data_3ZOG # _model_server_result.job_id Lsjw5LJLdJuuV-FEeBCmuQ _model_server_result.datetime_utc '2025-01-25 11:42:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":173}' # _entry.id 3ZOG # _exptl.entry_id 3ZOG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ZOG _cell.length_a 46.06 _cell.length_b 46.06 _cell.length_c 268.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZOG _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_664 -y+1,-x+1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 23.03 39.88913 -44.766667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 98 n n N1 C10 FMN doub 99 n n C2 O2 FMN doub 100 n n C2 N3 FMN sing 101 n n N3 C4 FMN sing 102 n n N3 HN3 FMN sing 103 n n C4 O4 FMN doub 104 n n C4 C4A FMN sing 105 n n C4A N5 FMN doub 106 n n C4A C10 FMN sing 107 n n N5 C5A FMN sing 108 n n C5A C6 FMN doub 109 n y C5A C9A FMN sing 110 n y C6 C7 FMN sing 111 n y C6 H6 FMN sing 112 n n C7 C7M FMN sing 113 n n C7 C8 FMN doub 114 n y C7M HM71 FMN sing 115 n n C7M HM72 FMN sing 116 n n C7M HM73 FMN sing 117 n n C8 C8M FMN sing 118 n n C8 C9 FMN sing 119 n y C8M HM81 FMN sing 120 n n C8M HM82 FMN sing 121 n n C8M HM83 FMN sing 122 n n C9 C9A FMN doub 123 n y C9 H9 FMN sing 124 n n C9A N10 FMN sing 125 n n N10 C10 FMN sing 126 n n N10 C1' FMN sing 127 n n C1' C2' FMN sing 128 n n C1' "H1'1" FMN sing 129 n n C1' "H1'2" FMN sing 130 n n C2' O2' FMN sing 131 n n C2' C3' FMN sing 132 n n C2' H2' FMN sing 133 n n O2' HO2' FMN sing 134 n n C3' O3' FMN sing 135 n n C3' C4' FMN sing 136 n n C3' H3' FMN sing 137 n n O3' HO3' FMN sing 138 n n C4' O4' FMN sing 139 n n C4' C5' FMN sing 140 n n C4' H4' FMN sing 141 n n O4' HO4' FMN sing 142 n n C5' O5' FMN sing 143 n n C5' "H5'1" FMN sing 144 n n C5' "H5'2" FMN sing 145 n n O5' P FMN sing 146 n n P O1P FMN doub 147 n n P O2P FMN sing 148 n n P O3P FMN sing 149 n n O2P HOP2 FMN sing 150 n n O3P HOP3 FMN sing 151 n n # _atom_sites.entry_id 3ZOG _atom_sites.fract_transf_matrix[1][1] 0.021711 _atom_sites.fract_transf_matrix[1][2] 0.012535 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025069 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003723 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 173 173 FMN FMN . C 3 A2Q A 1 200 200 A2Q A2Q . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 19.502 21.406 -10.377 1 15.76 ? N1 FMN 173 A 1 HETATM 2 C C2 FMN . . . B 2 20.157 20.53 -11.219 1 16.34 ? C2 FMN 173 A 1 HETATM 3 O O2 FMN . . . B 2 21.231 20.049 -10.881 1 16.9 ? O2 FMN 173 A 1 HETATM 4 N N3 FMN . . . B 2 19.605 20.169 -12.454 1 15.23 ? N3 FMN 173 A 1 HETATM 5 C C4 FMN . . . B 2 18.368 20.689 -12.836 1 15.66 ? C4 FMN 173 A 1 HETATM 6 O O4 FMN . . . B 2 17.913 20.346 -13.93 1 15.43 ? O4 FMN 173 A 1 HETATM 7 C C4A FMN . . . B 2 17.714 21.576 -11.985 1 15.54 ? C4A FMN 173 A 1 HETATM 8 N N5 FMN . . . B 2 16.49 22.103 -12.344 1 15.51 ? N5 FMN 173 A 1 HETATM 9 C C5A FMN . . . B 2 15.807 22.889 -11.455 1 15.42 ? C5A FMN 173 A 1 HETATM 10 C C6 FMN . . . B 2 14.539 23.307 -11.818 1 15.75 ? C6 FMN 173 A 1 HETATM 11 C C7 FMN . . . B 2 13.846 24.102 -10.929 1 15.46 ? C7 FMN 173 A 1 HETATM 12 C C7M FMN . . . B 2 12.441 24.559 -11.335 1 14.92 ? C7M FMN 173 A 1 HETATM 13 C C8 FMN . . . B 2 14.404 24.487 -9.703 1 15.66 ? C8 FMN 173 A 1 HETATM 14 C C8M FMN . . . B 2 13.615 25.367 -8.745 1 17.13 ? C8M FMN 173 A 1 HETATM 15 C C9 FMN . . . B 2 15.677 24.065 -9.328 1 15.46 ? C9 FMN 173 A 1 HETATM 16 C C9A FMN . . . B 2 16.369 23.254 -10.221 1 15.52 ? C9A FMN 173 A 1 HETATM 17 N N10 FMN . . . B 2 17.649 22.784 -9.901 1 15.71 ? N10 FMN 173 A 1 HETATM 18 C C10 FMN . . . B 2 18.282 21.932 -10.763 1 15.67 ? C10 FMN 173 A 1 HETATM 19 C C1' FMN . . . B 2 18.235 23.063 -8.563 1 16.12 ? C1' FMN 173 A 1 HETATM 20 C C2' FMN . . . B 2 17.94 21.99 -7.507 1 16.74 ? C2' FMN 173 A 1 HETATM 21 O O2' FMN . . . B 2 16.587 21.489 -7.591 1 15.91 ? O2' FMN 173 A 1 HETATM 22 C C3' FMN . . . B 2 18.191 22.62 -6.118 1 18.39 ? C3' FMN 173 A 1 HETATM 23 O O3' FMN . . . B 2 19.589 22.951 -6.072 1 17.94 ? O3' FMN 173 A 1 HETATM 24 C C4' FMN . . . B 2 17.827 21.697 -4.935 1 19.03 ? C4' FMN 173 A 1 HETATM 25 O O4' FMN . . . B 2 17.841 22.457 -3.699 1 20.72 ? O4' FMN 173 A 1 HETATM 26 C C5' FMN . . . B 2 18.782 20.505 -4.782 1 19.19 ? C5' FMN 173 A 1 HETATM 27 O O5' FMN . . . B 2 18.454 19.871 -3.586 1 19.26 ? O5' FMN 173 A 1 HETATM 28 P P FMN . . . B 2 19.257 18.648 -3.094 1 20.51 ? P FMN 173 A 1 HETATM 29 O O1P FMN . . . B 2 18.421 18.018 -1.899 1 21.23 ? O1P FMN 173 A 1 HETATM 30 O O2P FMN . . . B 2 20.614 19.318 -2.577 1 19.87 ? O2P FMN 173 A 1 HETATM 31 O O3P FMN . . . B 2 19.554 17.629 -4.131 1 20.51 ? O3P FMN 173 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #