data_3ZJZ # _model_server_result.job_id LqHE1iMvaxItFuzZEy-TqQ _model_server_result.datetime_utc '2025-03-26 14:28:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zjz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1200}' # _entry.id 3ZJZ # _exptl.entry_id 3ZJZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 546.646 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DODECAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ZJZ _cell.length_a 80.15 _cell.length_b 334.38 _cell.length_c 80.21 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZJZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,Q,R 1 1,2 C,D,L,M,N,O,P,S,T 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -80.15 0 40.105 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 K N N ? 3 M N N # _chem_comp.formula 'C24 H50 O13' _chem_comp.formula_weight 546.646 _chem_comp.id 12P _chem_comp.mon_nstd_flag . _chem_comp.name 'DODECAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O37 C36 12P sing 1 n n O37 H37 12P sing 2 n n C36 C35 12P sing 3 n n C36 H361 12P sing 4 n n C36 H362 12P sing 5 n n C35 O34 12P sing 6 n n C35 H351 12P sing 7 n n C35 H352 12P sing 8 n n O34 C33 12P sing 9 n n C33 C32 12P sing 10 n n C33 H331 12P sing 11 n n C33 H332 12P sing 12 n n C32 O31 12P sing 13 n n C32 H321 12P sing 14 n n C32 H322 12P sing 15 n n O31 C30 12P sing 16 n n C30 C29 12P sing 17 n n C30 H301 12P sing 18 n n C30 H302 12P sing 19 n n C29 O28 12P sing 20 n n C29 H291 12P sing 21 n n C29 H292 12P sing 22 n n O28 C27 12P sing 23 n n C27 C26 12P sing 24 n n C27 H271 12P sing 25 n n C27 H272 12P sing 26 n n C26 O25 12P sing 27 n n C26 H261 12P sing 28 n n C26 H262 12P sing 29 n n O25 C24 12P sing 30 n n C24 C23 12P sing 31 n n C24 H241 12P sing 32 n n C24 H242 12P sing 33 n n C23 O22 12P sing 34 n n C23 H231 12P sing 35 n n C23 H232 12P sing 36 n n O22 C21 12P sing 37 n n C21 C20 12P sing 38 n n C21 H211 12P sing 39 n n C21 H212 12P sing 40 n n C20 O19 12P sing 41 n n C20 H201 12P sing 42 n n C20 H202 12P sing 43 n n O19 C18 12P sing 44 n n C18 C17 12P sing 45 n n C18 H181 12P sing 46 n n C18 H182 12P sing 47 n n C17 O16 12P sing 48 n n C17 H171 12P sing 49 n n C17 H172 12P sing 50 n n O16 C15 12P sing 51 n n C15 C14 12P sing 52 n n C15 H151 12P sing 53 n n C15 H152 12P sing 54 n n C14 O13 12P sing 55 n n C14 H141 12P sing 56 n n C14 H142 12P sing 57 n n O13 C12 12P sing 58 n n C12 C11 12P sing 59 n n C12 H121 12P sing 60 n n C12 H122 12P sing 61 n n C11 O10 12P sing 62 n n C11 H111 12P sing 63 n n C11 H112 12P sing 64 n n O10 C9 12P sing 65 n n C9 C8 12P sing 66 n n C9 H91 12P sing 67 n n C9 H92 12P sing 68 n n C8 O7 12P sing 69 n n C8 H81 12P sing 70 n n C8 H82 12P sing 71 n n O7 C6 12P sing 72 n n C6 C5 12P sing 73 n n C6 H61 12P sing 74 n n C6 H62 12P sing 75 n n C5 O4 12P sing 76 n n C5 H51 12P sing 77 n n C5 H52 12P sing 78 n n O4 C3 12P sing 79 n n C3 C2 12P sing 80 n n C3 H31 12P sing 81 n n C3 H32 12P sing 82 n n C2 O1 12P sing 83 n n C2 H21 12P sing 84 n n C2 H22 12P sing 85 n n O1 HO1 12P sing 86 n n # _atom_sites.entry_id 3ZJZ _atom_sites.fract_transf_matrix[1][1] 0.012477 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002991 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 2CV A 1 1100 1100 2CV 2CV . F 3 12P A 1 1200 1200 12P 12P . G 4 NA A 1 1400 1400 NA NA . H 4 NA A 1 1401 1401 NA NA . I 4 NA A 1 1402 1402 NA NA . J 2 2CV B 1 1100 1100 2CV 2CV . K 3 12P B 1 1200 1200 12P 12P . L 2 2CV C 1 1100 1100 2CV 2CV . M 3 12P C 1 1200 1200 12P 12P . N 4 NA C 1 1400 1400 NA NA . O 4 NA C 1 1401 1401 NA NA . P 2 2CV D 1 1100 1100 2CV 2CV . Q 5 HOH A 1 3001 3001 HOH HOH . Q 5 HOH A 2 3002 3002 HOH HOH . Q 5 HOH A 3 3003 3003 HOH HOH . Q 5 HOH A 4 3004 3004 HOH HOH . Q 5 HOH A 5 3005 3005 HOH HOH . Q 5 HOH A 6 3006 3006 HOH HOH . Q 5 HOH A 7 3007 3007 HOH HOH . Q 5 HOH A 8 3008 3008 HOH HOH . Q 5 HOH A 9 3009 3009 HOH HOH . Q 5 HOH A 10 3010 3010 HOH HOH . Q 5 HOH A 11 3011 3011 HOH HOH . Q 5 HOH A 12 3012 3012 HOH HOH . Q 5 HOH A 13 3013 3013 HOH HOH . Q 5 HOH A 14 3014 3014 HOH HOH . Q 5 HOH A 15 3015 3015 HOH HOH . Q 5 HOH A 16 3016 3016 HOH HOH . Q 5 HOH A 17 3017 3017 HOH HOH . Q 5 HOH A 18 3018 3018 HOH HOH . Q 5 HOH A 19 3019 3019 HOH HOH . Q 5 HOH A 20 3020 3020 HOH HOH . Q 5 HOH A 21 3021 3021 HOH HOH . Q 5 HOH A 22 3022 3022 HOH HOH . Q 5 HOH A 23 3023 3023 HOH HOH . Q 5 HOH A 24 3024 3024 HOH HOH . Q 5 HOH A 25 3025 3025 HOH HOH . Q 5 HOH A 26 3026 3026 HOH HOH . Q 5 HOH A 27 3027 3027 HOH HOH . Q 5 HOH A 28 3028 3028 HOH HOH . Q 5 HOH A 29 3029 3029 HOH HOH . Q 5 HOH A 30 3030 3030 HOH HOH . Q 5 HOH A 31 3031 3031 HOH HOH . Q 5 HOH A 32 3032 3032 HOH HOH . Q 5 HOH A 33 3033 3033 HOH HOH . Q 5 HOH A 34 3034 3034 HOH HOH . Q 5 HOH A 35 3035 3035 HOH HOH . Q 5 HOH A 36 3036 3036 HOH HOH . R 5 HOH B 1 3001 3001 HOH HOH . R 5 HOH B 2 3002 3002 HOH HOH . R 5 HOH B 3 3003 3003 HOH HOH . R 5 HOH B 4 3004 3004 HOH HOH . R 5 HOH B 5 3005 3005 HOH HOH . R 5 HOH B 6 3006 3006 HOH HOH . R 5 HOH B 7 3007 3007 HOH HOH . R 5 HOH B 8 3008 3008 HOH HOH . R 5 HOH B 9 3009 3009 HOH HOH . R 5 HOH B 10 3010 3010 HOH HOH . R 5 HOH B 11 3011 3011 HOH HOH . R 5 HOH B 12 3012 3012 HOH HOH . R 5 HOH B 13 3013 3013 HOH HOH . R 5 HOH B 14 3014 3014 HOH HOH . R 5 HOH B 15 3015 3015 HOH HOH . R 5 HOH B 16 3016 3016 HOH HOH . R 5 HOH B 17 3017 3017 HOH HOH . R 5 HOH B 18 3018 3018 HOH HOH . R 5 HOH B 19 3019 3019 HOH HOH . R 5 HOH B 20 3020 3020 HOH HOH . R 5 HOH B 21 3021 3021 HOH HOH . R 5 HOH B 22 3022 3022 HOH HOH . R 5 HOH B 23 3023 3023 HOH HOH . R 5 HOH B 24 3024 3024 HOH HOH . R 5 HOH B 25 3025 3025 HOH HOH . R 5 HOH B 26 3026 3026 HOH HOH . R 5 HOH B 27 3027 3027 HOH HOH . R 5 HOH B 28 3028 3028 HOH HOH . S 5 HOH C 1 3001 3001 HOH HOH . S 5 HOH C 2 3002 3002 HOH HOH . S 5 HOH C 3 3003 3003 HOH HOH . S 5 HOH C 4 3004 3004 HOH HOH . S 5 HOH C 5 3005 3005 HOH HOH . S 5 HOH C 6 3006 3006 HOH HOH . S 5 HOH C 7 3007 3007 HOH HOH . S 5 HOH C 8 3008 3008 HOH HOH . S 5 HOH C 9 3009 3009 HOH HOH . S 5 HOH C 10 3010 3010 HOH HOH . S 5 HOH C 11 3011 3011 HOH HOH . S 5 HOH C 12 3012 3012 HOH HOH . S 5 HOH C 13 3013 3013 HOH HOH . S 5 HOH C 14 3014 3014 HOH HOH . S 5 HOH C 15 3015 3015 HOH HOH . S 5 HOH C 16 3016 3016 HOH HOH . S 5 HOH C 17 3017 3017 HOH HOH . S 5 HOH C 18 3018 3018 HOH HOH . S 5 HOH C 19 3019 3019 HOH HOH . S 5 HOH C 20 3020 3020 HOH HOH . S 5 HOH C 21 3021 3021 HOH HOH . S 5 HOH C 22 3022 3022 HOH HOH . S 5 HOH C 23 3023 3023 HOH HOH . S 5 HOH C 24 3024 3024 HOH HOH . S 5 HOH C 25 3025 3025 HOH HOH . S 5 HOH C 26 3026 3026 HOH HOH . S 5 HOH C 27 3027 3027 HOH HOH . S 5 HOH C 28 3028 3028 HOH HOH . S 5 HOH C 29 3029 3029 HOH HOH . S 5 HOH C 30 3030 3030 HOH HOH . S 5 HOH C 31 3031 3031 HOH HOH . S 5 HOH C 32 3032 3032 HOH HOH . S 5 HOH C 33 3033 3033 HOH HOH . S 5 HOH C 34 3034 3034 HOH HOH . S 5 HOH C 35 3035 3035 HOH HOH . S 5 HOH C 36 3036 3036 HOH HOH . S 5 HOH C 37 3037 3037 HOH HOH . S 5 HOH C 38 3038 3038 HOH HOH . S 5 HOH C 39 3039 3039 HOH HOH . S 5 HOH C 40 3040 3040 HOH HOH . S 5 HOH C 41 3041 3041 HOH HOH . T 5 HOH D 1 3001 3001 HOH HOH . T 5 HOH D 2 3002 3002 HOH HOH . T 5 HOH D 3 3003 3003 HOH HOH . T 5 HOH D 4 3004 3004 HOH HOH . T 5 HOH D 5 3005 3005 HOH HOH . T 5 HOH D 6 3006 3006 HOH HOH . T 5 HOH D 7 3007 3007 HOH HOH . T 5 HOH D 8 3008 3008 HOH HOH . T 5 HOH D 9 3009 3009 HOH HOH . T 5 HOH D 10 3010 3010 HOH HOH . T 5 HOH D 11 3011 3011 HOH HOH . T 5 HOH D 12 3012 3012 HOH HOH . T 5 HOH D 13 3013 3013 HOH HOH . T 5 HOH D 14 3014 3014 HOH HOH . T 5 HOH D 15 3015 3015 HOH HOH . T 5 HOH D 16 3016 3016 HOH HOH . T 5 HOH D 17 3017 3017 HOH HOH . T 5 HOH D 18 3018 3018 HOH HOH . T 5 HOH D 19 3019 3019 HOH HOH . T 5 HOH D 20 3020 3020 HOH HOH . T 5 HOH D 21 3021 3021 HOH HOH . T 5 HOH D 22 3022 3022 HOH HOH . T 5 HOH D 23 3023 3023 HOH HOH . T 5 HOH D 24 3024 3024 HOH HOH . T 5 HOH D 25 3025 3025 HOH HOH . T 5 HOH D 26 3026 3026 HOH HOH . T 5 HOH D 27 3027 3027 HOH HOH . T 5 HOH D 28 3028 3028 HOH HOH . T 5 HOH D 29 3029 3029 HOH HOH . T 5 HOH D 30 3030 3030 HOH HOH . T 5 HOH D 31 3031 3031 HOH HOH . T 5 HOH D 32 3032 3032 HOH HOH . T 5 HOH D 33 3033 3033 HOH HOH . T 5 HOH D 34 3034 3034 HOH HOH . T 5 HOH D 35 3035 3035 HOH HOH . T 5 HOH D 36 3036 3036 HOH HOH . T 5 HOH D 37 3037 3037 HOH HOH . T 5 HOH D 38 3038 3038 HOH HOH . T 5 HOH D 39 3039 3039 HOH HOH . T 5 HOH D 40 3040 3040 HOH HOH . T 5 HOH D 41 3041 3041 HOH HOH . T 5 HOH D 42 3042 3042 HOH HOH . T 5 HOH D 43 3043 3043 HOH HOH . T 5 HOH D 44 3044 3044 HOH HOH . T 5 HOH D 45 3045 3045 HOH HOH . T 5 HOH D 46 3049 3049 HOH HOH . T 5 HOH D 47 3051 3051 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O19 12P . . . K 3 -37.683 -72.912 46.059 1 107.31 ? O19 12P 1200 B 1 HETATM 2 C C18 12P . . . K 3 -36.269 -73.007 45.994 1 107.13 ? C18 12P 1200 B 1 HETATM 3 C C17 12P . . . K 3 -35.863 -73.477 44.642 1 104.05 ? C17 12P 1200 B 1 HETATM 4 O O16 12P . . . K 3 -36.303 -72.551 43.65 1 101.66 ? O16 12P 1200 B 1 HETATM 5 C C15 12P . . . K 3 -35.294 -71.678 43.132 1 99.98 ? C15 12P 1200 B 1 HETATM 6 C C14 12P . . . K 3 -35.23 -70.42 43.946 1 98.62 ? C14 12P 1200 B 1 HETATM 7 O O13 12P . . . K 3 -34.871 -69.31 43.127 1 94.47 ? O13 12P 1200 B 1 HETATM 8 C C12 12P . . . K 3 -35.038 -68.043 43.761 1 91.55 ? C12 12P 1200 B 1 HETATM 9 C C11 12P . . . K 3 -33.711 -67.397 43.973 1 89.1 ? C11 12P 1200 B 1 HETATM 10 O O10 12P . . . K 3 -33.841 -66.336 44.916 1 87.94 ? O10 12P 1200 B 1 HETATM 11 C C9 12P . . . K 3 -33.303 -65.086 44.495 1 86.07 ? C9 12P 1200 B 1 HETATM 12 C C8 12P . . . K 3 -34.282 -64.396 43.609 1 84.26 ? C8 12P 1200 B 1 HETATM 13 O O7 12P . . . K 3 -33.958 -63.016 43.489 1 83.31 ? O7 12P 1200 B 1 HETATM 14 C C6 12P . . . K 3 -33.034 -62.721 42.452 1 81.63 ? C6 12P 1200 B 1 HETATM 15 C C5 12P . . . K 3 -33.737 -62.038 41.332 1 80.18 ? C5 12P 1200 B 1 HETATM 16 O O4 12P . . . K 3 -32.818 -61.823 40.26 1 78.11 ? O4 12P 1200 B 1 HETATM 17 C C3 12P . . . K 3 -32.687 -60.466 39.849 1 78.3 ? C3 12P 1200 B 1 HETATM 18 C C2 12P . . . K 3 -31.367 -60.266 39.187 1 78.25 ? C2 12P 1200 B 1 HETATM 19 O O1 12P . . . K 3 -31.168 -61.183 38.134 1 77.83 ? O1 12P 1200 B 1 HETATM 20 H H181 12P . . . K 3 -35.886 -73.705 46.737 1 108.47 ? H181 12P 1200 B 1 HETATM 21 H H182 12P . . . K 3 -35.811 -72.048 46.232 1 107.83 ? H182 12P 1200 B 1 HETATM 22 H H171 12P . . . K 3 -36.306 -74.453 44.451 1 103.51 ? H171 12P 1200 B 1 HETATM 23 H H172 12P . . . K 3 -34.786 -73.639 44.639 1 104.56 ? H172 12P 1200 B 1 HETATM 24 H H151 12P . . . K 3 -35.5 -71.426 42.093 1 98.79 ? H151 12P 1200 B 1 HETATM 25 H H152 12P . . . K 3 -34.32 -72.165 43.114 1 100.46 ? H152 12P 1200 B 1 HETATM 26 H H141 12P . . . K 3 -34.496 -70.52 44.744 1 99.76 ? H141 12P 1200 B 1 HETATM 27 H H142 12P . . . K 3 -36.191 -70.268 44.434 1 99.12 ? H142 12P 1200 B 1 HETATM 28 H H121 12P . . . K 3 -35.554 -68.115 44.717 1 92.49 ? H121 12P 1200 B 1 HETATM 29 H H122 12P . . . K 3 -35.661 -67.401 43.141 1 91.07 ? H122 12P 1200 B 1 HETATM 30 H H111 12P . . . K 3 -33.329 -67.038 43.018 1 88.43 ? H111 12P 1200 B 1 HETATM 31 H H112 12P . . . K 3 -32.998 -68.147 44.312 1 89.51 ? H112 12P 1200 B 1 HETATM 32 H H91 12P . . . K 3 -32.364 -65.208 43.957 1 85.66 ? H91 12P 1200 B 1 HETATM 33 H H92 12P . . . K 3 -33.072 -64.482 45.371 1 87.24 ? H92 12P 1200 B 1 HETATM 34 H H81 12P . . . K 3 -35.286 -64.482 44.019 1 84.88 ? H81 12P 1200 B 1 HETATM 35 H H82 12P . . . K 3 -34.297 -64.894 42.64 1 83.13 ? H82 12P 1200 B 1 HETATM 36 H H61 12P . . . K 3 -32.513 -63.603 42.082 1 80.83 ? H61 12P 1200 B 1 HETATM 37 H H62 12P . . . K 3 -32.253 -62.065 42.836 1 82.58 ? H62 12P 1200 B 1 HETATM 38 H H51 12P . . . K 3 -34.231 -61.122 41.654 1 81.04 ? H51 12P 1200 B 1 HETATM 39 H H52 12P . . . K 3 -34.543 -62.692 41.005 1 79.65 ? H52 12P 1200 B 1 HETATM 40 H H31 12P . . . K 3 -32.757 -59.793 40.702 1 79.52 ? H31 12P 1200 B 1 HETATM 41 H H32 12P . . . K 3 -33.484 -60.169 39.169 1 78.32 ? H32 12P 1200 B 1 HETATM 42 H H21 12P . . . K 3 -30.56 -60.292 39.918 1 78.71 ? H21 12P 1200 B 1 HETATM 43 H H22 12P . . . K 3 -31.312 -59.3 38.688 1 78.73 ? H22 12P 1200 B 1 HETATM 44 H HO1 12P . . . K 3 -31.876 -61.002 37.462 1 77.92 ? HO1 12P 1200 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #