data_3ZHB
#
_model_server_result.job_id            Y2QcYSs3WsSbxUAkliInDw 
_model_server_result.datetime_utc      '2024-11-18 14:27:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3zhb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1307}' 
#
_entry.id    3ZHB 
#
_exptl.entry_id    3ZHB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.08 
_cell.angle_gamma         90 
_cell.entry_id            3ZHB 
_cell.length_a            205.79 
_cell.length_b            130.31 
_cell.length_c            77.7 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ZHB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     3ZHB 
_atom_sites.fract_transf_matrix[1][1]    0.004859 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001493 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007674 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013464 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 1307 1307 NAP NAP . 
F 2 NAP B 1 1307 1307 NAP NAP . 
G 2 NAP C 1 1307 1307 NAP NAP . 
H 2 NAP D 1 1307 1307 NAP NAP . 
I 3 HOH A 1 2001 2001 HOH HOH . 
I 3 HOH A 2 2002 2002 HOH HOH . 
I 3 HOH A 3 2003 2003 HOH HOH . 
I 3 HOH A 4 2004 2004 HOH HOH . 
I 3 HOH A 5 2005 2005 HOH HOH . 
I 3 HOH A 6 2006 2006 HOH HOH . 
I 3 HOH A 7 2007 2007 HOH HOH . 
I 3 HOH A 8 2008 2008 HOH HOH . 
I 3 HOH A 9 2009 2009 HOH HOH . 
I 3 HOH A 10 2010 2010 HOH HOH . 
I 3 HOH A 11 2011 2011 HOH HOH . 
I 3 HOH A 12 2012 2012 HOH HOH . 
I 3 HOH A 13 2013 2013 HOH HOH . 
I 3 HOH A 14 2014 2014 HOH HOH . 
I 3 HOH A 15 2015 2015 HOH HOH . 
I 3 HOH A 16 2016 2016 HOH HOH . 
I 3 HOH A 17 2017 2017 HOH HOH . 
I 3 HOH A 18 2018 2018 HOH HOH . 
I 3 HOH A 19 2019 2019 HOH HOH . 
I 3 HOH A 20 2020 2020 HOH HOH . 
I 3 HOH A 21 2021 2021 HOH HOH . 
I 3 HOH A 22 2022 2022 HOH HOH . 
I 3 HOH A 23 2023 2023 HOH HOH . 
I 3 HOH A 24 2024 2024 HOH HOH . 
I 3 HOH A 25 2025 2025 HOH HOH . 
I 3 HOH A 26 2026 2026 HOH HOH . 
I 3 HOH A 27 2027 2027 HOH HOH . 
I 3 HOH A 28 2028 2028 HOH HOH . 
J 3 HOH B 1 2001 2001 HOH HOH . 
J 3 HOH B 2 2002 2002 HOH HOH . 
J 3 HOH B 3 2003 2003 HOH HOH . 
J 3 HOH B 4 2004 2004 HOH HOH . 
J 3 HOH B 5 2005 2005 HOH HOH . 
J 3 HOH B 6 2006 2006 HOH HOH . 
J 3 HOH B 7 2007 2007 HOH HOH . 
J 3 HOH B 8 2008 2008 HOH HOH . 
J 3 HOH B 9 2009 2009 HOH HOH . 
J 3 HOH B 10 2010 2010 HOH HOH . 
J 3 HOH B 11 2011 2011 HOH HOH . 
J 3 HOH B 12 2012 2012 HOH HOH . 
J 3 HOH B 13 2013 2013 HOH HOH . 
J 3 HOH B 14 2014 2014 HOH HOH . 
J 3 HOH B 15 2015 2015 HOH HOH . 
J 3 HOH B 16 2016 2016 HOH HOH . 
J 3 HOH B 17 2017 2017 HOH HOH . 
J 3 HOH B 18 2018 2018 HOH HOH . 
J 3 HOH B 19 2019 2019 HOH HOH . 
J 3 HOH B 20 2020 2020 HOH HOH . 
J 3 HOH B 21 2021 2021 HOH HOH . 
K 3 HOH C 1 2001 2001 HOH HOH . 
K 3 HOH C 2 2002 2002 HOH HOH . 
K 3 HOH C 3 2003 2003 HOH HOH . 
K 3 HOH C 4 2004 2004 HOH HOH . 
K 3 HOH C 5 2005 2005 HOH HOH . 
K 3 HOH C 6 2006 2006 HOH HOH . 
K 3 HOH C 7 2007 2007 HOH HOH . 
K 3 HOH C 8 2008 2008 HOH HOH . 
K 3 HOH C 9 2009 2009 HOH HOH . 
K 3 HOH C 10 2010 2010 HOH HOH . 
K 3 HOH C 11 2011 2011 HOH HOH . 
K 3 HOH C 12 2012 2012 HOH HOH . 
K 3 HOH C 13 2013 2013 HOH HOH . 
K 3 HOH C 14 2014 2014 HOH HOH . 
K 3 HOH C 15 2015 2015 HOH HOH . 
K 3 HOH C 16 2016 2016 HOH HOH . 
K 3 HOH C 17 2017 2017 HOH HOH . 
K 3 HOH C 18 2018 2018 HOH HOH . 
K 3 HOH C 19 2019 2019 HOH HOH . 
L 3 HOH D 1 2001 2001 HOH HOH . 
L 3 HOH D 2 2002 2002 HOH HOH . 
L 3 HOH D 3 2003 2003 HOH HOH . 
L 3 HOH D 4 2004 2004 HOH HOH . 
L 3 HOH D 5 2005 2005 HOH HOH . 
L 3 HOH D 6 2006 2006 HOH HOH . 
L 3 HOH D 7 2007 2007 HOH HOH . 
L 3 HOH D 8 2008 2008 HOH HOH . 
L 3 HOH D 9 2009 2009 HOH HOH . 
L 3 HOH D 10 2010 2010 HOH HOH . 
L 3 HOH D 11 2011 2011 HOH HOH . 
L 3 HOH D 12 2012 2012 HOH HOH . 
L 3 HOH D 13 2013 2013 HOH HOH . 
L 3 HOH D 14 2014 2014 HOH HOH . 
L 3 HOH D 15 2015 2015 HOH HOH . 
L 3 HOH D 16 2016 2016 HOH HOH . 
L 3 HOH D 17 2017 2017 HOH HOH . 
L 3 HOH D 18 2018 2018 HOH HOH . 
L 3 HOH D 19 2019 2019 HOH HOH . 
L 3 HOH D 20 2020 2020 HOH HOH . 
L 3 HOH D 21 2021 2021 HOH HOH . 
L 3 HOH D 22 2022 2022 HOH HOH . 
L 3 HOH D 23 2023 2023 HOH HOH . 
L 3 HOH D 24 2024 2024 HOH HOH . 
L 3 HOH D 25 2025 2025 HOH HOH . 
L 3 HOH D 26 2026 2026 HOH HOH . 
L 3 HOH D 27 2027 2027 HOH HOH . 
L 3 HOH D 28 2028 2028 HOH HOH . 
L 3 HOH D 29 2029 2029 HOH HOH . 
L 3 HOH D 30 2030 2030 HOH HOH . 
L 3 HOH D 31 2031 2031 HOH HOH . 
L 3 HOH D 32 2032 2032 HOH HOH . 
L 3 HOH D 33 2033 2033 HOH HOH . 
L 3 HOH D 34 2034 2034 HOH HOH . 
L 3 HOH D 35 2035 2035 HOH HOH . 
L 3 HOH D 36 2036 2036 HOH HOH . 
L 3 HOH D 37 2037 2037 HOH HOH . 
L 3 HOH D 38 2038 2038 HOH HOH . 
L 3 HOH D 39 2039 2039 HOH HOH . 
L 3 HOH D 40 2040 2040 HOH HOH . 
L 3 HOH D 41 2041 2041 HOH HOH . 
L 3 HOH D 42 2042 2042 HOH HOH . 
L 3 HOH D 43 2043 2043 HOH HOH . 
L 3 HOH D 44 2044 2044 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . E 2 -29.764 -37.377 21.962 1 71.33 ? PA NAP 1307 A 1 
HETATM 2 O O1A NAP . . . E 2 -30.056 -37.119 23.467 1 58.35 ? O1A NAP 1307 A 1 
HETATM 3 O O2A NAP . . . E 2 -30.834 -37.48 20.885 1 64.63 ? O2A NAP 1307 A 1 
HETATM 4 O O5B NAP . . . E 2 -28.713 -36.293 21.444 1 61.88 ? O5B NAP 1307 A 1 
HETATM 5 C C5B NAP . . . E 2 -28.735 -36.288 20.036 1 63.94 ? C5B NAP 1307 A 1 
HETATM 6 C C4B NAP . . . E 2 -27.88 -35.185 19.522 1 64.91 ? C4B NAP 1307 A 1 
HETATM 7 O O4B NAP . . . E 2 -28.366 -35.105 18.202 1 60.58 ? O4B NAP 1307 A 1 
HETATM 8 C C3B NAP . . . E 2 -28.093 -33.815 20.158 1 67.31 ? C3B NAP 1307 A 1 
HETATM 9 O O3B NAP . . . E 2 -26.863 -33.16 20.505 1 62.63 ? O3B NAP 1307 A 1 
HETATM 10 C C2B NAP . . . E 2 -28.809 -33.062 19.055 1 68.07 ? C2B NAP 1307 A 1 
HETATM 11 O O2B NAP . . . E 2 -28.616 -31.64 19.111 1 77.02 ? O2B NAP 1307 A 1 
HETATM 12 C C1B NAP . . . E 2 -28.212 -33.752 17.861 1 59.71 ? C1B NAP 1307 A 1 
HETATM 13 N N9A NAP . . . E 2 -28.887 -33.619 16.583 1 53.44 ? N9A NAP 1307 A 1 
HETATM 14 C C8A NAP . . . E 2 -29.893 -34.394 16.097 1 50.12 ? C8A NAP 1307 A 1 
HETATM 15 N N7A NAP . . . E 2 -30.248 -33.977 14.843 1 47.7 ? N7A NAP 1307 A 1 
HETATM 16 C C5A NAP . . . E 2 -29.41 -32.95 14.569 1 47.94 ? C5A NAP 1307 A 1 
HETATM 17 C C6A NAP . . . E 2 -29.223 -32.062 13.446 1 46.08 ? C6A NAP 1307 A 1 
HETATM 18 N N6A NAP . . . E 2 -30.038 -32.308 12.443 1 50.07 ? N6A NAP 1307 A 1 
HETATM 19 N N1A NAP . . . E 2 -28.286 -31.091 13.445 1 48.04 ? N1A NAP 1307 A 1 
HETATM 20 C C2A NAP . . . E 2 -27.498 -30.948 14.55 1 53.2 ? C2A NAP 1307 A 1 
HETATM 21 N N3A NAP . . . E 2 -27.598 -31.721 15.661 1 52.63 ? N3A NAP 1307 A 1 
HETATM 22 C C4A NAP . . . E 2 -28.514 -32.719 15.696 1 49.01 ? C4A NAP 1307 A 1 
HETATM 23 O O3 NAP . . . E 2 -28.994 -38.789 21.694 1 59.13 ? O3 NAP 1307 A 1 
HETATM 24 P PN NAP . . . E 2 -27.643 -39.227 22.461 1 54.61 ? PN NAP 1307 A 1 
HETATM 25 O O1N NAP . . . E 2 -28.103 -40.261 23.452 1 58.07 ? O1N NAP 1307 A 1 
HETATM 26 O O2N NAP . . . E 2 -26.652 -38.141 22.937 1 48.16 ? O2N NAP 1307 A 1 
HETATM 27 O O5D NAP . . . E 2 -27.163 -39.85 21.075 1 62.49 ? O5D NAP 1307 A 1 
HETATM 28 C C5D NAP . . . E 2 -25.927 -39.576 20.378 1 62.24 ? C5D NAP 1307 A 1 
HETATM 29 C C4D NAP . . . E 2 -25.382 -40.91 19.84 1 58.42 ? C4D NAP 1307 A 1 
HETATM 30 O O4D NAP . . . E 2 -24.949 -41.729 20.941 1 57.69 ? O4D NAP 1307 A 1 
HETATM 31 C C3D NAP . . . E 2 -26.477 -41.682 19.117 1 52.86 ? C3D NAP 1307 A 1 
HETATM 32 O O3D NAP . . . E 2 -26.019 -42.205 17.893 1 50.46 ? O3D NAP 1307 A 1 
HETATM 33 C C2D NAP . . . E 2 -26.843 -42.774 20.069 1 51.67 ? C2D NAP 1307 A 1 
HETATM 34 O O2D NAP . . . E 2 -27.328 -43.9 19.356 1 58.31 ? O2D NAP 1307 A 1 
HETATM 35 C C1D NAP . . . E 2 -25.504 -43.006 20.718 1 59.63 ? C1D NAP 1307 A 1 
HETATM 36 N N1N NAP . . . E 2 -25.618 -43.802 21.916 1 65.01 ? N1N NAP 1307 A 1 
HETATM 37 C C2N NAP . . . E 2 -26.393 -43.377 22.9 1 71.55 ? C2N NAP 1307 A 1 
HETATM 38 C C3N NAP . . . E 2 -26.535 -44.144 24.054 1 71.83 ? C3N NAP 1307 A 1 
HETATM 39 C C7N NAP . . . E 2 -27.419 -43.661 25.155 1 65.96 ? C7N NAP 1307 A 1 
HETATM 40 O O7N NAP . . . E 2 -28.041 -44.525 25.765 1 67.26 ? O7N NAP 1307 A 1 
HETATM 41 N N7N NAP . . . E 2 -27.489 -42.34 25.394 1 57.47 ? N7N NAP 1307 A 1 
HETATM 42 C C4N NAP . . . E 2 -25.871 -45.358 24.169 1 68.25 ? C4N NAP 1307 A 1 
HETATM 43 C C5N NAP . . . E 2 -25.077 -45.772 23.118 1 65.22 ? C5N NAP 1307 A 1 
HETATM 44 C C6N NAP . . . E 2 -24.961 -44.964 21.997 1 63.8 ? C6N NAP 1307 A 1 
HETATM 45 P P2B NAP . . . E 2 -29.891 -30.765 19.667 1 70.57 ? P2B NAP 1307 A 1 
HETATM 46 O O1X NAP . . . E 2 -31.167 -31.382 19.106 1 43.8 ? O1X NAP 1307 A 1 
HETATM 47 O O2X NAP . . . E 2 -29.805 -31.013 21.133 1 56.5 ? O2X NAP 1307 A 1 
HETATM 48 O O3X NAP . . . E 2 -29.469 -29.347 19.256 1 66.61 ? O3X NAP 1307 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           48 
#