data_3ZG8 # _model_server_result.job_id VnQYpyKssYhsmzzorKi00Q _model_server_result.datetime_utc '2024-12-04 04:03:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zg8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":800}' # _entry.id 3ZG8 # _exptl.entry_id 3ZG8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ZG8 _cell.length_a 84.746 _cell.length_b 128.294 _cell.length_c 54.732 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZG8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 217 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 394 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id AIX _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id AIX _struct_conn.ptnr2_auth_seq_id 800 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.221 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H21 N3 O4 S' _chem_comp.formula_weight 351.421 _chem_comp.id AIX _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'AMPICILLIN (open form)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C8 AIX doub 1 n y C8 C7 AIX sing 2 n y C8 H8 AIX sing 3 n n C7 C5 AIX doub 4 n y C11 C5 AIX sing 5 n y C5 C4 AIX sing 6 n n C1 C6 AIX sing 7 n n C16 C6 AIX sing 8 n n C6 C12 AIX sing 9 n n C6 S1 AIX sing 10 n n C14 N1 AIX sing 11 n n N1 C3 AIX sing 12 n n N1 HN1 AIX sing 13 n n O2 C2 AIX doub 14 n n O1 C2 AIX sing 15 n n C2 C12 AIX sing 16 n n C12 N3 AIX sing 17 n n N3 C13 AIX sing 18 n n N3 HN3 AIX sing 19 n n C3 C4 AIX sing 20 n n C4 N2 AIX sing 21 n n C4 H4 AIX sing 22 n n C1 H1 AIX sing 23 n n C1 H1A AIX sing 24 n n C1 H1B AIX sing 25 n n C3 O3 AIX doub 26 n n C7 H7 AIX sing 27 n n C9 C10 AIX sing 28 n y C9 H9 AIX sing 29 n n C10 C11 AIX doub 30 n y C10 H10 AIX sing 31 n n C11 H11 AIX sing 32 n n C12 H12 AIX sing 33 n n S1 C13 AIX sing 34 n n C13 C14 AIX sing 35 n n C13 H13 AIX sing 36 n n C15 C14 AIX sing 37 n n C14 H14 AIX sing 38 n n O4 C15 AIX doub 39 n n C15 H15 AIX sing 40 n n C16 H16 AIX sing 41 n n C16 H16A AIX sing 42 n n C16 H16B AIX sing 43 n n N2 HN2 AIX sing 44 n n N2 HN2A AIX sing 45 n n O1 HO1 AIX sing 46 n n # _atom_sites.entry_id 3ZG8 _atom_sites.fract_transf_matrix[1][1] 0.0118 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007795 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018271 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 AIX B 1 800 800 AIX AIX . D 4 GOL B 1 1643 1643 GOL GOL . E 4 GOL B 1 1644 1644 GOL GOL . F 4 GOL B 1 1645 1645 GOL GOL . G 5 HOH A 1 2001 2001 HOH HOH . G 5 HOH A 2 2002 2002 HOH HOH . G 5 HOH A 3 2003 2003 HOH HOH . G 5 HOH A 4 2004 2004 HOH HOH . G 5 HOH A 5 2005 2005 HOH HOH . G 5 HOH A 6 2006 2006 HOH HOH . H 5 HOH B 1 2001 2001 HOH HOH . H 5 HOH B 2 2002 2002 HOH HOH . H 5 HOH B 3 2003 2003 HOH HOH . H 5 HOH B 4 2004 2004 HOH HOH . H 5 HOH B 5 2005 2005 HOH HOH . H 5 HOH B 6 2006 2006 HOH HOH . H 5 HOH B 7 2007 2007 HOH HOH . H 5 HOH B 8 2008 2008 HOH HOH . H 5 HOH B 9 2009 2009 HOH HOH . H 5 HOH B 10 2010 2010 HOH HOH . H 5 HOH B 11 2011 2011 HOH HOH . H 5 HOH B 12 2012 2012 HOH HOH . H 5 HOH B 13 2013 2013 HOH HOH . H 5 HOH B 14 2014 2014 HOH HOH . H 5 HOH B 15 2015 2015 HOH HOH . H 5 HOH B 16 2016 2016 HOH HOH . H 5 HOH B 17 2017 2017 HOH HOH . H 5 HOH B 18 2018 2018 HOH HOH . H 5 HOH B 19 2019 2019 HOH HOH . H 5 HOH B 20 2020 2020 HOH HOH . H 5 HOH B 21 2021 2021 HOH HOH . H 5 HOH B 22 2022 2022 HOH HOH . H 5 HOH B 23 2023 2023 HOH HOH . H 5 HOH B 24 2024 2024 HOH HOH . H 5 HOH B 25 2025 2025 HOH HOH . H 5 HOH B 26 2026 2026 HOH HOH . H 5 HOH B 27 2027 2027 HOH HOH . H 5 HOH B 28 2028 2028 HOH HOH . H 5 HOH B 29 2029 2029 HOH HOH . H 5 HOH B 30 2030 2030 HOH HOH . H 5 HOH B 31 2031 2031 HOH HOH . H 5 HOH B 32 2032 2032 HOH HOH . H 5 HOH B 33 2033 2033 HOH HOH . H 5 HOH B 34 2034 2034 HOH HOH . H 5 HOH B 35 2035 2035 HOH HOH . H 5 HOH B 36 2036 2036 HOH HOH . H 5 HOH B 37 2037 2037 HOH HOH . H 5 HOH B 38 2038 2038 HOH HOH . H 5 HOH B 39 2039 2039 HOH HOH . H 5 HOH B 40 2040 2040 HOH HOH . H 5 HOH B 41 2041 2041 HOH HOH . H 5 HOH B 42 2042 2042 HOH HOH . H 5 HOH B 43 2043 2043 HOH HOH . H 5 HOH B 44 2044 2044 HOH HOH . H 5 HOH B 45 2045 2045 HOH HOH . H 5 HOH B 46 2046 2046 HOH HOH . H 5 HOH B 47 2047 2047 HOH HOH . H 5 HOH B 48 2048 2048 HOH HOH . H 5 HOH B 49 2049 2049 HOH HOH . H 5 HOH B 50 2050 2050 HOH HOH . H 5 HOH B 51 2051 2051 HOH HOH . H 5 HOH B 52 2052 2052 HOH HOH . H 5 HOH B 53 2053 2053 HOH HOH . H 5 HOH B 54 2054 2054 HOH HOH . H 5 HOH B 55 2055 2055 HOH HOH . H 5 HOH B 56 2056 2056 HOH HOH . H 5 HOH B 57 2057 2057 HOH HOH . H 5 HOH B 58 2058 2058 HOH HOH . H 5 HOH B 59 2059 2059 HOH HOH . H 5 HOH B 60 2060 2060 HOH HOH . H 5 HOH B 61 2061 2061 HOH HOH . H 5 HOH B 62 2062 2062 HOH HOH . H 5 HOH B 63 2063 2063 HOH HOH . H 5 HOH B 64 2064 2064 HOH HOH . H 5 HOH B 65 2065 2065 HOH HOH . H 5 HOH B 66 2066 2066 HOH HOH . H 5 HOH B 67 2067 2067 HOH HOH . H 5 HOH B 68 2068 2068 HOH HOH . H 5 HOH B 69 2069 2069 HOH HOH . H 5 HOH B 70 2070 2070 HOH HOH . H 5 HOH B 71 2071 2071 HOH HOH . H 5 HOH B 72 2072 2072 HOH HOH . H 5 HOH B 73 2073 2073 HOH HOH . H 5 HOH B 74 2074 2074 HOH HOH . H 5 HOH B 75 2075 2075 HOH HOH . H 5 HOH B 76 2076 2076 HOH HOH . H 5 HOH B 77 2077 2077 HOH HOH . H 5 HOH B 78 2078 2078 HOH HOH . H 5 HOH B 79 2079 2079 HOH HOH . H 5 HOH B 80 2080 2080 HOH HOH . H 5 HOH B 81 2081 2081 HOH HOH . H 5 HOH B 82 2082 2082 HOH HOH . H 5 HOH B 83 2083 2083 HOH HOH . H 5 HOH B 84 2084 2084 HOH HOH . H 5 HOH B 85 2085 2085 HOH HOH . H 5 HOH B 86 2086 2086 HOH HOH . H 5 HOH B 87 2087 2087 HOH HOH . H 5 HOH B 88 2088 2088 HOH HOH . H 5 HOH B 89 2089 2089 HOH HOH . H 5 HOH B 90 2090 2090 HOH HOH . H 5 HOH B 91 2091 2091 HOH HOH . H 5 HOH B 92 2092 2092 HOH HOH . H 5 HOH B 93 2093 2093 HOH HOH . H 5 HOH B 94 2094 2094 HOH HOH . H 5 HOH B 95 2095 2095 HOH HOH . H 5 HOH B 96 2096 2096 HOH HOH . H 5 HOH B 97 2097 2097 HOH HOH . H 5 HOH B 98 2098 2098 HOH HOH . H 5 HOH B 99 2099 2099 HOH HOH . H 5 HOH B 100 2100 2100 HOH HOH . H 5 HOH B 101 2101 2101 HOH HOH . H 5 HOH B 102 2102 2102 HOH HOH . H 5 HOH B 103 2103 2103 HOH HOH . H 5 HOH B 104 2104 2104 HOH HOH . H 5 HOH B 105 2105 2105 HOH HOH . H 5 HOH B 106 2106 2106 HOH HOH . H 5 HOH B 107 2107 2107 HOH HOH . H 5 HOH B 108 2108 2108 HOH HOH . H 5 HOH B 109 2109 2109 HOH HOH . H 5 HOH B 110 2110 2110 HOH HOH . H 5 HOH B 111 2111 2111 HOH HOH . H 5 HOH B 112 2112 2112 HOH HOH . H 5 HOH B 113 2113 2113 HOH HOH . H 5 HOH B 114 2114 2114 HOH HOH . H 5 HOH B 115 2115 2115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 AIX . . . C 3 -4.78 -29.949 5.614 1 23.27 ? C8 AIX 800 B 1 HETATM 2 C C5 AIX . . . C 3 -3.013 -30.466 7.099 1 24.53 ? C5 AIX 800 B 1 HETATM 3 C C6 AIX . . . C 3 -2.348 -34.968 4.906 1 21.78 ? C6 AIX 800 B 1 HETATM 4 N N1 AIX . . . C 3 -0.357 -32.218 6.658 1 17.31 ? N1 AIX 800 B 1 HETATM 5 C C2 AIX . . . C 3 -0.988 -35.226 2.749 1 24.85 ? C2 AIX 800 B 1 HETATM 6 N N3 AIX . . . C 3 -0.102 -35.058 4.946 1 16.05 ? N3 AIX 800 B 1 HETATM 7 C C4 AIX . . . C 3 -1.589 -30.354 7.497 1 22.09 ? C4 AIX 800 B 1 HETATM 8 C C1 AIX . . . C 3 -3.45 -34.129 4.369 1 24.91 ? C1 AIX 800 B 1 HETATM 9 C C3 AIX . . . C 3 -0.895 -31.654 7.693 1 22.16 ? C3 AIX 800 B 1 HETATM 10 C C7 AIX . . . C 3 -3.501 -29.848 5.998 1 20.58 ? C7 AIX 800 B 1 HETATM 11 C C9 AIX . . . C 3 -5.604 -30.701 6.334 1 19.92 ? C9 AIX 800 B 1 HETATM 12 C C10 AIX . . . C 3 -5.171 -31.342 7.411 1 26.07 ? C10 AIX 800 B 1 HETATM 13 C C11 AIX . . . C 3 -3.891 -31.223 7.805 1 25.82 ? C11 AIX 800 B 1 HETATM 14 C C12 AIX . . . C 3 -1.087 -34.635 4.099 1 19.48 ? C12 AIX 800 B 1 HETATM 15 C C13 AIX . . . C 3 -0.303 -34.711 6.327 1 18.76 ? C13 AIX 800 B 1 HETATM 16 C C14 AIX . . . C 3 0.418 -33.419 6.755 1 19.8 ? C14 AIX 800 B 1 HETATM 17 C C15 AIX . . . C 3 1.74 -33.414 5.986 1 22.09 ? C15 AIX 800 B 1 HETATM 18 C C16 AIX . . . C 3 -2.763 -36.356 4.662 1 20.49 ? C16 AIX 800 B 1 HETATM 19 N N2 AIX . . . C 3 -1.52 -29.656 8.717 1 26.94 ? N2 AIX 800 B 1 HETATM 20 O O1 AIX . . . C 3 -0.264 -36.116 2.434 1 16.99 ? O1 AIX 800 B 1 HETATM 21 O O2 AIX . . . C 3 -1.665 -34.732 1.947 1 26.02 ? O2 AIX 800 B 1 HETATM 22 O O3 AIX . . . C 3 -0.868 -32.13 8.742 1 17.84 ? O3 AIX 800 B 1 HETATM 23 O O4 AIX . . . C 3 1.838 -32.68 5.071 1 17.55 ? O4 AIX 800 B 1 HETATM 24 S S1 AIX . . . C 3 -2.03 -34.787 6.639 1 20.46 ? S1 AIX 800 B 1 HETATM 25 H H8 AIX . . . C 3 -5.097 -29.486 4.823 1 27.92 ? H8 AIX 800 B 1 HETATM 26 H HN1 AIX . . . C 3 -0.381 -31.776 5.856 1 20.77 ? HN1 AIX 800 B 1 HETATM 27 H HN3 AIX . . . C 3 0.576 -35.515 4.542 1 19.25 ? HN3 AIX 800 B 1 HETATM 28 H H4 AIX . . . C 3 -1.125 -29.808 6.848 1 26.51 ? H4 AIX 800 B 1 HETATM 29 H H1 AIX . . . C 3 -4.268 -34.315 4.862 1 29.89 ? H1 AIX 800 B 1 HETATM 30 H H1A AIX . . . C 3 -3.22 -33.198 4.466 1 29.89 ? H1A AIX 800 B 1 HETATM 31 H H1B AIX . . . C 3 -3.584 -34.332 3.432 1 29.89 ? H1B AIX 800 B 1 HETATM 32 H H7 AIX . . . C 3 -2.892 -29.291 5.463 1 24.69 ? H7 AIX 800 B 1 HETATM 33 H H9 AIX . . . C 3 -6.545 -30.785 6.064 1 23.9 ? H9 AIX 800 B 1 HETATM 34 H H10 AIX . . . C 3 -5.791 -31.882 7.935 1 31.28 ? H10 AIX 800 B 1 HETATM 35 H H11 AIX . . . C 3 -3.587 -31.7 8.594 1 30.98 ? H11 AIX 800 B 1 HETATM 36 H H12 AIX . . . C 3 -1.02 -33.672 4.032 1 23.37 ? H12 AIX 800 B 1 HETATM 37 H H13 AIX . . . C 3 0.091 -35.42 6.875 1 22.51 ? H13 AIX 800 B 1 HETATM 38 H H14 AIX . . . C 3 0.662 -33.576 7.678 1 23.76 ? H14 AIX 800 B 1 HETATM 39 H H15 AIX . . . C 3 2.363 -34.157 6.083 1 26.51 ? H15 AIX 800 B 1 HETATM 40 H H16 AIX . . . C 3 -3.472 -36.6 5.29 1 24.59 ? H16 AIX 800 B 1 HETATM 41 H H16A AIX . . . C 3 -3.096 -36.439 3.746 1 24.59 ? H16A AIX 800 B 1 HETATM 42 H H16B AIX . . . C 3 -1.99 -36.958 4.788 1 24.59 ? H16B AIX 800 B 1 HETATM 43 H HN2 AIX . . . C 3 -1.245 -30.225 9.379 1 32.33 ? HN2 AIX 800 B 1 HETATM 44 H HN2A AIX . . . C 3 -0.926 -28.969 8.641 1 32.33 ? HN2A AIX 800 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 44 #