data_3ZGA # _model_server_result.job_id pWvSSzMySyPOZnRM3JwwhA _model_server_result.datetime_utc '2024-11-02 10:27:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zga # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 3ZGA # _exptl.entry_id 3ZGA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 380.416 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,4S)-2-[(1R)-1-{[(2S)-2-carboxy-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ZGA _cell.length_a 84.813 _cell.length_b 127.777 _cell.length_c 54.661 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZGA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 217 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 394 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C _struct_conn.ptnr2_label_comp_id CB9 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CB9 _struct_conn.ptnr2_auth_seq_id 801 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.412 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H20 N2 O6 S' _chem_comp.formula_weight 380.416 _chem_comp.id CB9 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,4S)-2-[(1R)-1-{[(2S)-2-carboxy-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Bound form of Carbenicillin' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O CB9 doub 70 n n C CA CB9 sing 71 n n N CA CB9 sing 72 n n N CAT CB9 sing 73 n n CA CB CB9 sing 74 n n CB NAP CB9 sing 75 n n CB SAQ CB9 sing 76 n n CAA CAZ CB9 sing 77 n n CAB CAZ CB9 sing 78 n n OAD CAR CB9 doub 79 n n OAE CAS CB9 doub 80 n n OAF CAT CB9 doub 81 n n OAG CAR CB9 sing 82 n n OAH CAS CB9 sing 83 n n CAJ CAK CB9 doub 84 n y CAJ CAL CB9 sing 85 n y CAK CAM CB9 sing 86 n y CAL CAN CB9 doub 87 n y CAM CAU CB9 doub 88 n y CAN CAU CB9 sing 89 n y NAP CAX CB9 sing 90 n n SAQ CAZ CB9 sing 91 n n CAR CAX CB9 sing 92 n n CAS CAY CB9 sing 93 n n CAT CAY CB9 sing 94 n n CAU CAY CB9 sing 95 n n CAX CAZ CB9 sing 96 n n C H CB9 sing 97 n n N HN CB9 sing 98 n n CA HA CB9 sing 99 n n CB HB CB9 sing 100 n n CAA HAA CB9 sing 101 n n CAA HAAA CB9 sing 102 n n CAA HAAB CB9 sing 103 n n CAB HAB CB9 sing 104 n n CAB HABA CB9 sing 105 n n CAB HABB CB9 sing 106 n n OAG HOAG CB9 sing 107 n n OAH HOAH CB9 sing 108 n n CAJ HAJ CB9 sing 109 n n CAK HAK CB9 sing 110 n n CAL HAL CB9 sing 111 n n CAM HAM CB9 sing 112 n n CAN HAN CB9 sing 113 n n NAP HNAP CB9 sing 114 n n CAX HAX CB9 sing 115 n n CAY HAY CB9 sing 116 n n # _atom_sites.entry_id 3ZGA _atom_sites.fract_transf_matrix[1][1] 0.011791 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007826 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CB9 B 1 801 801 CB9 CB9 . D 4 GOL B 1 1642 1642 GOL GOL . E 4 GOL B 1 1643 1643 GOL GOL . F 4 GOL B 1 1644 1644 GOL GOL . G 5 HOH A 1 2001 2001 HOH HOH . G 5 HOH A 2 2002 2002 HOH HOH . G 5 HOH A 3 2003 2003 HOH HOH . G 5 HOH A 4 2004 2004 HOH HOH . H 5 HOH B 1 2001 2001 HOH HOH . H 5 HOH B 2 2002 2002 HOH HOH . H 5 HOH B 3 2003 2003 HOH HOH . H 5 HOH B 4 2004 2004 HOH HOH . H 5 HOH B 5 2005 2005 HOH HOH . H 5 HOH B 6 2006 2006 HOH HOH . H 5 HOH B 7 2007 2007 HOH HOH . H 5 HOH B 8 2008 2008 HOH HOH . H 5 HOH B 9 2009 2009 HOH HOH . H 5 HOH B 10 2010 2010 HOH HOH . H 5 HOH B 11 2011 2011 HOH HOH . H 5 HOH B 12 2012 2012 HOH HOH . H 5 HOH B 13 2013 2013 HOH HOH . H 5 HOH B 14 2014 2014 HOH HOH . H 5 HOH B 15 2015 2015 HOH HOH . H 5 HOH B 16 2016 2016 HOH HOH . H 5 HOH B 17 2017 2017 HOH HOH . H 5 HOH B 18 2018 2018 HOH HOH . H 5 HOH B 19 2019 2019 HOH HOH . H 5 HOH B 20 2020 2020 HOH HOH . H 5 HOH B 21 2021 2021 HOH HOH . H 5 HOH B 22 2022 2022 HOH HOH . H 5 HOH B 23 2023 2023 HOH HOH . H 5 HOH B 24 2024 2024 HOH HOH . H 5 HOH B 25 2025 2025 HOH HOH . H 5 HOH B 26 2026 2026 HOH HOH . H 5 HOH B 27 2027 2027 HOH HOH . H 5 HOH B 28 2028 2028 HOH HOH . H 5 HOH B 29 2029 2029 HOH HOH . H 5 HOH B 30 2030 2030 HOH HOH . H 5 HOH B 31 2031 2031 HOH HOH . H 5 HOH B 32 2032 2032 HOH HOH . H 5 HOH B 33 2033 2033 HOH HOH . H 5 HOH B 34 2034 2034 HOH HOH . H 5 HOH B 35 2035 2035 HOH HOH . H 5 HOH B 36 2036 2036 HOH HOH . H 5 HOH B 37 2037 2037 HOH HOH . H 5 HOH B 38 2038 2038 HOH HOH . H 5 HOH B 39 2039 2039 HOH HOH . H 5 HOH B 40 2040 2040 HOH HOH . H 5 HOH B 41 2041 2041 HOH HOH . H 5 HOH B 42 2042 2042 HOH HOH . H 5 HOH B 43 2043 2043 HOH HOH . H 5 HOH B 44 2044 2044 HOH HOH . H 5 HOH B 45 2045 2045 HOH HOH . H 5 HOH B 46 2046 2046 HOH HOH . H 5 HOH B 47 2047 2047 HOH HOH . H 5 HOH B 48 2048 2048 HOH HOH . H 5 HOH B 49 2049 2049 HOH HOH . H 5 HOH B 50 2050 2050 HOH HOH . H 5 HOH B 51 2051 2051 HOH HOH . H 5 HOH B 52 2052 2052 HOH HOH . H 5 HOH B 53 2053 2053 HOH HOH . H 5 HOH B 54 2054 2054 HOH HOH . H 5 HOH B 55 2055 2055 HOH HOH . H 5 HOH B 56 2056 2056 HOH HOH . H 5 HOH B 57 2057 2057 HOH HOH . H 5 HOH B 58 2058 2058 HOH HOH . H 5 HOH B 59 2059 2059 HOH HOH . H 5 HOH B 60 2060 2060 HOH HOH . H 5 HOH B 61 2061 2061 HOH HOH . H 5 HOH B 62 2062 2062 HOH HOH . H 5 HOH B 63 2063 2063 HOH HOH . H 5 HOH B 64 2064 2064 HOH HOH . H 5 HOH B 65 2065 2065 HOH HOH . H 5 HOH B 66 2066 2066 HOH HOH . H 5 HOH B 67 2067 2067 HOH HOH . H 5 HOH B 68 2068 2068 HOH HOH . H 5 HOH B 69 2069 2069 HOH HOH . H 5 HOH B 70 2070 2070 HOH HOH . H 5 HOH B 71 2071 2071 HOH HOH . H 5 HOH B 72 2072 2072 HOH HOH . H 5 HOH B 73 2073 2073 HOH HOH . H 5 HOH B 74 2074 2074 HOH HOH . H 5 HOH B 75 2075 2075 HOH HOH . H 5 HOH B 76 2076 2076 HOH HOH . H 5 HOH B 77 2077 2077 HOH HOH . H 5 HOH B 78 2078 2078 HOH HOH . H 5 HOH B 79 2079 2079 HOH HOH . H 5 HOH B 80 2080 2080 HOH HOH . H 5 HOH B 81 2081 2081 HOH HOH . H 5 HOH B 82 2082 2082 HOH HOH . H 5 HOH B 83 2083 2083 HOH HOH . H 5 HOH B 84 2084 2084 HOH HOH . H 5 HOH B 85 2085 2085 HOH HOH . H 5 HOH B 86 2086 2086 HOH HOH . H 5 HOH B 87 2087 2087 HOH HOH . H 5 HOH B 88 2088 2088 HOH HOH . H 5 HOH B 89 2089 2089 HOH HOH . H 5 HOH B 90 2090 2090 HOH HOH . H 5 HOH B 91 2091 2091 HOH HOH . H 5 HOH B 92 2092 2092 HOH HOH . H 5 HOH B 93 2093 2093 HOH HOH . H 5 HOH B 94 2094 2094 HOH HOH . H 5 HOH B 95 2095 2095 HOH HOH . H 5 HOH B 96 2096 2096 HOH HOH . H 5 HOH B 97 2097 2097 HOH HOH . H 5 HOH B 98 2098 2098 HOH HOH . H 5 HOH B 99 2099 2099 HOH HOH . H 5 HOH B 100 2100 2100 HOH HOH . H 5 HOH B 101 2101 2101 HOH HOH . H 5 HOH B 102 2102 2102 HOH HOH . H 5 HOH B 103 2103 2103 HOH HOH . H 5 HOH B 104 2104 2104 HOH HOH . H 5 HOH B 105 2105 2105 HOH HOH . H 5 HOH B 106 2106 2106 HOH HOH . H 5 HOH B 107 2107 2107 HOH HOH . H 5 HOH B 108 2108 2108 HOH HOH . H 5 HOH B 109 2109 2109 HOH HOH . H 5 HOH B 110 2110 2110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C CB9 . . . C 3 1.692 -33.313 5.976 1 49.4 ? C CB9 801 B 1 HETATM 2 N N CB9 . . . C 3 -0.066 -31.985 6.656 1 46.71 ? N CB9 801 B 1 HETATM 3 O O CB9 . . . C 3 1.677 -32.759 4.876 1 41.95 ? O CB9 801 B 1 HETATM 4 C CA CB9 . . . C 3 0.451 -33.333 6.8 1 47.46 ? CA CB9 801 B 1 HETATM 5 C CB CB9 . . . C 3 -0.529 -34.204 6.067 1 49.06 ? CB CB9 801 B 1 HETATM 6 C CAA CB9 . . . C 3 -3.637 -34.164 4.711 1 53.22 ? CAA CB9 801 B 1 HETATM 7 C CAB CB9 . . . C 3 -3.488 -36.441 5.409 1 65.42 ? CAB CB9 801 B 1 HETATM 8 O OAD CB9 . . . C 3 -0.431 -35.773 2.21 1 47.27 ? OAD CB9 801 B 1 HETATM 9 O OAE CB9 . . . C 3 -0.636 -29.425 9.523 1 82.78 ? OAE CB9 801 B 1 HETATM 10 O OAF CB9 . . . C 3 -1.392 -31.954 8.646 1 41.2 ? OAF CB9 801 B 1 HETATM 11 O OAG CB9 . . . C 3 -2.058 -34.117 2.402 1 70.19 ? OAG CB9 801 B 1 HETATM 12 O OAH CB9 . . . C 3 -0.719 -27.783 8.083 1 71.45 ? OAH CB9 801 B 1 HETATM 13 C CAJ CB9 . . . C 3 -5.753 -30.004 7.228 1 58.25 ? CAJ CB9 801 B 1 HETATM 14 C CAK CB9 . . . C 3 -5.096 -29.848 8.458 1 66.7 ? CAK CB9 801 B 1 HETATM 15 C CAL CB9 . . . C 3 -5.022 -30.136 6.053 1 52.21 ? CAL CB9 801 B 1 HETATM 16 C CAM CB9 . . . C 3 -3.704 -29.829 8.512 1 64.79 ? CAM CB9 801 B 1 HETATM 17 C CAN CB9 . . . C 3 -3.623 -30.121 6.115 1 57.88 ? CAN CB9 801 B 1 HETATM 18 N NAP CB9 . . . C 3 -0.26 -34.628 4.731 1 51.4 ? NAP CB9 801 B 1 HETATM 19 S SAQ CB9 . . . C 3 -1.93 -34.697 6.629 1 48.39 ? SAQ CB9 801 B 1 HETATM 20 C CAR CB9 . . . C 3 -1.587 -35.368 2.888 1 64.3 ? CAR CB9 801 B 1 HETATM 21 C CAS CB9 . . . C 3 -0.919 -29.005 8.365 1 75.35 ? CAS CB9 801 B 1 HETATM 22 C CAT CB9 . . . C 3 -1.001 -31.337 7.632 1 52.06 ? CAT CB9 801 B 1 HETATM 23 C CAU CB9 . . . C 3 -2.962 -29.959 7.329 1 62.38 ? CAU CB9 801 B 1 HETATM 24 C CAX CB9 . . . C 3 -1.429 -35.484 4.181 1 67.16 ? CAX CB9 801 B 1 HETATM 25 C CAY CB9 . . . C 3 -1.473 -29.961 7.349 1 65.74 ? CAY CB9 801 B 1 HETATM 26 C CAZ CB9 . . . C 3 -2.705 -35.182 5.208 1 62.59 ? CAZ CB9 801 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #