data_3ZG2
#
_model_server_result.job_id            WaIOtyduovttLNkXi5GOvw 
_model_server_result.datetime_utc      '2024-12-01 08:58:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3zg2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1480}' 
#
_entry.id    3ZG2 
#
_exptl.entry_id    3ZG2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3ZG2 
_cell.length_a            63.699 
_cell.length_b            63.699 
_cell.length_c            223.263 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ZG2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 395 A CYS 422 1_555 B FE HEM . A HEM 1480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc2 B FE HEM . A HEM 1480 1_555 C NAV UDO . A UDO 1490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     3ZG2 
_atom_sites.fract_transf_matrix[1][1]    0.015699 
_atom_sites.fract_transf_matrix[1][2]    0.009064 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018127 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004479 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 1480 1480 HEM HEM . 
C 3 UDO A 1 1490 1490 UDO UDO . 
D 4 HOH A 1 2001 2001 HOH HOH . 
D 4 HOH A 2 2002 2002 HOH HOH . 
D 4 HOH A 3 2003 2003 HOH HOH . 
D 4 HOH A 4 2004 2004 HOH HOH . 
D 4 HOH A 5 2005 2005 HOH HOH . 
D 4 HOH A 6 2006 2006 HOH HOH . 
D 4 HOH A 7 2007 2007 HOH HOH . 
D 4 HOH A 8 2008 2008 HOH HOH . 
D 4 HOH A 9 2009 2009 HOH HOH . 
D 4 HOH A 10 2010 2010 HOH HOH . 
D 4 HOH A 11 2011 2011 HOH HOH . 
D 4 HOH A 12 2012 2012 HOH HOH . 
D 4 HOH A 13 2013 2013 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 19.84 16.012 -13.526 1 25.79 ? CHA HEM 1480 A 1 
HETATM 2 C CHB HEM . . . B 2 16.427 18.981 -15.48 1 23 ? CHB HEM 1480 A 1 
HETATM 3 C CHC HEM . . . B 2 19.924 22.128 -16.477 1 25.02 ? CHC HEM 1480 A 1 
HETATM 4 C CHD HEM . . . B 2 23.241 18.619 -15.67 1 27.52 ? CHD HEM 1480 A 1 
HETATM 5 C C1A HEM . . . B 2 18.65 16.561 -13.992 1 24.97 ? C1A HEM 1480 A 1 
HETATM 6 C C2A HEM . . . B 2 17.418 15.882 -13.957 1 24.81 ? C2A HEM 1480 A 1 
HETATM 7 C C3A HEM . . . B 2 16.456 16.695 -14.482 1 24.2 ? C3A HEM 1480 A 1 
HETATM 8 C C4A HEM . . . B 2 17.071 17.907 -14.876 1 23.59 ? C4A HEM 1480 A 1 
HETATM 9 C CMA HEM . . . B 2 14.999 16.333 -14.603 1 24.15 ? CMA HEM 1480 A 1 
HETATM 10 C CAA HEM . . . B 2 17.213 14.51 -13.386 1 25.91 ? CAA HEM 1480 A 1 
HETATM 11 C CBA HEM . . . B 2 17.126 13.423 -14.456 1 28.25 ? CBA HEM 1480 A 1 
HETATM 12 C CGA HEM . . . B 2 16.987 12.113 -13.735 1 29.43 ? CGA HEM 1480 A 1 
HETATM 13 O O1A HEM . . . B 2 16.465 12.066 -12.606 1 29.05 ? O1A HEM 1480 A 1 
HETATM 14 O O2A HEM . . . B 2 17.403 11.068 -14.267 1 30.82 ? O2A HEM 1480 A 1 
HETATM 15 C C1B HEM . . . B 2 17.117 20.141 -15.852 1 23.29 ? C1B HEM 1480 A 1 
HETATM 16 C C2B HEM . . . B 2 16.428 21.328 -16.247 1 22.97 ? C2B HEM 1480 A 1 
HETATM 17 C C3B HEM . . . B 2 17.421 22.233 -16.531 1 23.58 ? C3B HEM 1480 A 1 
HETATM 18 C C4B HEM . . . B 2 18.685 21.504 -16.286 1 24.14 ? C4B HEM 1480 A 1 
HETATM 19 C CMB HEM . . . B 2 14.938 21.525 -16.34 1 22.63 ? CMB HEM 1480 A 1 
HETATM 20 C CAB HEM . . . B 2 17.343 23.633 -16.989 1 23.86 ? CAB HEM 1480 A 1 
HETATM 21 C CBB HEM . . . B 2 16.37 24.449 -16.587 1 23 ? CBB HEM 1480 A 1 
HETATM 22 C C1C HEM . . . B 2 21.161 21.489 -16.361 1 25.91 ? C1C HEM 1480 A 1 
HETATM 23 C C2C HEM . . . B 2 22.443 22.055 -16.51 1 26.83 ? C2C HEM 1480 A 1 
HETATM 24 C C3C HEM . . . B 2 23.38 21.051 -16.273 1 27.66 ? C3C HEM 1480 A 1 
HETATM 25 C C4C HEM . . . B 2 22.682 19.852 -15.973 1 26.92 ? C4C HEM 1480 A 1 
HETATM 26 C CMC HEM . . . B 2 22.751 23.486 -16.865 1 27.25 ? CMC HEM 1480 A 1 
HETATM 27 C CAC HEM . . . B 2 24.85 21.141 -16.326 1 29.08 ? CAC HEM 1480 A 1 
HETATM 28 C CBC HEM . . . B 2 25.476 22.241 -15.929 1 28.78 ? CBC HEM 1480 A 1 
HETATM 29 C C1D HEM . . . B 2 22.521 17.663 -14.941 1 27.12 ? C1D HEM 1480 A 1 
HETATM 30 C C2D HEM . . . B 2 23.27 16.587 -14.291 1 27.77 ? C2D HEM 1480 A 1 
HETATM 31 C C3D HEM . . . B 2 22.314 15.837 -13.692 1 27.69 ? C3D HEM 1480 A 1 
HETATM 32 C C4D HEM . . . B 2 21.052 16.52 -14.003 1 26.53 ? C4D HEM 1480 A 1 
HETATM 33 C CMD HEM . . . B 2 24.755 16.346 -14.315 1 28.88 ? CMD HEM 1480 A 1 
HETATM 34 C CAD HEM . . . B 2 22.616 14.623 -12.861 1 28.71 ? CAD HEM 1480 A 1 
HETATM 35 C CBD HEM . . . B 2 21.637 13.464 -12.983 1 29.7 ? CBD HEM 1480 A 1 
HETATM 36 C CGD HEM . . . B 2 22.388 12.343 -12.321 1 32.23 ? CGD HEM 1480 A 1 
HETATM 37 O O1D HEM . . . B 2 22.663 11.342 -13.012 1 34.17 ? O1D HEM 1480 A 1 
HETATM 38 O O2D HEM . . . B 2 22.749 12.417 -11.128 1 32.63 ? O2D HEM 1480 A 1 
HETATM 39 N NA HEM . . . B 2 18.428 17.768 -14.634 1 24.67 ? NA HEM 1480 A 1 
HETATM 40 N NB HEM . . . B 2 18.45 20.243 -15.918 1 24.21 ? NB HEM 1480 A 1 
HETATM 41 N NC HEM . . . B 2 21.338 20.155 -16.046 1 26.36 ? NC HEM 1480 A 1 
HETATM 42 N ND HEM . . . B 2 21.195 17.598 -14.785 1 26.31 ? ND HEM 1480 A 1 
HETATM 43 FE FE HEM . . . B 2 19.894 18.85 -15.338 1 25.05 ? FE HEM 1480 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#