data_3ZJ8
#
_model_server_result.job_id            r4SxGLTibklntla1b8okxA 
_model_server_result.datetime_utc      '2025-02-26 13:10:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3zj8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    3ZJ8 
#
_exptl.entry_id    3ZJ8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              332.19 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1R,2S,3S,4R,5R)-4-[(4-bromophenyl)methylamino]-5-(hydroxymethyl)cyclopentane-1,2,3-triol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3ZJ8 
_cell.length_a            159.107 
_cell.length_b            159.107 
_cell.length_c            102.995 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ZJ8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        90 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 4 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C13 H18 Br N O4' 
_chem_comp.formula_weight    332.19 
_chem_comp.id                LR1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1R,2S,3S,4R,5R)-4-[(4-bromophenyl)methylamino]-5-(hydroxymethyl)cyclopentane-1,2,3-triol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAH CAF LR1 sing 194 n y 
CAH CAN LR1 doub 195 n y 
CAF CAM LR1 doub 196 n y 
CAM BR LR1 sing 197 n n 
CAM CAG LR1 sing 198 n y 
CAG CAI LR1 doub 199 n y 
CAI CAN LR1 sing 200 n y 
CAN CAK LR1 sing 201 n n 
CAK NAL LR1 sing 202 n n 
NAL CAS LR1 sing 203 n n 
CAS CAQ LR1 sing 204 n n 
CAS CAR LR1 sing 205 n n 
CAQ OAD LR1 sing 206 n n 
CAQ CAO LR1 sing 207 n n 
CAO OAB LR1 sing 208 n n 
CAO CAP LR1 sing 209 n n 
CAP OAC LR1 sing 210 n n 
CAP CAR LR1 sing 211 n n 
CAR CAJ LR1 sing 212 n n 
CAJ OAA LR1 sing 213 n n 
CAH HAH LR1 sing 214 n n 
CAF HAF LR1 sing 215 n n 
CAG HAG LR1 sing 216 n n 
CAI HAI LR1 sing 217 n n 
CAK HAK1 LR1 sing 218 n n 
CAK HAK2 LR1 sing 219 n n 
NAL HAL LR1 sing 220 n n 
CAS HAS LR1 sing 221 n n 
CAQ HAQ LR1 sing 222 n n 
CAR HAR LR1 sing 223 n n 
OAD HAD LR1 sing 224 n n 
CAO HAO LR1 sing 225 n n 
OAB HAB LR1 sing 226 n n 
CAP HAP LR1 sing 227 n n 
OAC HAC LR1 sing 228 n n 
CAJ HAJ1 LR1 sing 229 n n 
CAJ HAJ2 LR1 sing 230 n n 
OAA HAA LR1 sing 231 n n 
#
_atom_sites.entry_id                     3ZJ8 
_atom_sites.fract_transf_matrix[1][1]    0.006285 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006285 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009709 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 LR1 A 1 1001 1001 LR1 LR1 . 
D 2 LR1 B 1 1001 1001 LR1 LR1 . 
E 3 HOH A 1 2001 2001 HOH HOH . 
E 3 HOH A 2 2002 2002 HOH HOH . 
E 3 HOH A 3 2003 2003 HOH HOH . 
E 3 HOH A 4 2004 2004 HOH HOH . 
E 3 HOH A 5 2005 2005 HOH HOH . 
F 3 HOH B 1 2001 2001 HOH HOH . 
F 3 HOH B 2 2002 2002 HOH HOH . 
F 3 HOH B 3 2003 2003 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAH LR1 . . . D 2 -50.366 -33.134 27.829 1 58.61 ? CAH LR1 1001 B 1 
HETATM 2 C CAF LR1 . . . D 2 -49.407 -34.064 27.401 1 57.49 ? CAF LR1 1001 B 1 
HETATM 3 C CAM LR1 . . . D 2 -48.035 -33.755 27.448 1 56.92 ? CAM LR1 1001 B 1 
HETATM 4 BR BR LR1 . . . D 2 -46.693 -35.062 26.888 0.61 64.32 ? BR LR1 1001 B 1 
HETATM 5 C CAG LR1 . . . D 2 -47.62 -32.507 27.92 1 50.54 ? CAG LR1 1001 B 1 
HETATM 6 C CAI LR1 . . . D 2 -48.57 -31.572 28.337 1 49.28 ? CAI LR1 1001 B 1 
HETATM 7 C CAN LR1 . . . D 2 -49.936 -31.873 28.279 1 56.09 ? CAN LR1 1001 B 1 
HETATM 8 C CAK LR1 . . . D 2 -50.872 -30.927 28.719 1 55.09 ? CAK LR1 1001 B 1 
HETATM 9 N NAL LR1 . . . D 2 -51.185 -29.824 27.795 1 51.01 ? NAL LR1 1001 B 1 
HETATM 10 C CAS LR1 . . . D 2 -52.358 -29.085 28.304 1 49.26 ? CAS LR1 1001 B 1 
HETATM 11 C CAQ LR1 . . . D 2 -52.355 -27.625 27.795 1 49.26 ? CAQ LR1 1001 B 1 
HETATM 12 O OAD LR1 . . . D 2 -52.434 -26.703 28.866 1 50.02 ? OAD LR1 1001 B 1 
HETATM 13 C CAO LR1 . . . D 2 -53.625 -27.468 26.989 1 48.97 ? CAO LR1 1001 B 1 
HETATM 14 O OAB LR1 . . . D 2 -53.43 -26.448 26.013 1 45.89 ? OAB LR1 1001 B 1 
HETATM 15 C CAP LR1 . . . D 2 -53.724 -28.867 26.404 1 51.33 ? CAP LR1 1001 B 1 
HETATM 16 O OAC LR1 . . . D 2 -54.985 -29.122 25.816 1 51.62 ? OAC LR1 1001 B 1 
HETATM 17 C CAR LR1 . . . D 2 -53.661 -29.623 27.724 1 52.16 ? CAR LR1 1001 B 1 
HETATM 18 C CAJ LR1 . . . D 2 -53.632 -31.146 27.531 1 52.01 ? CAJ LR1 1001 B 1 
HETATM 19 O OAA LR1 . . . D 2 -53.747 -31.468 26.153 1 52.19 ? OAA LR1 1001 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           19 
#