data_3ZIM # _model_server_result.job_id wKROZfBpYCxU3y60WTGIKw _model_server_result.datetime_utc '2024-11-04 22:49:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zim # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2047}' # _entry.id 3ZIM # _exptl.entry_id 3ZIM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 573.709 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-[4-[[2-(1H-indazol-4-yl)-4-morpholin-4-yl-thieno[3,2-d]pyrimidin-6-yl]methyl]piperazin-1-yl]-6-methyl-hept-5-ene-1,4- dione' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ZIM _cell.length_a 59.34 _cell.length_b 135.027 _cell.length_c 142.921 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZIM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 756 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 862 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C2 _struct_conn.ptnr2_label_comp_id KKR _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id KKR _struct_conn.ptnr2_auth_seq_id 2047 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.747 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C30 H35 N7 O3 S' _chem_comp.formula_weight 573.709 _chem_comp.id KKR _chem_comp.mon_nstd_flag . _chem_comp.name '1-[4-[[2-(1H-indazol-4-yl)-4-morpholin-4-yl-thieno[3,2-d]pyrimidin-6-yl]methyl]piperazin-1-yl]-6-methyl-hept-5-ene-1,4- dione' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-[4-[[2-(1H-indazol-4-yl)-4-morpholinthieno[3,2-d]pyrimidin-6-yl]methyl]piperazin-1-yl]-6-methyl-hept-5-ene-1,4-dione # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 KKR sing 173 n n C2 C3 KKR sing 174 n n C2 C4 KKR doub 175 n n C4 C5 KKR sing 176 n n C5 O6 KKR doub 177 n n C5 C7 KKR sing 178 n n C7 C8 KKR sing 179 n n C8 C9 KKR sing 180 n n C9 O10 KKR doub 181 n n C9 N11 KKR sing 182 n n N11 C12 KKR sing 183 n n N11 C16 KKR sing 184 n n C12 C13 KKR sing 185 n n C13 N14 KKR sing 186 n n N14 C15 KKR sing 187 n n N14 C17 KKR sing 188 n n C15 C16 KKR sing 189 n n C17 C18 KKR sing 190 n n C18 C19 KKR doub 191 n y C18 S26 KKR sing 192 n y C19 C20 KKR sing 193 n y C20 N21 KKR sing 194 n y C20 C25 KKR doub 195 n y N21 C22 KKR doub 196 n y C22 N23 KKR sing 197 n y C22 C33 KKR sing 198 n n N23 C24 KKR doub 199 n y C24 C25 KKR sing 200 n y C24 N27 KKR sing 201 n n C25 S26 KKR sing 202 n y N27 C28 KKR sing 203 n n N27 C32 KKR sing 204 n n C28 C29 KKR sing 205 n n C29 O30 KKR sing 206 n n O30 C31 KKR sing 207 n n C31 C32 KKR sing 208 n n C33 C34 KKR sing 209 n y C33 C41 KKR doub 210 n y C34 C35 KKR doub 211 n y C35 C36 KKR sing 212 n y C36 C37 KKR doub 213 n y C37 N38 KKR sing 214 n y C37 C41 KKR sing 215 n y N38 N39 KKR sing 216 n y N39 C40 KKR doub 217 n y C40 C41 KKR sing 218 n y C1 H11C KKR sing 219 n n C1 H12C KKR sing 220 n n C1 H13C KKR sing 221 n n C3 H31C KKR sing 222 n n C3 H32C KKR sing 223 n n C3 H33C KKR sing 224 n n C4 H4C KKR sing 225 n n C7 H71C KKR sing 226 n n C7 H72C KKR sing 227 n n C8 H81C KKR sing 228 n n C8 H82C KKR sing 229 n n C12 H121 KKR sing 230 n n C12 H122 KKR sing 231 n n C16 H161 KKR sing 232 n n C16 H162 KKR sing 233 n n C13 H131 KKR sing 234 n n C13 H132 KKR sing 235 n n C15 H151 KKR sing 236 n n C15 H152 KKR sing 237 n n C17 H171 KKR sing 238 n n C17 H172 KKR sing 239 n n C19 H19 KKR sing 240 n n C28 H281 KKR sing 241 n n C28 H282 KKR sing 242 n n C32 H321 KKR sing 243 n n C32 H322 KKR sing 244 n n C29 H291 KKR sing 245 n n C29 H292 KKR sing 246 n n C31 H311 KKR sing 247 n n C31 H312 KKR sing 248 n n C34 H34 KKR sing 249 n n C35 H35 KKR sing 250 n n C36 H36 KKR sing 251 n n N38 H38 KKR sing 252 n n C40 H40 KKR sing 253 n n # _atom_sites.entry_id 3ZIM _atom_sites.fract_transf_matrix[1][1] 0.016852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007406 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KKR A 1 2047 2047 KKR KKR . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KKR . . . B 2 -32.938 13.867 29.817 1 155.08 ? C1 KKR 2047 A 1 HETATM 2 C C2 KKR . . . B 2 -31.986 14.148 28.681 1 155.69 ? C2 KKR 2047 A 1 HETATM 3 C C3 KKR . . . B 2 -32.218 13.158 27.567 1 162.73 ? C3 KKR 2047 A 1 HETATM 4 C C4 KKR . . . B 2 -30.531 14.124 29.146 1 155.1 ? C4 KKR 2047 A 1 HETATM 5 C C5 KKR . . . B 2 -30.117 12.824 29.689 1 166.3 ? C5 KKR 2047 A 1 HETATM 6 O O6 KKR . . . B 2 -30.437 12.492 30.812 1 183.3 ? O6 KKR 2047 A 1 HETATM 7 C C7 KKR . . . B 2 -29.253 11.905 28.869 1 169.43 ? C7 KKR 2047 A 1 HETATM 8 C C8 KKR . . . B 2 -27.803 12.154 29.293 1 161.8 ? C8 KKR 2047 A 1 HETATM 9 C C9 KKR . . . B 2 -26.783 11.429 28.437 1 161.46 ? C9 KKR 2047 A 1 HETATM 10 O O10 KKR . . . B 2 -27.179 10.697 27.549 1 154.11 ? O10 KKR 2047 A 1 HETATM 11 N N11 KKR . . . B 2 -25.44 11.583 28.658 1 163.15 ? N11 KKR 2047 A 1 HETATM 12 C C12 KKR . . . B 2 -24.88 12.465 29.71 1 152.98 ? C12 KKR 2047 A 1 HETATM 13 C C13 KKR . . . B 2 -23.956 11.646 30.612 1 141.25 ? C13 KKR 2047 A 1 HETATM 14 N N14 KKR . . . B 2 -22.853 11.133 29.786 1 133.55 ? N14 KKR 2047 A 1 HETATM 15 C C15 KKR . . . B 2 -23.37 10.211 28.749 1 140.56 ? C15 KKR 2047 A 1 HETATM 16 C C16 KKR . . . B 2 -24.408 10.899 27.837 1 149.7 ? C16 KKR 2047 A 1 HETATM 17 C C17 KKR . . . B 2 -21.836 10.504 30.642 1 118.69 ? C17 KKR 2047 A 1 HETATM 18 C C18 KKR . . . B 2 -20.481 10.492 29.985 1 110.57 ? C18 KKR 2047 A 1 HETATM 19 C C19 KKR . . . B 2 -20.066 9.545 29.166 1 103.19 ? C19 KKR 2047 A 1 HETATM 20 C C20 KKR . . . B 2 -18.78 9.694 28.679 1 102.26 ? C20 KKR 2047 A 1 HETATM 21 N N21 KKR . . . B 2 -18.123 8.84 27.816 1 100.11 ? N21 KKR 2047 A 1 HETATM 22 C C22 KKR . . . B 2 -16.865 9.107 27.378 1 98.26 ? C22 KKR 2047 A 1 HETATM 23 N N23 KKR . . . B 2 -16.26 10.211 27.829 1 94.02 ? N23 KKR 2047 A 1 HETATM 24 C C24 KKR . . . B 2 -16.787 11.086 28.71 1 92.42 ? C24 KKR 2047 A 1 HETATM 25 C C25 KKR . . . B 2 -18.124 10.83 29.157 1 99.96 ? C25 KKR 2047 A 1 HETATM 26 S S26 KKR . . . B 2 -19.258 11.648 30.231 1 101.5 ? S26 KKR 2047 A 1 HETATM 27 N N27 KKR . . . B 2 -16.024 12.175 29.165 1 87.4 ? N27 KKR 2047 A 1 HETATM 28 C C28 KKR . . . B 2 -16.62 13.389 29.794 1 92.05 ? C28 KKR 2047 A 1 HETATM 29 C C29 KKR . . . B 2 -15.755 14.663 29.802 1 85.56 ? C29 KKR 2047 A 1 HETATM 30 O O30 KKR . . . B 2 -14.376 14.348 29.852 1 84.86 ? O30 KKR 2047 A 1 HETATM 31 C C31 KKR . . . B 2 -13.968 13.473 28.805 1 87.63 ? C31 KKR 2047 A 1 HETATM 32 C C32 KKR . . . B 2 -14.544 12.1 29.157 1 85.1 ? C32 KKR 2047 A 1 HETATM 33 C C33 KKR . . . B 2 -16.208 8.179 26.41 1 103.9 ? C33 KKR 2047 A 1 HETATM 34 C C34 KKR . . . B 2 -16.833 6.995 25.966 1 106.8 ? C34 KKR 2047 A 1 HETATM 35 C C35 KKR . . . B 2 -16.219 6.124 25.076 1 110.62 ? C35 KKR 2047 A 1 HETATM 36 C C36 KKR . . . B 2 -15.001 6.385 24.533 1 107.07 ? C36 KKR 2047 A 1 HETATM 37 C C37 KKR . . . B 2 -14.317 7.55 24.882 1 100.61 ? C37 KKR 2047 A 1 HETATM 38 N N38 KKR . . . B 2 -13.147 8.056 24.516 1 107.53 ? N38 KKR 2047 A 1 HETATM 39 N N39 KKR . . . B 2 -12.946 9.172 25.107 1 110.18 ? N39 KKR 2047 A 1 HETATM 40 C C40 KKR . . . B 2 -13.941 9.479 25.911 1 100.38 ? C40 KKR 2047 A 1 HETATM 41 C C41 KKR . . . B 2 -14.884 8.46 25.83 1 100.63 ? C41 KKR 2047 A 1 # _model_server_stats.io_time_ms 119 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #