data_3ZG7
#
_model_server_result.job_id            17WMoN1PwIhA0U4vCXNAPg 
_model_server_result.datetime_utc      '2024-12-04 03:39:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3zg7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1642}' 
#
_entry.id    3ZG7 
#
_exptl.entry_id    3ZG7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3ZG7 
_cell.length_a            84.584 
_cell.length_b            127.798 
_cell.length_c            54.869 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ZG7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ILE 12 B ILE 189 1_555 B N MSE 13 B MSE 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 B C MSE 13 B MSE 190 1_555 B N GLU 14 B GLU 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 B C GLU 14 B GLU 191 1_555 B N MSE 15 B MSE 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 B C MSE 15 B MSE 192 1_555 B N TYR 16 B TYR 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale5 B C ASN 76 B ASN 253 1_555 B N MSE 77 B MSE 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale6 B C MSE 77 B MSE 254 1_555 B N VAL 78 B VAL 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale7 B C ALA 81 B ALA 258 1_555 B N MSE 82 B MSE 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale8 B C MSE 82 B MSE 259 1_555 B N VAL 83 B VAL 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale9 B C ILE 137 B ILE 314 1_555 B N MSE 138 B MSE 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale10 B C MSE 138 B MSE 315 1_555 B N GLN 139 B GLN 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale11 B C LEU 182 B LEU 359 1_555 B N MSE 183 B MSE 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale12 B C MSE 183 B MSE 360 1_555 B N ASP 184 B ASP 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale13 B C GLN 210 B GLN 387 1_555 B N MSE 211 B MSE 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale14 B C MSE 211 B MSE 388 1_555 B N LYS 212 B LYS 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale15 B C THR 218 B THR 395 1_555 B N MSE 219 B MSE 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale16 B C MSE 219 B MSE 396 1_555 B N LYS 220 B LYS 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale17 B C SER 237 B SER 414 1_555 B N MSE 238 B MSE 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale18 B C MSE 238 B MSE 415 1_555 B N LEU 239 B LEU 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale19 B C PRO 264 B PRO 441 1_555 B N MSE 265 B MSE 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale20 B C MSE 265 B MSE 442 1_555 B N TYR 266 B TYR 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale21 B C GLY 313 B GLY 490 1_555 B N MSE 314 B MSE 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale22 B C MSE 314 B MSE 491 1_555 B N SER 315 B SER 492 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale23 B C GLU 322 B GLU 499 1_555 B N MSE 323 B MSE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale24 B C MSE 323 B MSE 500 1_555 B N ALA 324 B ALA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale25 B C GLU 371 B GLU 548 1_555 B N MSE 372 B MSE 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale26 B C MSE 372 B MSE 549 1_555 B N THR 373 B THR 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale27 B C SER 374 B SER 551 1_555 B N MSE 375 B MSE 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale28 B C MSE 375 B MSE 552 1_555 B N LEU 376 B LEU 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale29 B C GLU 394 B GLU 571 1_555 B N MSE 395 B MSE 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale30 B C MSE 395 B MSE 572 1_555 B N ALA 396 B ALA 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale31 B C TRP 429 B TRP 606 1_555 B N MSE 430 B MSE 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale32 B C MSE 430 B MSE 607 1_555 B N GLY 431 B GLY 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale33 B C VAL 456 B VAL 633 1_555 B N MSE 457 B MSE 634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale34 B C MSE 457 B MSE 634 1_555 B N ASN 458 B ASN 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     3ZG7 
_atom_sites.fract_transf_matrix[1][1]    0.011823 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007825 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018225 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 TLA B 1 801 801 TLA TLA . 
D 4 GOL B 1 1642 1642 GOL GOL . 
E 5 HOH A 1 2001 2001 HOH HOH . 
E 5 HOH A 2 2002 2002 HOH HOH . 
E 5 HOH A 3 2003 2003 HOH HOH . 
F 5 HOH B 1 2001 2001 HOH HOH . 
F 5 HOH B 2 2002 2002 HOH HOH . 
F 5 HOH B 3 2003 2003 HOH HOH . 
F 5 HOH B 4 2004 2004 HOH HOH . 
F 5 HOH B 5 2005 2005 HOH HOH . 
F 5 HOH B 6 2006 2006 HOH HOH . 
F 5 HOH B 7 2007 2007 HOH HOH . 
F 5 HOH B 8 2008 2008 HOH HOH . 
F 5 HOH B 9 2009 2009 HOH HOH . 
F 5 HOH B 10 2010 2010 HOH HOH . 
F 5 HOH B 11 2011 2011 HOH HOH . 
F 5 HOH B 12 2012 2012 HOH HOH . 
F 5 HOH B 13 2013 2013 HOH HOH . 
F 5 HOH B 14 2014 2014 HOH HOH . 
F 5 HOH B 15 2015 2015 HOH HOH . 
F 5 HOH B 16 2016 2016 HOH HOH . 
F 5 HOH B 17 2017 2017 HOH HOH . 
F 5 HOH B 18 2018 2018 HOH HOH . 
F 5 HOH B 19 2019 2019 HOH HOH . 
F 5 HOH B 20 2020 2020 HOH HOH . 
F 5 HOH B 21 2021 2021 HOH HOH . 
F 5 HOH B 22 2022 2022 HOH HOH . 
F 5 HOH B 23 2023 2023 HOH HOH . 
F 5 HOH B 24 2024 2024 HOH HOH . 
F 5 HOH B 25 2025 2025 HOH HOH . 
F 5 HOH B 26 2026 2026 HOH HOH . 
F 5 HOH B 27 2027 2027 HOH HOH . 
F 5 HOH B 28 2028 2028 HOH HOH . 
F 5 HOH B 29 2029 2029 HOH HOH . 
F 5 HOH B 30 2030 2030 HOH HOH . 
F 5 HOH B 31 2031 2031 HOH HOH . 
F 5 HOH B 32 2032 2032 HOH HOH . 
F 5 HOH B 33 2033 2033 HOH HOH . 
F 5 HOH B 34 2034 2034 HOH HOH . 
F 5 HOH B 35 2035 2035 HOH HOH . 
F 5 HOH B 36 2036 2036 HOH HOH . 
F 5 HOH B 37 2037 2037 HOH HOH . 
F 5 HOH B 38 2038 2038 HOH HOH . 
F 5 HOH B 39 2039 2039 HOH HOH . 
F 5 HOH B 40 2040 2040 HOH HOH . 
F 5 HOH B 41 2041 2041 HOH HOH . 
F 5 HOH B 42 2042 2042 HOH HOH . 
F 5 HOH B 43 2043 2043 HOH HOH . 
F 5 HOH B 44 2044 2044 HOH HOH . 
F 5 HOH B 45 2045 2045 HOH HOH . 
F 5 HOH B 46 2046 2046 HOH HOH . 
F 5 HOH B 47 2047 2047 HOH HOH . 
F 5 HOH B 48 2048 2048 HOH HOH . 
F 5 HOH B 49 2049 2049 HOH HOH . 
F 5 HOH B 50 2050 2050 HOH HOH . 
F 5 HOH B 51 2051 2051 HOH HOH . 
F 5 HOH B 52 2052 2052 HOH HOH . 
F 5 HOH B 53 2053 2053 HOH HOH . 
F 5 HOH B 54 2054 2054 HOH HOH . 
F 5 HOH B 55 2055 2055 HOH HOH . 
F 5 HOH B 56 2056 2056 HOH HOH . 
F 5 HOH B 57 2057 2057 HOH HOH . 
F 5 HOH B 58 2058 2058 HOH HOH . 
F 5 HOH B 59 2059 2059 HOH HOH . 
F 5 HOH B 60 2060 2060 HOH HOH . 
F 5 HOH B 61 2061 2061 HOH HOH . 
F 5 HOH B 62 2062 2062 HOH HOH . 
F 5 HOH B 63 2063 2063 HOH HOH . 
F 5 HOH B 64 2064 2064 HOH HOH . 
F 5 HOH B 65 2065 2065 HOH HOH . 
F 5 HOH B 66 2066 2066 HOH HOH . 
F 5 HOH B 67 2067 2067 HOH HOH . 
F 5 HOH B 68 2068 2068 HOH HOH . 
F 5 HOH B 69 2069 2069 HOH HOH . 
F 5 HOH B 70 2070 2070 HOH HOH . 
F 5 HOH B 71 2071 2071 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -5.558 -38.824 -2.352 1 52.7 ? C1 GOL 1642 B 1 
HETATM 2 O O1 GOL . . . D 4 -4.933 -38.841 -3.625 1 61.52 ? O1 GOL 1642 B 1 
HETATM 3 C C2 GOL . . . D 4 -5.39 -40.187 -1.688 1 51.85 ? C2 GOL 1642 B 1 
HETATM 4 O O2 GOL . . . D 4 -6.35 -40.456 -0.686 1 53.74 ? O2 GOL 1642 B 1 
HETATM 5 C C3 GOL . . . D 4 -5.497 -41.261 -2.749 1 56.75 ? C3 GOL 1642 B 1 
HETATM 6 O O3 GOL . . . D 4 -4.707 -42.334 -2.307 1 61.35 ? O3 GOL 1642 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           394 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#