data_3ZKK # _model_server_result.job_id CBmSuB4t7Ma_CwHPcZW41A _model_server_result.datetime_utc '2024-12-14 22:27:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zkk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1426}' # _entry.id 3ZKK # _exptl.entry_id 3ZKK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 326.383 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ZKK _cell.length_a 68.045 _cell.length_b 124.049 _cell.length_c 61.334 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZKK _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 XYP XYP C1 O1 . O4 HO4 . sing 2 ? 2 3 2 XYP XYP C1 O1 . O4 HO4 . sing 3 ? 2 4 3 XYP XYP C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B XYP 1 B 1 XYP A 1430 XYP 2 n B XYP 2 B 2 XYP A 1429 XYP 2 n B XYP 3 B 3 XYP A 1428 XYP 2 n B XYP 4 B 4 XYP A 1427 XYP # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 197 A CYS 209 1_555 A SG CYS 215 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? covale ? covale1 B O4 XYP . B XYP 1 1_555 B C1 XYP . B XYP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale2 B O4 XYP . B XYP 2 1_555 B C1 XYP . B XYP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale3 B O4 XYP . B XYP 3 1_555 B C1 XYP . B XYP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C14 H30 O8' _chem_comp.formula_weight 326.383 _chem_comp.id P33 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HEPTAETHYLENE GLYCOL;PEG330' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C21 P33 sing 237 n n O22 H22 P33 sing 238 n n C21 C20 P33 sing 239 n n C21 H211 P33 sing 240 n n C21 H212 P33 sing 241 n n C20 O19 P33 sing 242 n n C20 H201 P33 sing 243 n n C20 H202 P33 sing 244 n n O19 C18 P33 sing 245 n n C18 C17 P33 sing 246 n n C18 H181 P33 sing 247 n n C18 H182 P33 sing 248 n n C17 O16 P33 sing 249 n n C17 H171 P33 sing 250 n n C17 H172 P33 sing 251 n n O16 C15 P33 sing 252 n n C15 C14 P33 sing 253 n n C15 H151 P33 sing 254 n n C15 H152 P33 sing 255 n n C14 O13 P33 sing 256 n n C14 H141 P33 sing 257 n n C14 H142 P33 sing 258 n n O13 C12 P33 sing 259 n n C12 C11 P33 sing 260 n n C12 H121 P33 sing 261 n n C12 H122 P33 sing 262 n n C11 O10 P33 sing 263 n n C11 H111 P33 sing 264 n n C11 H112 P33 sing 265 n n O10 C9 P33 sing 266 n n C9 C8 P33 sing 267 n n C9 H91 P33 sing 268 n n C9 H92 P33 sing 269 n n C8 O7 P33 sing 270 n n C8 H81 P33 sing 271 n n C8 H82 P33 sing 272 n n O7 C6 P33 sing 273 n n C6 C5 P33 sing 274 n n C6 H61 P33 sing 275 n n C6 H62 P33 sing 276 n n C5 O4 P33 sing 277 n n C5 H51 P33 sing 278 n n C5 H52 P33 sing 279 n n O4 C3 P33 sing 280 n n C3 C2 P33 sing 281 n n C3 H31 P33 sing 282 n n C3 H32 P33 sing 283 n n C2 O1 P33 sing 284 n n C2 H21 P33 sing 285 n n C2 H22A P33 sing 286 n n O1 HO1 P33 sing 287 n n # _atom_sites.entry_id 3ZKK _atom_sites.fract_transf_matrix[1][1] 0.014696 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008061 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016304 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 P33 A 1 1426 1426 P33 P33 . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . D 4 HOH A 78 2078 2078 HOH HOH . D 4 HOH A 79 2079 2079 HOH HOH . D 4 HOH A 80 2080 2080 HOH HOH . D 4 HOH A 81 2081 2081 HOH HOH . D 4 HOH A 82 2082 2082 HOH HOH . D 4 HOH A 83 2083 2083 HOH HOH . D 4 HOH A 84 2084 2084 HOH HOH . D 4 HOH A 85 2085 2085 HOH HOH . D 4 HOH A 86 2086 2086 HOH HOH . D 4 HOH A 87 2087 2087 HOH HOH . D 4 HOH A 88 2088 2088 HOH HOH . D 4 HOH A 89 2089 2089 HOH HOH . D 4 HOH A 90 2090 2090 HOH HOH . D 4 HOH A 91 2091 2091 HOH HOH . D 4 HOH A 92 2092 2092 HOH HOH . D 4 HOH A 93 2093 2093 HOH HOH . D 4 HOH A 94 2094 2094 HOH HOH . D 4 HOH A 95 2095 2095 HOH HOH . D 4 HOH A 96 2096 2096 HOH HOH . D 4 HOH A 97 2097 2097 HOH HOH . D 4 HOH A 98 2098 2098 HOH HOH . D 4 HOH A 99 2099 2099 HOH HOH . D 4 HOH A 100 2100 2100 HOH HOH . D 4 HOH A 101 2101 2101 HOH HOH . D 4 HOH A 102 2102 2102 HOH HOH . D 4 HOH A 103 2103 2103 HOH HOH . D 4 HOH A 104 2104 2104 HOH HOH . D 4 HOH A 105 2105 2105 HOH HOH . D 4 HOH A 106 2106 2106 HOH HOH . D 4 HOH A 107 2107 2107 HOH HOH . D 4 HOH A 108 2108 2108 HOH HOH . D 4 HOH A 109 2109 2109 HOH HOH . D 4 HOH A 110 2110 2110 HOH HOH . D 4 HOH A 111 2111 2111 HOH HOH . D 4 HOH A 112 2112 2112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 P33 . . . C 3 35.488 35.151 27.577 1 39.86 ? O22 P33 1426 A 1 HETATM 2 C C21 P33 . . . C 3 35.221 34.908 26.246 1 35.6 ? C21 P33 1426 A 1 HETATM 3 C C20 P33 . . . C 3 35.198 33.436 26.003 1 34.22 ? C20 P33 1426 A 1 HETATM 4 O O19 P33 . . . C 3 33.967 32.957 26.384 1 40.12 ? O19 P33 1426 A 1 HETATM 5 C C18 P33 . . . C 3 33.534 31.733 25.927 1 33.24 ? C18 P33 1426 A 1 HETATM 6 C C17 P33 . . . C 3 33.706 30.748 27.022 1 29.34 ? C17 P33 1426 A 1 HETATM 7 O O16 P33 . . . C 3 32.459 30.443 27.517 1 29.38 ? O16 P33 1426 A 1 HETATM 8 C C15 P33 . . . C 3 31.843 31.316 28.383 1 27.78 ? C15 P33 1426 A 1 HETATM 9 C C14 P33 . . . C 3 31.995 30.874 29.797 1 24.81 ? C14 P33 1426 A 1 HETATM 10 O O13 P33 . . . C 3 31.423 31.816 30.634 1 27.05 ? O13 P33 1426 A 1 HETATM 11 C C12 P33 . . . C 3 31.706 33.163 30.514 1 31.46 ? C12 P33 1426 A 1 HETATM 12 C C11 P33 . . . C 3 32.634 33.593 31.612 1 38.2 ? C11 P33 1426 A 1 HETATM 13 O O10 P33 . . . C 3 32.482 34.933 31.958 1 39.7 ? O10 P33 1426 A 1 HETATM 14 C C9 P33 . . . C 3 31.437 35.356 32.774 1 35.06 ? C9 P33 1426 A 1 HETATM 15 C C8 P33 . . . C 3 30.891 34.224 33.599 1 31.05 ? C8 P33 1426 A 1 HETATM 16 O O7 P33 . . . C 3 30.065 34.703 34.588 1 33.76 ? O7 P33 1426 A 1 HETATM 17 C C6 P33 . . . C 3 28.894 34.042 34.892 1 27.41 ? C6 P33 1426 A 1 HETATM 18 C C5 P33 . . . C 3 27.922 35.049 35.413 1 28.49 ? C5 P33 1426 A 1 HETATM 19 O O4 P33 . . . C 3 28.101 35.137 36.779 1 37.54 ? O4 P33 1426 A 1 HETATM 20 C C3 P33 . . . C 3 27.722 36.252 37.506 1 39.84 ? C3 P33 1426 A 1 HETATM 21 C C2 P33 . . . C 3 27.177 35.797 38.827 1 43.74 ? C2 P33 1426 A 1 HETATM 22 O O1 P33 . . . C 3 25.888 35.292 38.699 1 43.16 ? O1 P33 1426 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #