data_3ZP3
#
_model_server_result.job_id            1MvG5mI0tx4H-CVAvMvLFQ 
_model_server_result.datetime_utc      '2024-11-23 09:08:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3zp3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1326}' 
#
_entry.id    3ZP3 
#
_exptl.entry_id    3ZP3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              309.27 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-acetyl-alpha-neuraminic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3ZP3 
_cell.length_a            101.07 
_cell.length_b            101.07 
_cell.length_c            449.21 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ZP3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -50.535 87.529188 0 
3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -101.07 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 20 E CYS 8 1_555 B SG CYS 137 F CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
disulf ? disulf2 A SG CYS 58 E CYS 46 1_555 A SG CYS 290 E CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf3 A SG CYS 71 E CYS 59 1_555 A SG CYS 83 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.513 ? 
disulf ? disulf4 A SG CYS 106 E CYS 94 1_555 A SG CYS 151 E CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? 
disulf ? disulf5 A SG CYS 294 E CYS 282 1_555 A SG CYS 318 E CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf6 B SG CYS 144 F CYS 144 1_555 B SG CYS 148 F CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
covale ? covale1 A ND2 ASN 27 E ASN 15 1_555 E C1 NAG . F NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale2 A ND2 ASN 39 E ASN 27 1_555 F C1 NAG . F NAG 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? 
#
_chem_comp.formula           'C11 H19 N O9' 
_chem_comp.formula_weight    309.27 
_chem_comp.id                SIA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-acetyl-alpha-neuraminic acid' 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     'N-acetylneuraminic acid;sialic acid;alpha-sialic acid;O-SIALIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 SIA sing 344 n n 
C1 O1A SIA doub 345 n n 
C1 O1B SIA sing 346 n n 
C2 C3 SIA sing 347 n n 
C2 O2 SIA sing 348 n n 
C2 O6 SIA sing 349 n n 
C3 C4 SIA sing 350 n n 
C3 H32 SIA sing 351 n n 
C3 H31 SIA sing 352 n n 
C4 C5 SIA sing 353 n n 
C4 O4 SIA sing 354 n n 
C4 H4 SIA sing 355 n n 
C5 C6 SIA sing 356 n n 
C5 N5 SIA sing 357 n n 
C5 H5 SIA sing 358 n n 
C6 C7 SIA sing 359 n n 
C6 O6 SIA sing 360 n n 
C6 H6 SIA sing 361 n n 
C7 C8 SIA sing 362 n n 
C7 O7 SIA sing 363 n n 
C7 H7 SIA sing 364 n n 
C8 C9 SIA sing 365 n n 
C8 O8 SIA sing 366 n n 
C8 H8 SIA sing 367 n n 
C9 O9 SIA sing 368 n n 
C9 H92 SIA sing 369 n n 
C9 H91 SIA sing 370 n n 
C10 C11 SIA sing 371 n n 
C10 N5 SIA sing 372 n n 
C10 O10 SIA doub 373 n n 
C11 H111 SIA sing 374 n n 
C11 H113 SIA sing 375 n n 
C11 H112 SIA sing 376 n n 
N5 HN5 SIA sing 377 n n 
O1B HO1B SIA sing 378 n n 
O2 HO2 SIA sing 379 n n 
O4 HO4 SIA sing 380 n n 
O7 HO7 SIA sing 381 n n 
O8 HO8 SIA sing 382 n n 
O9 HO9 SIA sing 383 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
SIA DNeup5Aca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
SIA 'N-acetyl-a-D-neuraminic acid' 'COMMON NAME' GMML 1 
SIA a-D-Neup5Ac 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
SIA Neu5Ac 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3ZP3 
_atom_sites.fract_transf_matrix[1][1]    0.009894 
_atom_sites.fract_transf_matrix[1][2]    0.005712 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011425 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002226 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SIA E 1 1326 1326 SIA SIA . 
D 4 GAL E 1 1327 1327 GAL GAL . 
E 5 NAG F 1 401 401 NAG NAG . 
F 5 NAG F 1 411 411 NAG NAG . 
G 6 HOH E 1 2001 2001 HOH HOH . 
G 6 HOH E 2 2002 2002 HOH HOH . 
G 6 HOH E 3 2003 2003 HOH HOH . 
G 6 HOH E 4 2004 2004 HOH HOH . 
G 6 HOH E 5 2005 2005 HOH HOH . 
G 6 HOH E 6 2006 2006 HOH HOH . 
G 6 HOH E 7 2007 2007 HOH HOH . 
G 6 HOH E 8 2008 2008 HOH HOH . 
G 6 HOH E 9 2009 2009 HOH HOH . 
G 6 HOH E 10 2010 2010 HOH HOH . 
G 6 HOH E 11 2011 2011 HOH HOH . 
G 6 HOH E 12 2012 2012 HOH HOH . 
G 6 HOH E 13 2013 2013 HOH HOH . 
G 6 HOH E 14 2014 2014 HOH HOH . 
G 6 HOH E 15 2015 2015 HOH HOH . 
G 6 HOH E 16 2016 2016 HOH HOH . 
G 6 HOH E 17 2017 2017 HOH HOH . 
G 6 HOH E 18 2018 2018 HOH HOH . 
G 6 HOH E 19 2019 2019 HOH HOH . 
G 6 HOH E 20 2020 2020 HOH HOH . 
G 6 HOH E 21 2021 2021 HOH HOH . 
G 6 HOH E 22 2022 2022 HOH HOH . 
G 6 HOH E 23 2023 2023 HOH HOH . 
G 6 HOH E 24 2024 2024 HOH HOH . 
G 6 HOH E 25 2025 2025 HOH HOH . 
G 6 HOH E 26 2026 2026 HOH HOH . 
G 6 HOH E 27 2027 2027 HOH HOH . 
G 6 HOH E 28 2028 2028 HOH HOH . 
G 6 HOH E 29 2029 2029 HOH HOH . 
G 6 HOH E 30 2030 2030 HOH HOH . 
G 6 HOH E 31 2031 2031 HOH HOH . 
G 6 HOH E 32 2032 2032 HOH HOH . 
G 6 HOH E 33 2033 2033 HOH HOH . 
G 6 HOH E 34 2034 2034 HOH HOH . 
G 6 HOH E 35 2035 2035 HOH HOH . 
G 6 HOH E 36 2036 2036 HOH HOH . 
H 6 HOH F 1 2001 2001 HOH HOH . 
H 6 HOH F 2 2002 2002 HOH HOH . 
H 6 HOH F 3 2003 2003 HOH HOH . 
H 6 HOH F 4 2004 2004 HOH HOH . 
H 6 HOH F 5 2005 2005 HOH HOH . 
H 6 HOH F 6 2006 2006 HOH HOH . 
H 6 HOH F 7 2007 2007 HOH HOH . 
H 6 HOH F 8 2008 2008 HOH HOH . 
H 6 HOH F 9 2009 2009 HOH HOH . 
H 6 HOH F 10 2010 2010 HOH HOH . 
H 6 HOH F 11 2011 2011 HOH HOH . 
H 6 HOH F 12 2012 2012 HOH HOH . 
H 6 HOH F 13 2013 2013 HOH HOH . 
H 6 HOH F 14 2014 2014 HOH HOH . 
H 6 HOH F 15 2015 2015 HOH HOH . 
H 6 HOH F 16 2016 2016 HOH HOH . 
H 6 HOH F 17 2017 2017 HOH HOH . 
H 6 HOH F 18 2018 2018 HOH HOH . 
H 6 HOH F 19 2019 2019 HOH HOH . 
H 6 HOH F 20 2020 2020 HOH HOH . 
H 6 HOH F 21 2021 2021 HOH HOH . 
H 6 HOH F 22 2022 2022 HOH HOH . 
H 6 HOH F 23 2023 2023 HOH HOH . 
H 6 HOH F 24 2024 2024 HOH HOH . 
H 6 HOH F 25 2025 2025 HOH HOH . 
H 6 HOH F 26 2026 2026 HOH HOH . 
H 6 HOH F 27 2027 2027 HOH HOH . 
H 6 HOH F 28 2028 2028 HOH HOH . 
H 6 HOH F 29 2029 2029 HOH HOH . 
H 6 HOH F 30 2030 2030 HOH HOH . 
H 6 HOH F 31 2031 2031 HOH HOH . 
H 6 HOH F 32 2032 2032 HOH HOH . 
H 6 HOH F 33 2033 2033 HOH HOH . 
H 6 HOH F 34 2034 2034 HOH HOH . 
H 6 HOH F 35 2035 2035 HOH HOH . 
H 6 HOH F 36 2036 2036 HOH HOH . 
H 6 HOH F 37 2037 2037 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SIA . . . C 3 -21.378 29.515 96.385 1 120.04 ? C1 SIA 1326 E 1 
HETATM 2 C C2 SIA . . . C 3 -21.47 29.37 97.882 1 120.52 ? C2 SIA 1326 E 1 
HETATM 3 C C3 SIA . . . C 3 -20.769 30.547 98.58 1 120.7 ? C3 SIA 1326 E 1 
HETATM 4 C C4 SIA . . . C 3 -21.632 31.814 98.617 1 120.73 ? C4 SIA 1326 E 1 
HETATM 5 C C5 SIA . . . C 3 -23.023 31.517 99.186 1 120.41 ? C5 SIA 1326 E 1 
HETATM 6 C C6 SIA . . . C 3 -23.685 30.371 98.413 1 120.23 ? C6 SIA 1326 E 1 
HETATM 7 C C7 SIA . . . C 3 -25.039 29.992 99.031 1 120.24 ? C7 SIA 1326 E 1 
HETATM 8 C C8 SIA . . . C 3 -25.911 29.116 98.123 1 120.5 ? C8 SIA 1326 E 1 
HETATM 9 C C9 SIA . . . C 3 -27.393 29.292 98.448 1 120.21 ? C9 SIA 1326 E 1 
HETATM 10 C C10 SIA . . . C 3 -24.576 33.325 99.832 1 119.91 ? C10 SIA 1326 E 1 
HETATM 11 C C11 SIA . . . C 3 -25.346 34.513 99.339 1 119.75 ? C11 SIA 1326 E 1 
HETATM 12 N N5 SIA . . . C 3 -23.84 32.697 98.908 1 120.21 ? N5 SIA 1326 E 1 
HETATM 13 O O1A SIA . . . C 3 -20.353 30.052 95.916 1 119.83 ? O1A SIA 1326 E 1 
HETATM 14 O O1B SIA . . . C 3 -22.311 29.081 95.676 1 119.5 ? O1B SIA 1326 E 1 
HETATM 15 O O4 SIA . . . C 3 -20.973 32.842 99.374 1 120.44 ? O4 SIA 1326 E 1 
HETATM 16 O O6 SIA . . . C 3 -22.832 29.211 98.338 1 120.53 ? O6 SIA 1326 E 1 
HETATM 17 O O7 SIA . . . C 3 -24.836 29.33 100.287 1 119.89 ? O7 SIA 1326 E 1 
HETATM 18 O O8 SIA . . . C 3 -25.691 29.425 96.738 1 120.9 ? O8 SIA 1326 E 1 
HETATM 19 O O9 SIA . . . C 3 -28.207 28.608 97.484 1 119.56 ? O9 SIA 1326 E 1 
HETATM 20 O O10 SIA . . . C 3 -24.632 32.972 100.998 1 119.86 ? O10 SIA 1326 E 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           20 
#