data_3ZG8
#
_model_server_result.job_id            9wMjowKcTD--o5sKvWteLw 
_model_server_result.datetime_utc      '2024-11-02 12:21:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3zg8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1645}' 
#
_entry.id    3ZG8 
#
_exptl.entry_id    3ZG8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3ZG8 
_cell.length_a            84.746 
_cell.length_b            128.294 
_cell.length_c            54.732 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ZG8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            OG 
_struct_conn.ptnr1_label_comp_id            SER 
_struct_conn.ptnr1_label_seq_id             217 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             SER 
_struct_conn.ptnr1_auth_seq_id              394 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            AIX 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             AIX 
_struct_conn.ptnr2_auth_seq_id              800 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.221 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 162 n n 
C1 C2 GOL sing 163 n n 
C1 H11 GOL sing 164 n n 
C1 H12 GOL sing 165 n n 
O1 HO1 GOL sing 166 n n 
C2 O2 GOL sing 167 n n 
C2 C3 GOL sing 168 n n 
C2 H2 GOL sing 169 n n 
O2 HO2 GOL sing 170 n n 
C3 O3 GOL sing 171 n n 
C3 H31 GOL sing 172 n n 
C3 H32 GOL sing 173 n n 
O3 HO3 GOL sing 174 n n 
#
_atom_sites.entry_id                     3ZG8 
_atom_sites.fract_transf_matrix[1][1]    0.0118 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007795 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018271 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 AIX B 1 800 800 AIX AIX . 
D 4 GOL B 1 1643 1643 GOL GOL . 
E 4 GOL B 1 1644 1644 GOL GOL . 
F 4 GOL B 1 1645 1645 GOL GOL . 
G 5 HOH A 1 2001 2001 HOH HOH . 
G 5 HOH A 2 2002 2002 HOH HOH . 
G 5 HOH A 3 2003 2003 HOH HOH . 
G 5 HOH A 4 2004 2004 HOH HOH . 
G 5 HOH A 5 2005 2005 HOH HOH . 
G 5 HOH A 6 2006 2006 HOH HOH . 
H 5 HOH B 1 2001 2001 HOH HOH . 
H 5 HOH B 2 2002 2002 HOH HOH . 
H 5 HOH B 3 2003 2003 HOH HOH . 
H 5 HOH B 4 2004 2004 HOH HOH . 
H 5 HOH B 5 2005 2005 HOH HOH . 
H 5 HOH B 6 2006 2006 HOH HOH . 
H 5 HOH B 7 2007 2007 HOH HOH . 
H 5 HOH B 8 2008 2008 HOH HOH . 
H 5 HOH B 9 2009 2009 HOH HOH . 
H 5 HOH B 10 2010 2010 HOH HOH . 
H 5 HOH B 11 2011 2011 HOH HOH . 
H 5 HOH B 12 2012 2012 HOH HOH . 
H 5 HOH B 13 2013 2013 HOH HOH . 
H 5 HOH B 14 2014 2014 HOH HOH . 
H 5 HOH B 15 2015 2015 HOH HOH . 
H 5 HOH B 16 2016 2016 HOH HOH . 
H 5 HOH B 17 2017 2017 HOH HOH . 
H 5 HOH B 18 2018 2018 HOH HOH . 
H 5 HOH B 19 2019 2019 HOH HOH . 
H 5 HOH B 20 2020 2020 HOH HOH . 
H 5 HOH B 21 2021 2021 HOH HOH . 
H 5 HOH B 22 2022 2022 HOH HOH . 
H 5 HOH B 23 2023 2023 HOH HOH . 
H 5 HOH B 24 2024 2024 HOH HOH . 
H 5 HOH B 25 2025 2025 HOH HOH . 
H 5 HOH B 26 2026 2026 HOH HOH . 
H 5 HOH B 27 2027 2027 HOH HOH . 
H 5 HOH B 28 2028 2028 HOH HOH . 
H 5 HOH B 29 2029 2029 HOH HOH . 
H 5 HOH B 30 2030 2030 HOH HOH . 
H 5 HOH B 31 2031 2031 HOH HOH . 
H 5 HOH B 32 2032 2032 HOH HOH . 
H 5 HOH B 33 2033 2033 HOH HOH . 
H 5 HOH B 34 2034 2034 HOH HOH . 
H 5 HOH B 35 2035 2035 HOH HOH . 
H 5 HOH B 36 2036 2036 HOH HOH . 
H 5 HOH B 37 2037 2037 HOH HOH . 
H 5 HOH B 38 2038 2038 HOH HOH . 
H 5 HOH B 39 2039 2039 HOH HOH . 
H 5 HOH B 40 2040 2040 HOH HOH . 
H 5 HOH B 41 2041 2041 HOH HOH . 
H 5 HOH B 42 2042 2042 HOH HOH . 
H 5 HOH B 43 2043 2043 HOH HOH . 
H 5 HOH B 44 2044 2044 HOH HOH . 
H 5 HOH B 45 2045 2045 HOH HOH . 
H 5 HOH B 46 2046 2046 HOH HOH . 
H 5 HOH B 47 2047 2047 HOH HOH . 
H 5 HOH B 48 2048 2048 HOH HOH . 
H 5 HOH B 49 2049 2049 HOH HOH . 
H 5 HOH B 50 2050 2050 HOH HOH . 
H 5 HOH B 51 2051 2051 HOH HOH . 
H 5 HOH B 52 2052 2052 HOH HOH . 
H 5 HOH B 53 2053 2053 HOH HOH . 
H 5 HOH B 54 2054 2054 HOH HOH . 
H 5 HOH B 55 2055 2055 HOH HOH . 
H 5 HOH B 56 2056 2056 HOH HOH . 
H 5 HOH B 57 2057 2057 HOH HOH . 
H 5 HOH B 58 2058 2058 HOH HOH . 
H 5 HOH B 59 2059 2059 HOH HOH . 
H 5 HOH B 60 2060 2060 HOH HOH . 
H 5 HOH B 61 2061 2061 HOH HOH . 
H 5 HOH B 62 2062 2062 HOH HOH . 
H 5 HOH B 63 2063 2063 HOH HOH . 
H 5 HOH B 64 2064 2064 HOH HOH . 
H 5 HOH B 65 2065 2065 HOH HOH . 
H 5 HOH B 66 2066 2066 HOH HOH . 
H 5 HOH B 67 2067 2067 HOH HOH . 
H 5 HOH B 68 2068 2068 HOH HOH . 
H 5 HOH B 69 2069 2069 HOH HOH . 
H 5 HOH B 70 2070 2070 HOH HOH . 
H 5 HOH B 71 2071 2071 HOH HOH . 
H 5 HOH B 72 2072 2072 HOH HOH . 
H 5 HOH B 73 2073 2073 HOH HOH . 
H 5 HOH B 74 2074 2074 HOH HOH . 
H 5 HOH B 75 2075 2075 HOH HOH . 
H 5 HOH B 76 2076 2076 HOH HOH . 
H 5 HOH B 77 2077 2077 HOH HOH . 
H 5 HOH B 78 2078 2078 HOH HOH . 
H 5 HOH B 79 2079 2079 HOH HOH . 
H 5 HOH B 80 2080 2080 HOH HOH . 
H 5 HOH B 81 2081 2081 HOH HOH . 
H 5 HOH B 82 2082 2082 HOH HOH . 
H 5 HOH B 83 2083 2083 HOH HOH . 
H 5 HOH B 84 2084 2084 HOH HOH . 
H 5 HOH B 85 2085 2085 HOH HOH . 
H 5 HOH B 86 2086 2086 HOH HOH . 
H 5 HOH B 87 2087 2087 HOH HOH . 
H 5 HOH B 88 2088 2088 HOH HOH . 
H 5 HOH B 89 2089 2089 HOH HOH . 
H 5 HOH B 90 2090 2090 HOH HOH . 
H 5 HOH B 91 2091 2091 HOH HOH . 
H 5 HOH B 92 2092 2092 HOH HOH . 
H 5 HOH B 93 2093 2093 HOH HOH . 
H 5 HOH B 94 2094 2094 HOH HOH . 
H 5 HOH B 95 2095 2095 HOH HOH . 
H 5 HOH B 96 2096 2096 HOH HOH . 
H 5 HOH B 97 2097 2097 HOH HOH . 
H 5 HOH B 98 2098 2098 HOH HOH . 
H 5 HOH B 99 2099 2099 HOH HOH . 
H 5 HOH B 100 2100 2100 HOH HOH . 
H 5 HOH B 101 2101 2101 HOH HOH . 
H 5 HOH B 102 2102 2102 HOH HOH . 
H 5 HOH B 103 2103 2103 HOH HOH . 
H 5 HOH B 104 2104 2104 HOH HOH . 
H 5 HOH B 105 2105 2105 HOH HOH . 
H 5 HOH B 106 2106 2106 HOH HOH . 
H 5 HOH B 107 2107 2107 HOH HOH . 
H 5 HOH B 108 2108 2108 HOH HOH . 
H 5 HOH B 109 2109 2109 HOH HOH . 
H 5 HOH B 110 2110 2110 HOH HOH . 
H 5 HOH B 111 2111 2111 HOH HOH . 
H 5 HOH B 112 2112 2112 HOH HOH . 
H 5 HOH B 113 2113 2113 HOH HOH . 
H 5 HOH B 114 2114 2114 HOH HOH . 
H 5 HOH B 115 2115 2115 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 4 4.683 -19.689 -1.476 1 26.14 ? C1 GOL 1645 B 1 
HETATM 2 O O1 GOL . . . F 4 5.998 -19.249 -1.17 1 29.01 ? O1 GOL 1645 B 1 
HETATM 3 C C2 GOL . . . F 4 4.04 -20.083 -0.146 1 30.93 ? C2 GOL 1645 B 1 
HETATM 4 O O2 GOL . . . F 4 3.13 -21.156 -0.331 1 30.47 ? O2 GOL 1645 B 1 
HETATM 5 C C3 GOL . . . F 4 5.156 -20.381 0.878 1 28.44 ? C3 GOL 1645 B 1 
HETATM 6 O O3 GOL . . . F 4 5.166 -21.696 1.416 1 23.17 ? O3 GOL 1645 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           231 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#