data_3ZEI # _model_server_result.job_id tiw2kRGaqfRauurRDhm2qw _model_server_result.datetime_utc '2024-10-10 19:25:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zei # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1302}' # _entry.id 3ZEI # _exptl.entry_id 3ZEI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 412.416 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[(Z)-[(5Z)-5-[[2-(2-hydroxy-2-oxoethyloxy)phenyl]methylidene]-3-methyl-4-oxidanylidene-1,3-thiazolidin-2-ylidene]amino]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ZEI _cell.length_a 71.82 _cell.length_b 71.82 _cell.length_c 179.63 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZEI _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 44 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 44 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 1301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.577 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H16 N2 O6 S' _chem_comp.formula_weight 412.416 _chem_comp.id AWH _chem_comp.mon_nstd_flag . _chem_comp.name '3-[(Z)-[(5Z)-5-[[2-(2-hydroxy-2-oxoethyloxy)phenyl]methylidene]-3-methyl-4-oxidanylidene-1,3-thiazolidin-2-ylidene]amino]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3-((Z)-((Z)-5-(2(carboxymethoxy)benzylidene)-3-methyl-4-oxothiazolidin-2-ylidene)amino)benzoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C19 AWH doub 70 n n C19 O6 AWH sing 71 n n C19 C18 AWH sing 72 n n C18 C17 AWH sing 73 n y C18 C20 AWH doub 74 n y C17 C16 AWH doub 75 n y C16 C15 AWH sing 76 n y C15 C14 AWH doub 77 n y C20 C14 AWH sing 78 n y C14 N2 AWH sing 79 n n N2 C13 AWH doub 80 n n C13 N1 AWH sing 81 n n C13 S AWH sing 82 n n N1 C1 AWH sing 83 n n N1 C2 AWH sing 84 n n S C3 AWH sing 85 n n C3 C2 AWH sing 86 n n C3 C4 AWH doub 87 z n C2 O1 AWH doub 88 n n C4 C5 AWH sing 89 n n C5 C10 AWH sing 90 n y C5 C6 AWH doub 91 n y C10 O2 AWH sing 92 n n C10 C9 AWH doub 93 n y O2 C11 AWH sing 94 n n C11 C12 AWH sing 95 n n C12 O4 AWH sing 96 n n C12 O3 AWH doub 97 n n C9 C8 AWH sing 98 n y C8 C7 AWH doub 99 n y C7 C6 AWH sing 100 n y O6 H6 AWH sing 101 n n C17 H17 AWH sing 102 n n C20 H20 AWH sing 103 n n C16 H16 AWH sing 104 n n C15 H15 AWH sing 105 n n C1 H11C AWH sing 106 n n C1 H12C AWH sing 107 n n C1 H13C AWH sing 108 n n C4 H4C AWH sing 109 n n C6 HA AWH sing 110 n n C9 H9 AWH sing 111 n n C11 H111 AWH sing 112 n n C11 H112 AWH sing 113 n n O4 H4 AWH sing 114 n n C8 H8 AWH sing 115 n n C7 H7 AWH sing 116 n n # _atom_sites.entry_id 3ZEI _atom_sites.fract_transf_matrix[1][1] 0.013924 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013924 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005567 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 1301 1301 PLP PLP . C 3 AWH A 1 1302 1302 AWH AWH . D 4 MPD A 1 1303 1303 MPD MPD . E 4 MPD A 1 1304 1304 MPD MPD . F 5 HOH A 1 2001 2001 HOH HOH . F 5 HOH A 2 2002 2002 HOH HOH . F 5 HOH A 3 2003 2003 HOH HOH . F 5 HOH A 4 2004 2004 HOH HOH . F 5 HOH A 5 2005 2005 HOH HOH . F 5 HOH A 6 2006 2006 HOH HOH . F 5 HOH A 7 2007 2007 HOH HOH . F 5 HOH A 8 2008 2008 HOH HOH . F 5 HOH A 9 2009 2009 HOH HOH . F 5 HOH A 10 2010 2010 HOH HOH . F 5 HOH A 11 2011 2011 HOH HOH . F 5 HOH A 12 2012 2012 HOH HOH . F 5 HOH A 13 2013 2013 HOH HOH . F 5 HOH A 14 2014 2014 HOH HOH . F 5 HOH A 15 2015 2015 HOH HOH . F 5 HOH A 16 2016 2016 HOH HOH . F 5 HOH A 17 2017 2017 HOH HOH . F 5 HOH A 18 2018 2018 HOH HOH . F 5 HOH A 19 2019 2019 HOH HOH . F 5 HOH A 20 2020 2020 HOH HOH . F 5 HOH A 21 2021 2021 HOH HOH . F 5 HOH A 22 2022 2022 HOH HOH . F 5 HOH A 23 2023 2023 HOH HOH . F 5 HOH A 24 2024 2024 HOH HOH . F 5 HOH A 25 2025 2025 HOH HOH . F 5 HOH A 26 2026 2026 HOH HOH . F 5 HOH A 27 2027 2027 HOH HOH . F 5 HOH A 28 2028 2028 HOH HOH . F 5 HOH A 29 2029 2029 HOH HOH . F 5 HOH A 30 2030 2030 HOH HOH . F 5 HOH A 31 2031 2031 HOH HOH . F 5 HOH A 32 2032 2032 HOH HOH . F 5 HOH A 33 2033 2033 HOH HOH . F 5 HOH A 34 2034 2034 HOH HOH . F 5 HOH A 35 2035 2035 HOH HOH . F 5 HOH A 36 2036 2036 HOH HOH . F 5 HOH A 37 2037 2037 HOH HOH . F 5 HOH A 38 2038 2038 HOH HOH . F 5 HOH A 39 2039 2039 HOH HOH . F 5 HOH A 40 2040 2040 HOH HOH . F 5 HOH A 41 2041 2041 HOH HOH . F 5 HOH A 42 2042 2042 HOH HOH . F 5 HOH A 43 2043 2043 HOH HOH . F 5 HOH A 44 2044 2044 HOH HOH . F 5 HOH A 45 2045 2045 HOH HOH . F 5 HOH A 46 2046 2046 HOH HOH . F 5 HOH A 47 2047 2047 HOH HOH . F 5 HOH A 48 2048 2048 HOH HOH . F 5 HOH A 49 2049 2049 HOH HOH . F 5 HOH A 50 2050 2050 HOH HOH . F 5 HOH A 51 2051 2051 HOH HOH . F 5 HOH A 52 2052 2052 HOH HOH . F 5 HOH A 53 2053 2053 HOH HOH . F 5 HOH A 54 2054 2054 HOH HOH . F 5 HOH A 55 2055 2055 HOH HOH . F 5 HOH A 56 2056 2056 HOH HOH . F 5 HOH A 57 2057 2057 HOH HOH . F 5 HOH A 58 2058 2058 HOH HOH . F 5 HOH A 59 2059 2059 HOH HOH . F 5 HOH A 60 2060 2060 HOH HOH . F 5 HOH A 61 2061 2061 HOH HOH . F 5 HOH A 62 2062 2062 HOH HOH . F 5 HOH A 63 2063 2063 HOH HOH . F 5 HOH A 64 2064 2064 HOH HOH . F 5 HOH A 65 2065 2065 HOH HOH . F 5 HOH A 66 2066 2066 HOH HOH . F 5 HOH A 67 2067 2067 HOH HOH . F 5 HOH A 68 2068 2068 HOH HOH . F 5 HOH A 69 2069 2069 HOH HOH . F 5 HOH A 70 2070 2070 HOH HOH . F 5 HOH A 71 2071 2071 HOH HOH . F 5 HOH A 72 2072 2072 HOH HOH . F 5 HOH A 73 2073 2073 HOH HOH . F 5 HOH A 74 2074 2074 HOH HOH . F 5 HOH A 75 2075 2075 HOH HOH . F 5 HOH A 76 2076 2076 HOH HOH . F 5 HOH A 77 2077 2077 HOH HOH . F 5 HOH A 78 2078 2078 HOH HOH . F 5 HOH A 79 2079 2079 HOH HOH . F 5 HOH A 80 2080 2080 HOH HOH . F 5 HOH A 81 2081 2081 HOH HOH . F 5 HOH A 82 2082 2082 HOH HOH . F 5 HOH A 83 2083 2083 HOH HOH . F 5 HOH A 84 2084 2084 HOH HOH . F 5 HOH A 85 2085 2085 HOH HOH . F 5 HOH A 86 2086 2086 HOH HOH . F 5 HOH A 87 2087 2087 HOH HOH . F 5 HOH A 88 2088 2088 HOH HOH . F 5 HOH A 89 2089 2089 HOH HOH . F 5 HOH A 90 2090 2090 HOH HOH . F 5 HOH A 91 2091 2091 HOH HOH . F 5 HOH A 92 2092 2092 HOH HOH . F 5 HOH A 93 2093 2093 HOH HOH . F 5 HOH A 94 2094 2094 HOH HOH . F 5 HOH A 95 2095 2095 HOH HOH . F 5 HOH A 96 2096 2096 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 AWH . . . C 3 -18.62 4.29 -6.693 1 36.83 ? O5 AWH 1302 A 1 HETATM 2 C C19 AWH . . . C 3 -18.691 5.4 -6.152 1 42.88 ? C19 AWH 1302 A 1 HETATM 3 O O6 AWH . . . C 3 -17.882 6.382 -6.588 1 39.86 ? O6 AWH 1302 A 1 HETATM 4 C C18 AWH . . . C 3 -19.568 5.696 -4.935 1 41.14 ? C18 AWH 1302 A 1 HETATM 5 C C17 AWH . . . C 3 -20.486 4.802 -4.356 1 41.37 ? C17 AWH 1302 A 1 HETATM 6 C C16 AWH . . . C 3 -21.223 5.17 -3.219 1 45.7 ? C16 AWH 1302 A 1 HETATM 7 C C15 AWH . . . C 3 -21.02 6.433 -2.624 1 47.13 ? C15 AWH 1302 A 1 HETATM 8 C C20 AWH . . . C 3 -19.373 6.931 -4.341 1 42.55 ? C20 AWH 1302 A 1 HETATM 9 C C14 AWH . . . C 3 -20.086 7.307 -3.205 1 47.85 ? C14 AWH 1302 A 1 HETATM 10 N N2 AWH . . . C 3 -19.82 8.543 -2.728 1 51.26 ? N2 AWH 1302 A 1 HETATM 11 C C13 AWH . . . C 3 -20.14 9.682 -3.402 1 57.81 ? C13 AWH 1302 A 1 HETATM 12 N N1 AWH . . . C 3 -19.836 10.898 -2.898 1 58.42 ? N1 AWH 1302 A 1 HETATM 13 C C1 AWH . . . C 3 -19.117 11.159 -1.616 1 55.5 ? C1 AWH 1302 A 1 HETATM 14 S S AWH . . . C 3 -20.949 9.72 -4.897 1 54.92 ? S AWH 1302 A 1 HETATM 15 C C3 AWH . . . C 3 -20.956 11.396 -4.93 1 59.13 ? C3 AWH 1302 A 1 HETATM 16 C C2 AWH . . . C 3 -20.296 11.826 -3.782 1 57.88 ? C2 AWH 1302 A 1 HETATM 17 O O1 AWH . . . C 3 -20.149 13.074 -3.56 1 58.72 ? O1 AWH 1302 A 1 HETATM 18 C C4 AWH . . . C 3 -21.54 12.19 -6.05 1 59.28 ? C4 AWH 1302 A 1 HETATM 19 C C5 AWH . . . C 3 -22.251 11.639 -7.242 1 61.88 ? C5 AWH 1302 A 1 HETATM 20 C C10 AWH . . . C 3 -23.33 12.388 -7.727 1 68.24 ? C10 AWH 1302 A 1 HETATM 21 O O2 AWH . . . C 3 -23.633 13.557 -7.063 1 75.94 ? O2 AWH 1302 A 1 HETATM 22 C C11 AWH . . . C 3 -24.002 14.779 -7.696 1 80.1 ? C11 AWH 1302 A 1 HETATM 23 C C12 AWH . . . C 3 -25.238 15.273 -6.977 1 77.78 ? C12 AWH 1302 A 1 HETATM 24 O O4 AWH . . . C 3 -26.457 15.052 -7.463 1 74.1 ? O4 AWH 1302 A 1 HETATM 25 O O3 AWH . . . C 3 -25.129 15.875 -5.924 1 81 ? O3 AWH 1302 A 1 HETATM 26 C C9 AWH . . . C 3 -24.08 11.945 -8.834 1 64.7 ? C9 AWH 1302 A 1 HETATM 27 C C8 AWH . . . C 3 -23.74 10.745 -9.471 1 59.74 ? C8 AWH 1302 A 1 HETATM 28 C C7 AWH . . . C 3 -22.656 9.995 -8.986 1 60.6 ? C7 AWH 1302 A 1 HETATM 29 C C6 AWH . . . C 3 -21.917 10.432 -7.875 1 59.46 ? C6 AWH 1302 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 29 #