data_3ZP3 # _model_server_result.job_id -rtZ5AjiXZRroXxXSRl77g _model_server_result.datetime_utc '2024-10-12 15:24:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zp3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":411}' # _entry.id 3ZP3 # _exptl.entry_id 3ZP3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ZP3 _cell.length_a 101.07 _cell.length_b 101.07 _cell.length_c 449.21 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZP3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -50.535 87.529188 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -101.07 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 20 E CYS 8 1_555 B SG CYS 137 F CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? disulf ? disulf2 A SG CYS 58 E CYS 46 1_555 A SG CYS 290 E CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf3 A SG CYS 71 E CYS 59 1_555 A SG CYS 83 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.513 ? disulf ? disulf4 A SG CYS 106 E CYS 94 1_555 A SG CYS 151 E CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? disulf ? disulf5 A SG CYS 294 E CYS 282 1_555 A SG CYS 318 E CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf6 B SG CYS 144 F CYS 144 1_555 B SG CYS 148 F CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? covale ? covale1 A ND2 ASN 27 E ASN 15 1_555 E C1 NAG . F NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 A ND2 ASN 39 E ASN 27 1_555 F C1 NAG . F NAG 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3ZP3 _atom_sites.fract_transf_matrix[1][1] 0.009894 _atom_sites.fract_transf_matrix[1][2] 0.005712 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011425 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SIA E 1 1326 1326 SIA SIA . D 4 GAL E 1 1327 1327 GAL GAL . E 5 NAG F 1 401 401 NAG NAG . F 5 NAG F 1 411 411 NAG NAG . G 6 HOH E 1 2001 2001 HOH HOH . G 6 HOH E 2 2002 2002 HOH HOH . G 6 HOH E 3 2003 2003 HOH HOH . G 6 HOH E 4 2004 2004 HOH HOH . G 6 HOH E 5 2005 2005 HOH HOH . G 6 HOH E 6 2006 2006 HOH HOH . G 6 HOH E 7 2007 2007 HOH HOH . G 6 HOH E 8 2008 2008 HOH HOH . G 6 HOH E 9 2009 2009 HOH HOH . G 6 HOH E 10 2010 2010 HOH HOH . G 6 HOH E 11 2011 2011 HOH HOH . G 6 HOH E 12 2012 2012 HOH HOH . G 6 HOH E 13 2013 2013 HOH HOH . G 6 HOH E 14 2014 2014 HOH HOH . G 6 HOH E 15 2015 2015 HOH HOH . G 6 HOH E 16 2016 2016 HOH HOH . G 6 HOH E 17 2017 2017 HOH HOH . G 6 HOH E 18 2018 2018 HOH HOH . G 6 HOH E 19 2019 2019 HOH HOH . G 6 HOH E 20 2020 2020 HOH HOH . G 6 HOH E 21 2021 2021 HOH HOH . G 6 HOH E 22 2022 2022 HOH HOH . G 6 HOH E 23 2023 2023 HOH HOH . G 6 HOH E 24 2024 2024 HOH HOH . G 6 HOH E 25 2025 2025 HOH HOH . G 6 HOH E 26 2026 2026 HOH HOH . G 6 HOH E 27 2027 2027 HOH HOH . G 6 HOH E 28 2028 2028 HOH HOH . G 6 HOH E 29 2029 2029 HOH HOH . G 6 HOH E 30 2030 2030 HOH HOH . G 6 HOH E 31 2031 2031 HOH HOH . G 6 HOH E 32 2032 2032 HOH HOH . G 6 HOH E 33 2033 2033 HOH HOH . G 6 HOH E 34 2034 2034 HOH HOH . G 6 HOH E 35 2035 2035 HOH HOH . G 6 HOH E 36 2036 2036 HOH HOH . H 6 HOH F 1 2001 2001 HOH HOH . H 6 HOH F 2 2002 2002 HOH HOH . H 6 HOH F 3 2003 2003 HOH HOH . H 6 HOH F 4 2004 2004 HOH HOH . H 6 HOH F 5 2005 2005 HOH HOH . H 6 HOH F 6 2006 2006 HOH HOH . H 6 HOH F 7 2007 2007 HOH HOH . H 6 HOH F 8 2008 2008 HOH HOH . H 6 HOH F 9 2009 2009 HOH HOH . H 6 HOH F 10 2010 2010 HOH HOH . H 6 HOH F 11 2011 2011 HOH HOH . H 6 HOH F 12 2012 2012 HOH HOH . H 6 HOH F 13 2013 2013 HOH HOH . H 6 HOH F 14 2014 2014 HOH HOH . H 6 HOH F 15 2015 2015 HOH HOH . H 6 HOH F 16 2016 2016 HOH HOH . H 6 HOH F 17 2017 2017 HOH HOH . H 6 HOH F 18 2018 2018 HOH HOH . H 6 HOH F 19 2019 2019 HOH HOH . H 6 HOH F 20 2020 2020 HOH HOH . H 6 HOH F 21 2021 2021 HOH HOH . H 6 HOH F 22 2022 2022 HOH HOH . H 6 HOH F 23 2023 2023 HOH HOH . H 6 HOH F 24 2024 2024 HOH HOH . H 6 HOH F 25 2025 2025 HOH HOH . H 6 HOH F 26 2026 2026 HOH HOH . H 6 HOH F 27 2027 2027 HOH HOH . H 6 HOH F 28 2028 2028 HOH HOH . H 6 HOH F 29 2029 2029 HOH HOH . H 6 HOH F 30 2030 2030 HOH HOH . H 6 HOH F 31 2031 2031 HOH HOH . H 6 HOH F 32 2032 2032 HOH HOH . H 6 HOH F 33 2033 2033 HOH HOH . H 6 HOH F 34 2034 2034 HOH HOH . H 6 HOH F 35 2035 2035 HOH HOH . H 6 HOH F 36 2036 2036 HOH HOH . H 6 HOH F 37 2037 2037 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 5 -30.277 18.581 31.88 1 77.39 ? C1 NAG 411 F 1 HETATM 2 C C2 NAG . . . F 5 -30.378 17.155 32.391 1 77.94 ? C2 NAG 411 F 1 HETATM 3 C C3 NAG . . . F 5 -29.73 17.026 33.758 1 78.39 ? C3 NAG 411 F 1 HETATM 4 C C4 NAG . . . F 5 -28.313 17.543 33.694 1 79.01 ? C4 NAG 411 F 1 HETATM 5 C C5 NAG . . . F 5 -28.329 18.974 33.189 1 78.95 ? C5 NAG 411 F 1 HETATM 6 C C6 NAG . . . F 5 -26.916 19.528 33.101 1 79.06 ? C6 NAG 411 F 1 HETATM 7 C C7 NAG . . . F 5 -32.343 16.018 31.555 1 77.26 ? C7 NAG 411 F 1 HETATM 8 C C8 NAG . . . F 5 -33.627 15.361 31.954 1 77.06 ? C8 NAG 411 F 1 HETATM 9 N N2 NAG . . . F 5 -31.765 16.764 32.482 1 78.07 ? N2 NAG 411 F 1 HETATM 10 O O3 NAG . . . F 5 -29.676 15.66 34.16 1 78.24 ? O3 NAG 411 F 1 HETATM 11 O O4 NAG . . . F 5 -27.744 17.462 34.999 1 80.14 ? O4 NAG 411 F 1 HETATM 12 O O5 NAG . . . F 5 -28.913 18.988 31.892 1 78.17 ? O5 NAG 411 F 1 HETATM 13 O O6 NAG . . . F 5 -26.799 20.687 33.928 1 78.12 ? O6 NAG 411 F 1 HETATM 14 O O7 NAG . . . F 5 -31.866 15.877 30.45 1 76.46 ? O7 NAG 411 F 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #