data_3ZKS # _model_server_result.job_id eKL0tIzRPaGNrvXfYty3JA _model_server_result.datetime_utc '2024-11-08 17:42:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zks # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1398}' # _entry.id 3ZKS # _exptl.entry_id 3ZKS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 435.4 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-(2,2,2-Trifluoro-ethoxy)-pyridine-2-carboxylic acid [3-((S)-2-amino-1,4-dimethyl-6-oxo-1,4,5,6-tetrahydro-pyrimidin-4-yl)-phenyl]-amide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ZKS _cell.length_a 64.101 _cell.length_b 74.764 _cell.length_c 108.721 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZKS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 159 A CYS 171 1_555 A SG CYS 359 A CYS 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf2 A SG CYS 218 A CYS 230 1_555 A SG CYS 383 A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf3 A SG CYS 270 A CYS 282 1_555 A SG CYS 319 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf4 B SG CYS 22 D CYS 181 1_555 B SG CYS 96 D CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? # _chem_comp.formula 'C20 H20 F3 N5 O3' _chem_comp.formula_weight 435.4 _chem_comp.id WZV _chem_comp.mon_nstd_flag . _chem_comp.name '5-(2,2,2-Trifluoro-ethoxy)-pyridine-2-carboxylic acid [3-((S)-2-amino-1,4-dimethyl-6-oxo-1,4,5,6-tetrahydro-pyrimidin-4-yl)-phenyl]-amide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F30 C28 WZV sing 376 n n C28 F31 WZV sing 377 n n C28 F29 WZV sing 378 n n C28 C27 WZV sing 379 n n C27 O26 WZV sing 380 n n O26 C18 WZV sing 381 n n C18 C23 WZV sing 382 n y C18 C19 WZV doub 383 n y C23 N22 WZV doub 384 n y N22 C21 WZV sing 385 n y C19 C20 WZV sing 386 n y C20 C21 WZV doub 387 n y C21 C24 WZV sing 388 n n C24 O25 WZV doub 389 n n C24 N13 WZV sing 390 n n N13 C7 WZV sing 391 n n C7 C12 WZV sing 392 n y C7 C8 WZV doub 393 n y C12 C11 WZV doub 394 n y C8 C9 WZV sing 395 n y C9 C10 WZV doub 396 n y C10 C11 WZV sing 397 n y C11 C1 WZV sing 398 n n C1 C2 WZV sing 399 n n C1 C14 WZV sing 400 n n C1 N6 WZV sing 401 n n C2 C3 WZV sing 402 n n C3 O16 WZV doub 403 n n C3 N4 WZV sing 404 n n N6 C5 WZV doub 405 n n C5 N15 WZV sing 406 n n C5 N4 WZV sing 407 n n N4 C17 WZV sing 408 n n C27 H271 WZV sing 409 n n C27 H272 WZV sing 410 n n C23 H23 WZV sing 411 n n C19 H19 WZV sing 412 n n C20 H20 WZV sing 413 n n N13 H13 WZV sing 414 n n C12 H12 WZV sing 415 n n C8 H8 WZV sing 416 n n C9 H9 WZV sing 417 n n C10 H10 WZV sing 418 n n C2 H21C WZV sing 419 n n C2 H22C WZV sing 420 n n C14 H141 WZV sing 421 n n C14 H142 WZV sing 422 n n C14 H143 WZV sing 423 n n N15 H151 WZV sing 424 n n N15 H152 WZV sing 425 n n C17 H171 WZV sing 426 n n C17 H172 WZV sing 427 n n C17 H173 WZV sing 428 n n # _atom_sites.entry_id 3ZKS _atom_sites.fract_transf_matrix[1][1] 0.0156 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013375 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009198 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 WZV A 1 1398 1398 WZV WZV . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . D 4 HOH A 78 2078 2078 HOH HOH . D 4 HOH A 79 2079 2079 HOH HOH . D 4 HOH A 80 2080 2080 HOH HOH . D 4 HOH A 81 2081 2081 HOH HOH . D 4 HOH A 82 2082 2082 HOH HOH . D 4 HOH A 83 2083 2083 HOH HOH . D 4 HOH A 84 2084 2084 HOH HOH . D 4 HOH A 85 2085 2085 HOH HOH . D 4 HOH A 86 2086 2086 HOH HOH . D 4 HOH A 87 2087 2087 HOH HOH . D 4 HOH A 88 2088 2088 HOH HOH . D 4 HOH A 89 2089 2089 HOH HOH . D 4 HOH A 90 2090 2090 HOH HOH . D 4 HOH A 91 2091 2091 HOH HOH . D 4 HOH A 92 2092 2092 HOH HOH . D 4 HOH A 93 2093 2093 HOH HOH . D 4 HOH A 94 2094 2094 HOH HOH . D 4 HOH A 95 2095 2095 HOH HOH . D 4 HOH A 96 2096 2096 HOH HOH . D 4 HOH A 97 2097 2097 HOH HOH . D 4 HOH A 98 2098 2098 HOH HOH . D 4 HOH A 99 2099 2099 HOH HOH . D 4 HOH A 100 2100 2100 HOH HOH . D 4 HOH A 101 2101 2101 HOH HOH . D 4 HOH A 102 2102 2102 HOH HOH . D 4 HOH A 103 2103 2103 HOH HOH . D 4 HOH A 104 2104 2104 HOH HOH . D 4 HOH A 105 2105 2105 HOH HOH . D 4 HOH A 106 2106 2106 HOH HOH . D 4 HOH A 107 2107 2107 HOH HOH . D 4 HOH A 108 2108 2108 HOH HOH . E 4 HOH D 1 2001 2001 HOH HOH . E 4 HOH D 2 2002 2002 HOH HOH . E 4 HOH D 3 2003 2003 HOH HOH . E 4 HOH D 4 2004 2004 HOH HOH . E 4 HOH D 5 2005 2005 HOH HOH . E 4 HOH D 6 2006 2006 HOH HOH . E 4 HOH D 7 2007 2007 HOH HOH . E 4 HOH D 8 2008 2008 HOH HOH . E 4 HOH D 9 2009 2009 HOH HOH . E 4 HOH D 10 2010 2010 HOH HOH . E 4 HOH D 11 2011 2011 HOH HOH . E 4 HOH D 12 2012 2012 HOH HOH . E 4 HOH D 13 2013 2013 HOH HOH . E 4 HOH D 14 2014 2014 HOH HOH . E 4 HOH D 15 2015 2015 HOH HOH . E 4 HOH D 16 2016 2016 HOH HOH . E 4 HOH D 17 2017 2017 HOH HOH . E 4 HOH D 18 2018 2018 HOH HOH . E 4 HOH D 19 2019 2019 HOH HOH . E 4 HOH D 20 2020 2020 HOH HOH . E 4 HOH D 21 2021 2021 HOH HOH . E 4 HOH D 22 2022 2022 HOH HOH . E 4 HOH D 23 2023 2023 HOH HOH . E 4 HOH D 24 2024 2024 HOH HOH . E 4 HOH D 25 2025 2025 HOH HOH . E 4 HOH D 26 2026 2026 HOH HOH . E 4 HOH D 27 2027 2027 HOH HOH . E 4 HOH D 28 2028 2028 HOH HOH . E 4 HOH D 29 2029 2029 HOH HOH . E 4 HOH D 30 2030 2030 HOH HOH . E 4 HOH D 31 2031 2031 HOH HOH . E 4 HOH D 32 2032 2032 HOH HOH . E 4 HOH D 33 2033 2033 HOH HOH . E 4 HOH D 34 2034 2034 HOH HOH . E 4 HOH D 35 2035 2035 HOH HOH . E 4 HOH D 36 2036 2036 HOH HOH . E 4 HOH D 37 2037 2037 HOH HOH . E 4 HOH D 38 2038 2038 HOH HOH . E 4 HOH D 39 2039 2039 HOH HOH . E 4 HOH D 40 2040 2040 HOH HOH . E 4 HOH D 41 2041 2041 HOH HOH . E 4 HOH D 42 2042 2042 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F30 WZV . . . C 3 25.756 -16.842 -14.2 1 53.81 ? F30 WZV 1398 A 1 HETATM 2 C C28 WZV . . . C 3 25.477 -16.066 -13.112 1 57.11 ? C28 WZV 1398 A 1 HETATM 3 F F31 WZV . . . C 3 26.641 -15.388 -12.852 1 54.64 ? F31 WZV 1398 A 1 HETATM 4 F F29 WZV . . . C 3 25.328 -17.003 -12.107 1 62.44 ? F29 WZV 1398 A 1 HETATM 5 C C27 WZV . . . C 3 24.214 -15.132 -13.239 1 53.96 ? C27 WZV 1398 A 1 HETATM 6 O O26 WZV . . . C 3 24.615 -13.895 -13.842 1 48.55 ? O26 WZV 1398 A 1 HETATM 7 C C18 WZV . . . C 3 23.627 -13.158 -14.485 1 43.91 ? C18 WZV 1398 A 1 HETATM 8 C C23 WZV . . . C 3 23.803 -11.81 -14.865 1 40.44 ? C23 WZV 1398 A 1 HETATM 9 N N22 WZV . . . C 3 22.852 -11.099 -15.489 1 35.21 ? N22 WZV 1398 A 1 HETATM 10 C C19 WZV . . . C 3 22.38 -13.776 -14.769 1 39.26 ? C19 WZV 1398 A 1 HETATM 11 C C20 WZV . . . C 3 21.378 -13.031 -15.412 1 36.85 ? C20 WZV 1398 A 1 HETATM 12 C C21 WZV . . . C 3 21.669 -11.688 -15.768 1 35.47 ? C21 WZV 1398 A 1 HETATM 13 C C24 WZV . . . C 3 20.613 -10.85 -16.454 1 33.61 ? C24 WZV 1398 A 1 HETATM 14 O O25 WZV . . . C 3 19.452 -11.265 -16.563 1 36.13 ? O25 WZV 1398 A 1 HETATM 15 N N13 WZV . . . C 3 21.024 -9.617 -16.904 1 30.77 ? N13 WZV 1398 A 1 HETATM 16 C C7 WZV . . . C 3 20.262 -8.627 -17.524 1 28.01 ? C7 WZV 1398 A 1 HETATM 17 C C12 WZV . . . C 3 20.836 -7.325 -17.581 1 29.01 ? C12 WZV 1398 A 1 HETATM 18 C C8 WZV . . . C 3 18.971 -8.852 -18.028 1 25.99 ? C8 WZV 1398 A 1 HETATM 19 C C9 WZV . . . C 3 18.307 -7.779 -18.613 1 26.51 ? C9 WZV 1398 A 1 HETATM 20 C C10 WZV . . . C 3 18.868 -6.503 -18.707 1 27.95 ? C10 WZV 1398 A 1 HETATM 21 C C11 WZV . . . C 3 20.146 -6.263 -18.17 1 27.19 ? C11 WZV 1398 A 1 HETATM 22 C C1 WZV . . . C 3 20.787 -4.881 -18.272 1 27.03 ? C1 WZV 1398 A 1 HETATM 23 C C2 WZV . . . C 3 21.053 -4.54 -19.755 1 25.91 ? C2 WZV 1398 A 1 HETATM 24 C C3 WZV . . . C 3 22.181 -5.396 -20.297 1 28.49 ? C3 WZV 1398 A 1 HETATM 25 O O16 WZV . . . C 3 22.178 -5.768 -21.469 1 29.23 ? O16 WZV 1398 A 1 HETATM 26 C C14 WZV . . . C 3 19.681 -3.883 -17.833 1 27.37 ? C14 WZV 1398 A 1 HETATM 27 N N6 WZV . . . C 3 22.046 -4.872 -17.522 1 25.95 ? N6 WZV 1398 A 1 HETATM 28 C C5 WZV . . . C 3 23.158 -5.299 -18.094 1 24.97 ? C5 WZV 1398 A 1 HETATM 29 N N15 WZV . . . C 3 24.391 -5.296 -17.368 1 25.53 ? N15 WZV 1398 A 1 HETATM 30 N N4 WZV . . . C 3 23.235 -5.765 -19.449 1 26.98 ? N4 WZV 1398 A 1 HETATM 31 C C17 WZV . . . C 3 24.328 -6.579 -19.93 1 24.05 ? C17 WZV 1398 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #