data_3ZGP
#
_model_server_result.job_id            upv86HNQR8c6fVXAXZQs0Q 
_model_server_result.datetime_utc      '2025-04-25 18:24:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3zgp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":130}' 
#
_entry.id    3ZGP 
#
_exptl.entry_id    3ZGP 
_exptl.method      'SOLUTION NMR' 
#
_entity.details                     ? 
_entity.formula_weight              477.531 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3ZGP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ZGP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            CAA 
_struct_conn.ptnr1_label_comp_id            1RG 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             1RG 
_struct_conn.ptnr1_auth_seq_id              130 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             105 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              442 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.748 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C22 H27 N3 O7 S' 
_chem_comp.formula_weight    477.531 
_chem_comp.id                1RG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ERTAPENEM, bound form PRE-ISOMERIZED' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O 1RG doub 1 n n 
C CA 1RG sing 2 n n 
C NAX 1RG sing 3 n n 
N CA 1RG sing 4 n n 
N CD 1RG sing 5 n n 
CA CB 1RG sing 6 n n 
CB CG 1RG sing 7 n n 
CD CG 1RG sing 8 n n 
CG SAK 1RG sing 9 n n 
CAA CAB 1RG sing 10 n n 
CAA OAC 1RG doub 11 n n 
CAB CAD 1RG sing 12 n n 
CAB CAE 1RG sing 13 n n 
CAD CAH 1RG sing 14 n n 
CAD NAJ 1RG sing 15 n n 
CAE CAF 1RG sing 16 n n 
CAE OAG 1RG sing 17 n n 
CAH CAI 1RG sing 18 n n 
CAH CAS 1RG sing 19 n n 
CAI SAK 1RG sing 20 n n 
CAI CAL 1RG doub 21 n n 
NAJ CAL 1RG sing 22 n n 
CAL CAM 1RG sing 23 n n 
CAM OAT 1RG doub 24 n n 
CAM OAU 1RG sing 25 n n 
NAX CAY 1RG sing 26 n n 
CAY CAZ 1RG doub 27 n y 
CAY CBD 1RG sing 28 n y 
CAZ CBA 1RG sing 29 n y 
CBA CBB 1RG doub 30 n y 
CBA CBE 1RG sing 31 n n 
CBB CBC 1RG sing 32 n y 
CBC CBD 1RG doub 33 n y 
CBE OBF 1RG sing 34 n n 
CBE OBG 1RG doub 35 n n 
N HN 1RG sing 36 n n 
CA HA 1RG sing 37 n n 
CB HB 1RG sing 38 n n 
CB HBA 1RG sing 39 n n 
CD HD 1RG sing 40 n n 
CD HDA 1RG sing 41 n n 
CG HG 1RG sing 42 n n 
CAA HAA 1RG sing 43 n n 
CAB HAB 1RG sing 44 n n 
CAD HAD 1RG sing 45 n n 
CAE HAE 1RG sing 46 n n 
CAF HAF 1RG sing 47 n n 
CAF HAFA 1RG sing 48 n n 
CAF HAFB 1RG sing 49 n n 
OAG HOAG 1RG sing 50 n n 
CAH HAH 1RG sing 51 n n 
NAJ HNAJ 1RG sing 52 n n 
CAS HAS 1RG sing 53 n n 
CAS HASA 1RG sing 54 n n 
CAS HASB 1RG sing 55 n n 
NAX HNAX 1RG sing 56 n n 
CAZ HAZ 1RG sing 57 n n 
CBB HBB 1RG sing 58 n n 
CBC HBC 1RG sing 59 n n 
CBD HBD 1RG sing 60 n n 
OAU HOAU 1RG sing 61 n n 
OBF HOBF 1RG sing 62 n n 
#
_atom_sites.entry_id                     3ZGP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          B 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           1RG 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      130 
_pdbx_nonpoly_scheme.auth_seq_num     130 
_pdbx_nonpoly_scheme.pdb_mon_id       1RG 
_pdbx_nonpoly_scheme.auth_mon_id      1RG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C 1RG . . . B 2 -11.821 -6.472 8.5 1 2.42 ? C 1RG 130 A 1 
HETATM 2 N N 1RG . . . B 2 -10.337 -7.148 6.668 1 2.7 ? N 1RG 130 A 1 
HETATM 3 O O 1RG . . . B 2 -12.119 -5.277 8.495 1 2.05 ? O 1RG 130 A 1 
HETATM 4 C CA 1RG . . . B 2 -10.405 -6.906 8.121 1 2.68 ? CA 1RG 130 A 1 
HETATM 5 C CB 1RG . . . B 2 -9.42 -5.755 8.355 1 2.2 ? CB 1RG 130 A 1 
HETATM 6 C CD 1RG . . . B 2 -10.173 -5.812 6.127 1 2.17 ? CD 1RG 130 A 1 
HETATM 7 C CG 1RG . . . B 2 -9.023 -5.298 6.966 1 1.53 ? CG 1RG 130 A 1 
HETATM 8 C CAA 1RG . . . B 2 -6.791 -2.072 1.545 1 0.28 ? CAA 1RG 130 A 1 
HETATM 9 C CAB 1RG . . . B 2 -6.629 -3.558 2.017 1 0.19 ? CAB 1RG 130 A 1 
HETATM 10 O OAC 1RG . . . B 2 -7.857 -1.486 1.647 1 0.43 ? OAC 1RG 130 A 1 
HETATM 11 C CAD 1RG . . . B 2 -7.719 -3.886 3.108 1 0.25 ? CAD 1RG 130 A 1 
HETATM 12 C CAE 1RG . . . B 2 -6.618 -4.546 0.865 1 0.15 ? CAE 1RG 130 A 1 
HETATM 13 C CAF 1RG . . . B 2 -6.443 -5.974 1.367 1 0.11 ? CAF 1RG 130 A 1 
HETATM 14 O OAG 1RG . . . B 2 -7.845 -4.447 0.131 1 0.2 ? OAG 1RG 130 A 1 
HETATM 15 C CAH 1RG . . . B 2 -7.35 -3.476 4.521 1 0.33 ? CAH 1RG 130 A 1 
HETATM 16 C CAI 1RG . . . B 2 -8.601 -3.383 5.11 1 0.37 ? CAI 1RG 130 A 1 
HETATM 17 N NAJ 1RG . . . B 2 -8.984 -3.167 2.924 1 0.34 ? NAJ 1RG 130 A 1 
HETATM 18 S SAK 1RG . . . B 2 -8.881 -3.538 6.836 1 0.71 ? SAK 1RG 130 A 1 
HETATM 19 C CAL 1RG . . . B 2 -9.534 -3.278 4.137 1 0.33 ? CAL 1RG 130 A 1 
HETATM 20 C CAM 1RG . . . B 2 -10.85 -3.262 4.394 1 0.53 ? CAM 1RG 130 A 1 
HETATM 21 C CAS 1RG . . . B 2 -6.631 -2.14 4.613 1 0.41 ? CAS 1RG 130 A 1 
HETATM 22 O OAT 1RG . . . B 2 -11.656 -3.182 3.447 1 0.66 ? OAT 1RG 130 A 1 
HETATM 23 O OAU 1RG . . . B 2 -11.286 -3.332 5.558 1 0.67 ? OAU 1RG 130 A 1 
HETATM 24 N NAX 1RG . . . B 2 -12.64 -7.514 8.819 1 2.87 ? NAX 1RG 130 A 1 
HETATM 25 C CAY 1RG . . . B 2 -13.939 -7.294 9.143 1 2.84 ? CAY 1RG 130 A 1 
HETATM 26 C CAZ 1RG . . . B 2 -14.736 -8.397 9.441 1 3.47 ? CAZ 1RG 130 A 1 
HETATM 27 C CBA 1RG . . . B 2 -16.079 -8.226 9.764 1 3.58 ? CBA 1RG 130 A 1 
HETATM 28 C CBB 1RG . . . B 2 -16.632 -6.949 9.791 1 3.1 ? CBB 1RG 130 A 1 
HETATM 29 C CBC 1RG . . . B 2 -15.847 -5.849 9.499 1 2.54 ? CBC 1RG 130 A 1 
HETATM 30 C CBD 1RG . . . B 2 -14.509 -6.014 9.176 1 2.37 ? CBD 1RG 130 A 1 
HETATM 31 C CBE 1RG . . . B 2 -16.87 -9.335 10.047 1 4.28 ? CBE 1RG 130 A 1 
HETATM 32 O OBF 1RG . . . B 2 -18.094 -9.214 10.26 1 4.45 ? OBF 1RG 130 A 1 
HETATM 33 O OBG 1RG . . . B 2 -16.377 -10.481 10.092 1 4.82 ? OBG 1RG 130 A 1 
HETATM 34 H HN 1RG . . . B 2 -11.186 -7.548 6.332 1 2.79 ? HN 1RG 130 A 1 
HETATM 35 H HA 1RG . . . B 2 -10.108 -7.793 8.679 1 3.48 ? HA 1RG 130 A 1 
HETATM 36 H HB 1RG . . . B 2 -9.918 -4.954 8.894 1 2.05 ? HB 1RG 130 A 1 
HETATM 37 H HBA 1RG . . . B 2 -8.538 -6.101 8.905 1 2.8 ? HBA 1RG 130 A 1 
HETATM 38 H HD 1RG . . . B 2 -9.906 -5.857 5.074 1 2.78 ? HD 1RG 130 A 1 
HETATM 39 H HDA 1RG . . . B 2 -11.068 -5.205 6.285 1 2.19 ? HDA 1RG 130 A 1 
HETATM 40 H HG 1RG . . . B 2 -8.066 -5.766 6.693 1 1.91 ? HG 1RG 130 A 1 
HETATM 41 H HAB 1RG . . . B 2 -5.67 -3.734 2.373 1 0.17 ? HAB 1RG 130 A 1 
HETATM 42 H HAD 1RG . . . B 2 -7.91 -4.955 3.094 1 0.26 ? HAD 1RG 130 A 1 
HETATM 43 H HAE 1RG . . . B 2 -5.794 -4.308 0.21 1 0.19 ? HAE 1RG 130 A 1 
HETATM 44 H HAF 1RG . . . B 2 -7.297 -6.257 1.961 1 1.02 ? HAF 1RG 130 A 1 
HETATM 45 H HAFA 1RG . . . B 2 -5.548 -6.04 1.967 1 1.02 ? HAFA 1RG 130 A 1 
HETATM 46 H HAFB 1RG . . . B 2 -6.36 -6.642 0.523 1 1 ? HAFB 1RG 130 A 1 
HETATM 47 H HOAG 1RG . . . B 2 -8.583 -4.648 0.71 1 0.9 ? HOAG 1RG 130 A 1 
HETATM 48 H HAH 1RG . . . B 2 -6.763 -4.263 4.984 1 0.39 ? HAH 1RG 130 A 1 
HETATM 49 H HNAJ 1RG . . . B 2 -9.55 -3.687 2.274 1 0.48 ? HNAJ 1RG 130 A 1 
HETATM 50 H HAS 1RG . . . B 2 -5.585 -2.297 4.409 1 0.96 ? HAS 1RG 130 A 1 
HETATM 51 H HASA 1RG . . . B 2 -6.747 -1.737 5.609 1 1.12 ? HASA 1RG 130 A 1 
HETATM 52 H HASB 1RG . . . B 2 -7.044 -1.452 3.89 1 1.09 ? HASB 1RG 130 A 1 
HETATM 53 H HNAX 1RG . . . B 2 -12.287 -8.449 8.797 1 3.33 ? HNAX 1RG 130 A 1 
HETATM 54 H HAZ 1RG . . . B 2 -14.31 -9.389 9.422 1 3.96 ? HAZ 1RG 130 A 1 
HETATM 55 H HBB 1RG . . . B 2 -17.674 -6.816 10.041 1 3.29 ? HBB 1RG 130 A 1 
HETATM 56 H HBC 1RG . . . B 2 -16.276 -4.858 9.52 1 2.39 ? HBC 1RG 130 A 1 
HETATM 57 H HBD 1RG . . . B 2 -13.902 -5.151 8.947 1 2.06 ? HBD 1RG 130 A 1 
HETATM 58 H HAT2 1RG . . . B 2 -9.55 -7.73 6.445 1 3.29 ? HAT2 1RG 130 A 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    87 
_model_server_stats.query_time_ms           6987 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           58 
#