_atom_site.Cartn_z               67.236 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        53.9 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1122 
_atom_site.auth_asym_id          F 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#