data_3ZNP # _model_server_result.job_id Y4MTsAIZ7PUkS4VDIpEkGQ _model_server_result.datetime_utc '2024-11-27 08:00:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3znp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":350}' # _entry.id 3ZNP # _exptl.entry_id 3ZNP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ZNP _cell.length_a 84.069 _cell.length_b 84.069 _cell.length_c 189.163 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZNP _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,M 1 1,2 B,I,J,K,L,N 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -63.054333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 3ZNP _atom_sites.fract_transf_matrix[1][1] 0.011895 _atom_sites.fract_transf_matrix[1][2] 0.006868 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013735 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005286 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 350 350 FAD FAD . D 3 SE2 A 1 360 360 SE2 SE2 . E 4 GOL A 1 1341 1341 GOL GOL . F 4 GOL A 1 1342 1342 GOL GOL . G 4 GOL A 1 1343 1343 GOL GOL . H 4 GOL A 1 1344 1344 GOL GOL . I 2 FAD B 1 350 350 FAD FAD . J 4 GOL B 1 1341 1341 GOL GOL . K 4 GOL B 1 1342 1342 GOL GOL . L 4 GOL B 1 1343 1343 GOL GOL . M 5 HOH A 1 2001 2001 HOH HOH . M 5 HOH A 2 2002 2002 HOH HOH . M 5 HOH A 3 2003 2003 HOH HOH . M 5 HOH A 4 2004 2004 HOH HOH . M 5 HOH A 5 2005 2005 HOH HOH . M 5 HOH A 6 2006 2006 HOH HOH . M 5 HOH A 7 2007 2007 HOH HOH . M 5 HOH A 8 2008 2008 HOH HOH . M 5 HOH A 9 2009 2009 HOH HOH . M 5 HOH A 10 2010 2010 HOH HOH . M 5 HOH A 11 2011 2011 HOH HOH . M 5 HOH A 12 2012 2012 HOH HOH . M 5 HOH A 13 2013 2013 HOH HOH . M 5 HOH A 14 2014 2014 HOH HOH . M 5 HOH A 15 2015 2015 HOH HOH . M 5 HOH A 16 2016 2016 HOH HOH . M 5 HOH A 17 2017 2017 HOH HOH . M 5 HOH A 18 2018 2018 HOH HOH . M 5 HOH A 19 2019 2019 HOH HOH . M 5 HOH A 20 2020 2020 HOH HOH . M 5 HOH A 21 2021 2021 HOH HOH . M 5 HOH A 22 2022 2022 HOH HOH . M 5 HOH A 23 2023 2023 HOH HOH . M 5 HOH A 24 2024 2024 HOH HOH . M 5 HOH A 25 2025 2025 HOH HOH . M 5 HOH A 26 2026 2026 HOH HOH . M 5 HOH A 27 2027 2027 HOH HOH . M 5 HOH A 28 2028 2028 HOH HOH . M 5 HOH A 29 2029 2029 HOH HOH . M 5 HOH A 30 2030 2030 HOH HOH . M 5 HOH A 31 2031 2031 HOH HOH . M 5 HOH A 32 2032 2032 HOH HOH . M 5 HOH A 33 2033 2033 HOH HOH . M 5 HOH A 34 2034 2034 HOH HOH . M 5 HOH A 35 2035 2035 HOH HOH . M 5 HOH A 36 2036 2036 HOH HOH . M 5 HOH A 37 2037 2037 HOH HOH . M 5 HOH A 38 2038 2038 HOH HOH . M 5 HOH A 39 2039 2039 HOH HOH . M 5 HOH A 40 2040 2040 HOH HOH . M 5 HOH A 41 2041 2041 HOH HOH . M 5 HOH A 42 2042 2042 HOH HOH . M 5 HOH A 43 2043 2043 HOH HOH . M 5 HOH A 44 2044 2044 HOH HOH . M 5 HOH A 45 2045 2045 HOH HOH . M 5 HOH A 46 2046 2046 HOH HOH . M 5 HOH A 47 2047 2047 HOH HOH . M 5 HOH A 48 2048 2048 HOH HOH . M 5 HOH A 49 2049 2049 HOH HOH . M 5 HOH A 50 2050 2050 HOH HOH . M 5 HOH A 51 2051 2051 HOH HOH . M 5 HOH A 52 2052 2052 HOH HOH . M 5 HOH A 53 2053 2053 HOH HOH . M 5 HOH A 54 2054 2054 HOH HOH . M 5 HOH A 55 2055 2055 HOH HOH . M 5 HOH A 56 2056 2056 HOH HOH . M 5 HOH A 57 2057 2057 HOH HOH . M 5 HOH A 58 2058 2058 HOH HOH . M 5 HOH A 59 2059 2059 HOH HOH . M 5 HOH A 60 2060 2060 HOH HOH . M 5 HOH A 61 2061 2061 HOH HOH . M 5 HOH A 62 2062 2062 HOH HOH . M 5 HOH A 63 2063 2063 HOH HOH . M 5 HOH A 64 2064 2064 HOH HOH . M 5 HOH A 65 2065 2065 HOH HOH . M 5 HOH A 66 2066 2066 HOH HOH . M 5 HOH A 67 2067 2067 HOH HOH . M 5 HOH A 68 2068 2068 HOH HOH . M 5 HOH A 69 2069 2069 HOH HOH . M 5 HOH A 70 2070 2070 HOH HOH . N 5 HOH B 1 2001 2001 HOH HOH . N 5 HOH B 2 2002 2002 HOH HOH . N 5 HOH B 3 2003 2003 HOH HOH . N 5 HOH B 4 2004 2004 HOH HOH . N 5 HOH B 5 2005 2005 HOH HOH . N 5 HOH B 6 2006 2006 HOH HOH . N 5 HOH B 7 2007 2007 HOH HOH . N 5 HOH B 8 2008 2008 HOH HOH . N 5 HOH B 9 2009 2009 HOH HOH . N 5 HOH B 10 2010 2010 HOH HOH . N 5 HOH B 11 2011 2011 HOH HOH . N 5 HOH B 12 2012 2012 HOH HOH . N 5 HOH B 13 2013 2013 HOH HOH . N 5 HOH B 14 2014 2014 HOH HOH . N 5 HOH B 15 2015 2015 HOH HOH . N 5 HOH B 16 2016 2016 HOH HOH . N 5 HOH B 17 2017 2017 HOH HOH . N 5 HOH B 18 2018 2018 HOH HOH . N 5 HOH B 19 2019 2019 HOH HOH . N 5 HOH B 20 2020 2020 HOH HOH . N 5 HOH B 21 2021 2021 HOH HOH . N 5 HOH B 22 2022 2022 HOH HOH . N 5 HOH B 23 2023 2023 HOH HOH . N 5 HOH B 24 2024 2024 HOH HOH . N 5 HOH B 25 2025 2025 HOH HOH . N 5 HOH B 26 2026 2026 HOH HOH . N 5 HOH B 27 2027 2027 HOH HOH . N 5 HOH B 28 2028 2028 HOH HOH . N 5 HOH B 29 2029 2029 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . I 2 -23.926 15.93 -7.689 1 74.35 ? PA FAD 350 B 1 HETATM 2 O O1A FAD . . . I 2 -22.889 16.137 -8.734 1 75.54 ? O1A FAD 350 B 1 HETATM 3 O O2A FAD . . . I 2 -24.996 14.957 -8.014 1 77.67 ? O2A FAD 350 B 1 HETATM 4 O O5B FAD . . . I 2 -23.286 15.457 -6.288 1 72.29 ? O5B FAD 350 B 1 HETATM 5 C C5B FAD . . . I 2 -24.024 14.653 -5.351 1 71.15 ? C5B FAD 350 B 1 HETATM 6 C C4B FAD . . . I 2 -22.841 14.181 -4.533 1 70.62 ? C4B FAD 350 B 1 HETATM 7 O O4B FAD . . . I 2 -23.402 13.854 -3.316 1 72.1 ? O4B FAD 350 B 1 HETATM 8 C C3B FAD . . . I 2 -22.179 12.847 -4.944 1 69.17 ? C3B FAD 350 B 1 HETATM 9 O O3B FAD . . . I 2 -20.86 12.971 -4.491 1 67.76 ? O3B FAD 350 B 1 HETATM 10 C C2B FAD . . . I 2 -23.011 11.804 -4.27 1 71.18 ? C2B FAD 350 B 1 HETATM 11 O O2B FAD . . . I 2 -22.334 10.628 -3.941 1 74.72 ? O2B FAD 350 B 1 HETATM 12 C C1B FAD . . . I 2 -23.159 12.488 -3.01 1 71.53 ? C1B FAD 350 B 1 HETATM 13 N N9A FAD . . . I 2 -24.124 11.931 -2.119 1 74.55 ? N9A FAD 350 B 1 HETATM 14 C C8A FAD . . . I 2 -25.434 11.929 -2.261 1 75.92 ? C8A FAD 350 B 1 HETATM 15 N N7A FAD . . . I 2 -25.974 11.29 -1.146 1 75.67 ? N7A FAD 350 B 1 HETATM 16 C C5A FAD . . . I 2 -24.943 10.898 -0.34 1 75.48 ? C5A FAD 350 B 1 HETATM 17 C C6A FAD . . . I 2 -24.801 10.227 0.903 1 78.45 ? C6A FAD 350 B 1 HETATM 18 N N6A FAD . . . I 2 -25.833 9.766 1.618 1 80.06 ? N6A FAD 350 B 1 HETATM 19 N N1A FAD . . . I 2 -23.495 10.03 1.416 1 81.54 ? N1A FAD 350 B 1 HETATM 20 C C2A FAD . . . I 2 -22.379 10.467 0.761 1 80.53 ? C2A FAD 350 B 1 HETATM 21 N N3A FAD . . . I 2 -22.577 11.092 -0.436 1 76.38 ? N3A FAD 350 B 1 HETATM 22 C C4A FAD . . . I 2 -23.79 11.326 -0.991 1 74.34 ? C4A FAD 350 B 1 HETATM 23 N N1 FAD . . . I 2 -25.759 22.762 -15.103 1 67.8 ? N1 FAD 350 B 1 HETATM 24 C C2 FAD . . . I 2 -25.205 23.89 -15.787 1 69.94 ? C2 FAD 350 B 1 HETATM 25 O O2 FAD . . . I 2 -24.971 25.021 -15.128 1 75.78 ? O2 FAD 350 B 1 HETATM 26 N N3 FAD . . . I 2 -24.894 23.952 -17.084 1 65.69 ? N3 FAD 350 B 1 HETATM 27 C C4 FAD . . . I 2 -25.143 22.815 -17.86 1 68.25 ? C4 FAD 350 B 1 HETATM 28 O O4 FAD . . . I 2 -24.766 22.848 -19.137 1 72.21 ? O4 FAD 350 B 1 HETATM 29 C C4X FAD . . . I 2 -25.716 21.624 -17.365 1 67.25 ? C4X FAD 350 B 1 HETATM 30 N N5 FAD . . . I 2 -26.011 20.514 -18.133 1 65.19 ? N5 FAD 350 B 1 HETATM 31 C C5X FAD . . . I 2 -26.592 19.326 -17.633 1 66.48 ? C5X FAD 350 B 1 HETATM 32 C C6 FAD . . . I 2 -26.874 18.154 -18.486 1 68.17 ? C6 FAD 350 B 1 HETATM 33 C C7 FAD . . . I 2 -27.427 16.993 -17.977 1 69.47 ? C7 FAD 350 B 1 HETATM 34 C C7M FAD . . . I 2 -27.726 15.775 -18.857 1 71.55 ? C7M FAD 350 B 1 HETATM 35 C C8 FAD . . . I 2 -27.699 16.91 -16.564 1 68.88 ? C8 FAD 350 B 1 HETATM 36 C C8M FAD . . . I 2 -28.269 15.669 -15.955 1 68.35 ? C8M FAD 350 B 1 HETATM 37 C C9 FAD . . . I 2 -27.422 17.999 -15.755 1 68.97 ? C9 FAD 350 B 1 HETATM 38 C C9A FAD . . . I 2 -26.858 19.265 -16.247 1 68.26 ? C9A FAD 350 B 1 HETATM 39 N N10 FAD . . . I 2 -26.592 20.468 -15.34 1 70.37 ? N10 FAD 350 B 1 HETATM 40 C C10 FAD . . . I 2 -26.049 21.612 -15.831 1 68.29 ? C10 FAD 350 B 1 HETATM 41 C C1' FAD . . . I 2 -26.922 20.408 -13.9 1 72.02 ? C1' FAD 350 B 1 HETATM 42 C C2' FAD . . . I 2 -25.773 20.191 -12.975 1 70.93 ? C2' FAD 350 B 1 HETATM 43 O O2' FAD . . . I 2 -25.207 18.943 -13.303 1 70.25 ? O2' FAD 350 B 1 HETATM 44 C C3' FAD . . . I 2 -26.386 20.05 -11.595 1 72.87 ? C3' FAD 350 B 1 HETATM 45 O O3' FAD . . . I 2 -27.242 21.153 -11.191 1 74.19 ? O3' FAD 350 B 1 HETATM 46 C C4' FAD . . . I 2 -25.302 19.849 -10.527 1 72.88 ? C4' FAD 350 B 1 HETATM 47 O O4' FAD . . . I 2 -24.168 19.04 -10.984 1 73.65 ? O4' FAD 350 B 1 HETATM 48 C C5' FAD . . . I 2 -25.939 19.125 -9.364 1 73.21 ? C5' FAD 350 B 1 HETATM 49 O O5' FAD . . . I 2 -24.907 19.308 -8.366 1 76 ? O5' FAD 350 B 1 HETATM 50 P P FAD . . . I 2 -24.639 18.628 -6.918 1 75.33 ? P FAD 350 B 1 HETATM 51 O O1P FAD . . . I 2 -23.242 18.739 -6.686 1 74.79 ? O1P FAD 350 B 1 HETATM 52 O O2P FAD . . . I 2 -25.869 19.135 -6.25 1 78.29 ? O2P FAD 350 B 1 HETATM 53 O O3P FAD . . . I 2 -24.948 17.109 -7.371 1 75.85 ? O3P FAD 350 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #