data_3ZH8
#
_model_server_result.job_id            nMfbPwSbLbQaDVi1MwdoDg 
_model_server_result.datetime_utc      '2024-10-25 20:23:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3zh8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":904}' 
#
_entry.id    3ZH8 
#
_exptl.entry_id    3ZH8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              126.904 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IODIDE ION' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3ZH8 
_cell.length_a            113.58 
_cell.length_b            113.58 
_cell.length_c            82.41 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ZH8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,K,L,FA 1 1 
B,M,N,O,P,Q,R,S,T,U,V,GA 2 1 
C,W,X,Y,Z,AA,BA,CA,DA,EA,HA 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 164 A SER 402 1_555 A N TPO 165 A TPO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C TPO 165 A TPO 403 1_555 A N PHE 166 A PHE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 A C LEU 316 A LEU 554 1_555 A N TPO 317 A TPO 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 A C TPO 317 A TPO 555 1_555 A N PRO 318 A PRO 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale5 B C SER 164 B SER 402 1_555 B N TPO 165 B TPO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale6 B C TPO 165 B TPO 403 1_555 B N PHE 166 B PHE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale7 B C LEU 316 B LEU 554 1_555 B N TPO 317 B TPO 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale8 B C TPO 317 B TPO 555 1_555 B N PRO 318 B PRO 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale9 C C SER 164 C SER 402 1_555 C N TPO 165 C TPO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale10 C C TPO 165 C TPO 403 1_555 C N PHE 166 C PHE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale11 C C LEU 316 C LEU 554 1_555 C N TPO 317 C TPO 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale12 C C TPO 317 C TPO 555 1_555 C N PRO 318 C PRO 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
#
_chem_comp.formula           'I -1' 
_chem_comp.formula_weight    126.904 
_chem_comp.id                IOD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IODIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3ZH8 
_atom_sites.fract_transf_matrix[1][1]    0.008804 
_atom_sites.fract_transf_matrix[1][2]    0.005083 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010166 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012134 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 IOD A 1 901 901 IOD IOD . 
E 2 IOD A 1 902 902 IOD IOD . 
F 2 IOD A 1 903 903 IOD IOD . 
G 2 IOD A 1 904 904 IOD IOD . 
H 3 CL A 1 912 912 CL CL . 
I 4 C58 A 1 1582 1582 C58 C58 . 
J 5 EDO A 1 1583 1583 EDO EDO . 
K 5 EDO A 1 1584 1584 EDO EDO . 
L 5 EDO A 1 1585 1585 EDO EDO . 
M 2 IOD B 1 901 901 IOD IOD . 
N 2 IOD B 1 902 902 IOD IOD . 
O 2 IOD B 1 903 903 IOD IOD . 
P 2 IOD B 1 904 904 IOD IOD . 
Q 3 CL B 1 912 912 CL CL . 
R 4 C58 B 1 1581 1581 C58 C58 . 
S 5 EDO B 1 1582 1582 EDO EDO . 
T 5 EDO B 1 1583 1583 EDO EDO . 
U 5 EDO B 1 1584 1584 EDO EDO . 
V 5 EDO B 1 1585 1585 EDO EDO . 
W 2 IOD C 1 901 901 IOD IOD . 
X 2 IOD C 1 902 902 IOD IOD . 
Y 2 IOD C 1 903 903 IOD IOD . 
Z 2 IOD C 1 904 904 IOD IOD . 
AA 3 CL C 1 912 912 CL CL . 
BA 4 C58 C 1 1580 1580 C58 C58 . 
CA 5 EDO C 1 1581 1581 EDO EDO . 
DA 5 EDO C 1 1582 1582 EDO EDO . 
EA 5 EDO C 1 1583 1583 EDO EDO . 
FA 6 HOH A 1 2001 2001 HOH HOH . 
FA 6 HOH A 2 2002 2002 HOH HOH . 
FA 6 HOH A 3 2003 2003 HOH HOH . 
FA 6 HOH A 4 2004 2004 HOH HOH . 
FA 6 HOH A 5 2005 2005 HOH HOH . 
FA 6 HOH A 6 2006 2006 HOH HOH . 
FA 6 HOH A 7 2007 2007 HOH HOH . 
FA 6 HOH A 8 2008 2008 HOH HOH . 
FA 6 HOH A 9 2009 2009 HOH HOH . 
FA 6 HOH A 10 2010 2010 HOH HOH . 
FA 6 HOH A 11 2011 2011 HOH HOH . 
FA 6 HOH A 12 2012 2012 HOH HOH . 
FA 6 HOH A 13 2013 2013 HOH HOH . 
FA 6 HOH A 14 2014 2014 HOH HOH . 
FA 6 HOH A 15 2015 2015 HOH HOH . 
FA 6 HOH A 16 2016 2016 HOH HOH . 
FA 6 HOH A 17 2017 2017 HOH HOH . 
FA 6 HOH A 18 2018 2018 HOH HOH . 
FA 6 HOH A 19 2019 2019 HOH HOH . 
FA 6 HOH A 20 2020 2020 HOH HOH . 
FA 6 HOH A 21 2021 2021 HOH HOH . 
FA 6 HOH A 22 2022 2022 HOH HOH . 
GA 6 HOH B 1 2001 2001 HOH HOH . 
GA 6 HOH B 2 2002 2002 HOH HOH . 
GA 6 HOH B 3 2003 2003 HOH HOH . 
GA 6 HOH B 4 2004 2004 HOH HOH . 
GA 6 HOH B 5 2005 2005 HOH HOH . 
GA 6 HOH B 6 2006 2006 HOH HOH . 
GA 6 HOH B 7 2007 2007 HOH HOH . 
GA 6 HOH B 8 2008 2008 HOH HOH . 
GA 6 HOH B 9 2009 2009 HOH HOH . 
GA 6 HOH B 10 2010 2010 HOH HOH . 
GA 6 HOH B 11 2011 2011 HOH HOH . 
GA 6 HOH B 12 2012 2012 HOH HOH . 
GA 6 HOH B 13 2013 2013 HOH HOH . 
GA 6 HOH B 14 2014 2014 HOH HOH . 
GA 6 HOH B 15 2015 2015 HOH HOH . 
GA 6 HOH B 16 2016 2016 HOH HOH . 
GA 6 HOH B 17 2017 2017 HOH HOH . 
GA 6 HOH B 18 2018 2018 HOH HOH . 
GA 6 HOH B 19 2019 2019 HOH HOH . 
GA 6 HOH B 20 2020 2020 HOH HOH . 
GA 6 HOH B 21 2021 2021 HOH HOH . 
GA 6 HOH B 22 2022 2022 HOH HOH . 
GA 6 HOH B 23 2023 2023 HOH HOH . 
GA 6 HOH B 24 2024 2024 HOH HOH . 
GA 6 HOH B 25 2025 2025 HOH HOH . 
GA 6 HOH B 26 2026 2026 HOH HOH . 
GA 6 HOH B 27 2027 2027 HOH HOH . 
GA 6 HOH B 28 2028 2028 HOH HOH . 
GA 6 HOH B 29 2029 2029 HOH HOH . 
HA 6 HOH C 1 2001 2001 HOH HOH . 
HA 6 HOH C 2 2002 2002 HOH HOH . 
HA 6 HOH C 3 2003 2003 HOH HOH . 
HA 6 HOH C 4 2004 2004 HOH HOH . 
HA 6 HOH C 5 2005 2005 HOH HOH . 
HA 6 HOH C 6 2006 2006 HOH HOH . 
HA 6 HOH C 7 2007 2007 HOH HOH . 
HA 6 HOH C 8 2008 2008 HOH HOH . 
HA 6 HOH C 9 2009 2009 HOH HOH . 
HA 6 HOH C 10 2010 2010 HOH HOH . 
HA 6 HOH C 11 2011 2011 HOH HOH . 
HA 6 HOH C 12 2012 2012 HOH HOH . 
HA 6 HOH C 13 2013 2013 HOH HOH . 
HA 6 HOH C 14 2014 2014 HOH HOH . 
HA 6 HOH C 15 2015 2015 HOH HOH . 
HA 6 HOH C 16 2016 2016 HOH HOH . 
HA 6 HOH C 17 2017 2017 HOH HOH . 
HA 6 HOH C 18 2018 2018 HOH HOH . 
HA 6 HOH C 19 2019 2019 HOH HOH . 
HA 6 HOH C 20 2020 2020 HOH HOH . 
HA 6 HOH C 21 2021 2021 HOH HOH . 
HA 6 HOH C 22 2022 2022 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           I 
_atom_site.label_atom_id         I 
_atom_site.label_comp_id         IOD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         P 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               30.721 
_atom_site.Cartn_y               29.709 
_atom_site.Cartn_z               45.268 
_atom_site.occupancy             0.61 
_atom_site.B_iso_or_equiv        58.6 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          I 
_atom_site.auth_comp_id          IOD 
_atom_site.auth_seq_id           904 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#