data_3ZNP # _model_server_result.job_id F0RhORqwfwHZOiANkOPyXQ _model_server_result.datetime_utc '2024-11-23 16:06:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3znp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":360}' # _entry.id 3ZNP # _exptl.entry_id 3ZNP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 162.142 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-HYDROXY-2H-CHROMEN-2-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ZNP _cell.length_a 84.069 _cell.length_b 84.069 _cell.length_c 189.163 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZNP _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,M 1 1,2 B,I,J,K,L,N 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -63.054333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H6 O3' _chem_comp.formula_weight 162.142 _chem_comp.id SE2 _chem_comp.mon_nstd_flag . _chem_comp.name 3-HYDROXY-2H-CHROMEN-2-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O8 C8 SE2 doub 381 n n C8 O1 SE2 sing 382 n n C8 C7 SE2 sing 383 n n O1 C11 SE2 sing 384 n n C11 C10 SE2 sing 385 n y C11 C4 SE2 doub 386 n y C10 C1 SE2 doub 387 n y C1 C2 SE2 sing 388 n y C2 C3 SE2 doub 389 n y C3 C4 SE2 sing 390 n y C4 C5 SE2 sing 391 n n C5 C7 SE2 doub 392 n n C7 O11 SE2 sing 393 n n C10 H10 SE2 sing 394 n n C1 H1 SE2 sing 395 n n C2 H2 SE2 sing 396 n n C3 H3 SE2 sing 397 n n C5 H5 SE2 sing 398 n n O11 H11 SE2 sing 399 n n # _atom_sites.entry_id 3ZNP _atom_sites.fract_transf_matrix[1][1] 0.011895 _atom_sites.fract_transf_matrix[1][2] 0.006868 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013735 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005286 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 350 350 FAD FAD . D 3 SE2 A 1 360 360 SE2 SE2 . E 4 GOL A 1 1341 1341 GOL GOL . F 4 GOL A 1 1342 1342 GOL GOL . G 4 GOL A 1 1343 1343 GOL GOL . H 4 GOL A 1 1344 1344 GOL GOL . I 2 FAD B 1 350 350 FAD FAD . J 4 GOL B 1 1341 1341 GOL GOL . K 4 GOL B 1 1342 1342 GOL GOL . L 4 GOL B 1 1343 1343 GOL GOL . M 5 HOH A 1 2001 2001 HOH HOH . M 5 HOH A 2 2002 2002 HOH HOH . M 5 HOH A 3 2003 2003 HOH HOH . M 5 HOH A 4 2004 2004 HOH HOH . M 5 HOH A 5 2005 2005 HOH HOH . M 5 HOH A 6 2006 2006 HOH HOH . M 5 HOH A 7 2007 2007 HOH HOH . M 5 HOH A 8 2008 2008 HOH HOH . M 5 HOH A 9 2009 2009 HOH HOH . M 5 HOH A 10 2010 2010 HOH HOH . M 5 HOH A 11 2011 2011 HOH HOH . M 5 HOH A 12 2012 2012 HOH HOH . M 5 HOH A 13 2013 2013 HOH HOH . M 5 HOH A 14 2014 2014 HOH HOH . M 5 HOH A 15 2015 2015 HOH HOH . M 5 HOH A 16 2016 2016 HOH HOH . M 5 HOH A 17 2017 2017 HOH HOH . M 5 HOH A 18 2018 2018 HOH HOH . M 5 HOH A 19 2019 2019 HOH HOH . M 5 HOH A 20 2020 2020 HOH HOH . M 5 HOH A 21 2021 2021 HOH HOH . M 5 HOH A 22 2022 2022 HOH HOH . M 5 HOH A 23 2023 2023 HOH HOH . M 5 HOH A 24 2024 2024 HOH HOH . M 5 HOH A 25 2025 2025 HOH HOH . M 5 HOH A 26 2026 2026 HOH HOH . M 5 HOH A 27 2027 2027 HOH HOH . M 5 HOH A 28 2028 2028 HOH HOH . M 5 HOH A 29 2029 2029 HOH HOH . M 5 HOH A 30 2030 2030 HOH HOH . M 5 HOH A 31 2031 2031 HOH HOH . M 5 HOH A 32 2032 2032 HOH HOH . M 5 HOH A 33 2033 2033 HOH HOH . M 5 HOH A 34 2034 2034 HOH HOH . M 5 HOH A 35 2035 2035 HOH HOH . M 5 HOH A 36 2036 2036 HOH HOH . M 5 HOH A 37 2037 2037 HOH HOH . M 5 HOH A 38 2038 2038 HOH HOH . M 5 HOH A 39 2039 2039 HOH HOH . M 5 HOH A 40 2040 2040 HOH HOH . M 5 HOH A 41 2041 2041 HOH HOH . M 5 HOH A 42 2042 2042 HOH HOH . M 5 HOH A 43 2043 2043 HOH HOH . M 5 HOH A 44 2044 2044 HOH HOH . M 5 HOH A 45 2045 2045 HOH HOH . M 5 HOH A 46 2046 2046 HOH HOH . M 5 HOH A 47 2047 2047 HOH HOH . M 5 HOH A 48 2048 2048 HOH HOH . M 5 HOH A 49 2049 2049 HOH HOH . M 5 HOH A 50 2050 2050 HOH HOH . M 5 HOH A 51 2051 2051 HOH HOH . M 5 HOH A 52 2052 2052 HOH HOH . M 5 HOH A 53 2053 2053 HOH HOH . M 5 HOH A 54 2054 2054 HOH HOH . M 5 HOH A 55 2055 2055 HOH HOH . M 5 HOH A 56 2056 2056 HOH HOH . M 5 HOH A 57 2057 2057 HOH HOH . M 5 HOH A 58 2058 2058 HOH HOH . M 5 HOH A 59 2059 2059 HOH HOH . M 5 HOH A 60 2060 2060 HOH HOH . M 5 HOH A 61 2061 2061 HOH HOH . M 5 HOH A 62 2062 2062 HOH HOH . M 5 HOH A 63 2063 2063 HOH HOH . M 5 HOH A 64 2064 2064 HOH HOH . M 5 HOH A 65 2065 2065 HOH HOH . M 5 HOH A 66 2066 2066 HOH HOH . M 5 HOH A 67 2067 2067 HOH HOH . M 5 HOH A 68 2068 2068 HOH HOH . M 5 HOH A 69 2069 2069 HOH HOH . M 5 HOH A 70 2070 2070 HOH HOH . N 5 HOH B 1 2001 2001 HOH HOH . N 5 HOH B 2 2002 2002 HOH HOH . N 5 HOH B 3 2003 2003 HOH HOH . N 5 HOH B 4 2004 2004 HOH HOH . N 5 HOH B 5 2005 2005 HOH HOH . N 5 HOH B 6 2006 2006 HOH HOH . N 5 HOH B 7 2007 2007 HOH HOH . N 5 HOH B 8 2008 2008 HOH HOH . N 5 HOH B 9 2009 2009 HOH HOH . N 5 HOH B 10 2010 2010 HOH HOH . N 5 HOH B 11 2011 2011 HOH HOH . N 5 HOH B 12 2012 2012 HOH HOH . N 5 HOH B 13 2013 2013 HOH HOH . N 5 HOH B 14 2014 2014 HOH HOH . N 5 HOH B 15 2015 2015 HOH HOH . N 5 HOH B 16 2016 2016 HOH HOH . N 5 HOH B 17 2017 2017 HOH HOH . N 5 HOH B 18 2018 2018 HOH HOH . N 5 HOH B 19 2019 2019 HOH HOH . N 5 HOH B 20 2020 2020 HOH HOH . N 5 HOH B 21 2021 2021 HOH HOH . N 5 HOH B 22 2022 2022 HOH HOH . N 5 HOH B 23 2023 2023 HOH HOH . N 5 HOH B 24 2024 2024 HOH HOH . N 5 HOH B 25 2025 2025 HOH HOH . N 5 HOH B 26 2026 2026 HOH HOH . N 5 HOH B 27 2027 2027 HOH HOH . N 5 HOH B 28 2028 2028 HOH HOH . N 5 HOH B 29 2029 2029 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O8 SE2 . . . D 3 -4.558 -5.004 -13.342 1 59.79 ? O8 SE2 360 A 1 HETATM 2 C C8 SE2 . . . D 3 -4.698 -5.952 -14.14 1 64.37 ? C8 SE2 360 A 1 HETATM 3 O O1 SE2 . . . D 3 -3.929 -6.033 -15.274 1 67.73 ? O1 SE2 360 A 1 HETATM 4 C C11 SE2 . . . D 3 -4.081 -7.081 -16.144 1 70.67 ? C11 SE2 360 A 1 HETATM 5 C C10 SE2 . . . D 3 -3.309 -7.176 -17.296 1 73.06 ? C10 SE2 360 A 1 HETATM 6 C C1 SE2 . . . D 3 -3.49 -8.253 -18.167 1 71.85 ? C1 SE2 360 A 1 HETATM 7 C C2 SE2 . . . D 3 -4.436 -9.249 -17.909 1 71.94 ? C2 SE2 360 A 1 HETATM 8 C C3 SE2 . . . D 3 -5.232 -9.194 -16.767 1 72.79 ? C3 SE2 360 A 1 HETATM 9 C C4 SE2 . . . D 3 -5.09 -8.139 -15.868 1 70.55 ? C4 SE2 360 A 1 HETATM 10 C C5 SE2 . . . D 3 -5.874 -8.061 -14.725 1 66.39 ? C5 SE2 360 A 1 HETATM 11 C C7 SE2 . . . D 3 -5.709 -6.998 -13.848 1 65.62 ? C7 SE2 360 A 1 HETATM 12 O O11 SE2 . . . D 3 -6.464 -6.908 -12.719 1 65.65 ? O11 SE2 360 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #