data_3ZOC # _model_server_result.job_id IjxbPt8dsVrLoufabdL4fg _model_server_result.datetime_utc '2024-11-28 11:24:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zoc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":173}' # _entry.id 3ZOC # _exptl.entry_id 3ZOC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ZOC _cell.length_a 46.321 _cell.length_b 46.321 _cell.length_c 268.77 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZOC _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -23.1605 -40.115163 -44.795 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 3ZOC _atom_sites.fract_transf_matrix[1][1] 0.021588 _atom_sites.fract_transf_matrix[1][2] 0.012464 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024928 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 173 173 FMN FMN . C 3 HBA A 1 1173 1173 HBA HBA . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 -19.738 -21.449 -10.302 1 15.57 ? N1 FMN 173 A 1 HETATM 2 C C2 FMN . . . B 2 -20.396 -20.633 -11.151 1 15.51 ? C2 FMN 173 A 1 HETATM 3 O O2 FMN . . . B 2 -21.508 -20.185 -10.795 1 17.01 ? O2 FMN 173 A 1 HETATM 4 N N3 FMN . . . B 2 -19.894 -20.28 -12.357 1 15.8 ? N3 FMN 173 A 1 HETATM 5 C C4 FMN . . . B 2 -18.666 -20.697 -12.764 1 15.27 ? C4 FMN 173 A 1 HETATM 6 O O4 FMN . . . B 2 -18.193 -20.402 -13.887 1 15.82 ? O4 FMN 173 A 1 HETATM 7 C C4A FMN . . . B 2 -17.893 -21.607 -11.894 1 15.95 ? C4A FMN 173 A 1 HETATM 8 N N5 FMN . . . B 2 -16.686 -22.11 -12.254 1 16.36 ? N5 FMN 173 A 1 HETATM 9 C C5A FMN . . . B 2 -15.968 -22.904 -11.429 1 16.21 ? C5A FMN 173 A 1 HETATM 10 C C6 FMN . . . B 2 -14.73 -23.389 -11.822 1 14.85 ? C6 FMN 173 A 1 HETATM 11 C C7 FMN . . . B 2 -13.985 -24.228 -10.99 1 15.49 ? C7 FMN 173 A 1 HETATM 12 C C7M FMN . . . B 2 -12.604 -24.692 -11.427 1 15.07 ? C7M FMN 173 A 1 HETATM 13 C C8 FMN . . . B 2 -14.537 -24.627 -9.677 1 15.54 ? C8 FMN 173 A 1 HETATM 14 C C8M FMN . . . B 2 -13.732 -25.532 -8.769 1 15.88 ? C8M FMN 173 A 1 HETATM 15 C C9 FMN . . . B 2 -15.793 -24.146 -9.284 1 16.72 ? C9 FMN 173 A 1 HETATM 16 C C9A FMN . . . B 2 -16.541 -23.29 -10.108 1 16.56 ? C9A FMN 173 A 1 HETATM 17 N N10 FMN . . . B 2 -17.816 -22.759 -9.744 1 17.21 ? N10 FMN 173 A 1 HETATM 18 C C10 FMN . . . B 2 -18.521 -21.95 -10.612 1 15.66 ? C10 FMN 173 A 1 HETATM 19 C C1' FMN . . . B 2 -18.465 -23.069 -8.485 1 15.7 ? C1' FMN 173 A 1 HETATM 20 C C2' FMN . . . B 2 -18.03 -22.076 -7.445 1 16.47 ? C2' FMN 173 A 1 HETATM 21 O O2' FMN . . . B 2 -16.686 -21.599 -7.632 1 14.29 ? O2' FMN 173 A 1 HETATM 22 C C3' FMN . . . B 2 -18.202 -22.813 -6.112 1 16.79 ? C3' FMN 173 A 1 HETATM 23 O O3' FMN . . . B 2 -19.518 -23.374 -6.102 1 19.67 ? O3' FMN 173 A 1 HETATM 24 C C4' FMN . . . B 2 -18.07 -21.904 -4.913 1 17.99 ? C4' FMN 173 A 1 HETATM 25 O O4' FMN . . . B 2 -18.138 -22.765 -3.796 1 19.02 ? O4' FMN 173 A 1 HETATM 26 C C5' FMN . . . B 2 -19.175 -20.859 -4.73 1 18.58 ? C5' FMN 173 A 1 HETATM 27 O O5' FMN . . . B 2 -18.679 -20.043 -3.683 1 18.83 ? O5' FMN 173 A 1 HETATM 28 P P FMN . . . B 2 -19.501 -18.804 -3.05 1 19.3 ? P FMN 173 A 1 HETATM 29 O O1P FMN . . . B 2 -20.771 -19.451 -2.605 1 19.42 ? O1P FMN 173 A 1 HETATM 30 O O2P FMN . . . B 2 -19.627 -17.789 -4.167 1 19.81 ? O2P FMN 173 A 1 HETATM 31 O O3P FMN . . . B 2 -18.636 -18.24 -1.965 1 20.01 ? O3P FMN 173 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #