data_3ZPA
#
_model_server_result.job_id            15OJKFQsTYZypomMpU4AGw 
_model_server_result.datetime_utc      '2024-11-23 22:30:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3zpa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1326}' 
#
_entry.id    3ZPA 
#
_exptl.entry_id    3ZPA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3ZPA 
_cell.length_a            101 
_cell.length_b            101 
_cell.length_c            448.24 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ZPA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -50.5 87.468566 0 
3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -101 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 20 E CYS 8 1_555 B SG CYS 137 F CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
disulf ? disulf2 A SG CYS 58 E CYS 46 1_555 A SG CYS 290 E CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf3 A SG CYS 71 E CYS 59 1_555 A SG CYS 83 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf4 A SG CYS 106 E CYS 94 1_555 A SG CYS 151 E CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
disulf ? disulf5 A SG CYS 294 E CYS 282 1_555 A SG CYS 318 E CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf6 B SG CYS 144 F CYS 144 1_555 B SG CYS 148 F CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.648 ? 
covale ? covale1 A ND2 ASN 181 E ASN 169 1_555 C C1 NAG . E NAG 1326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.274 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3ZPA 
_atom_sites.fract_transf_matrix[1][1]    0.009901 
_atom_sites.fract_transf_matrix[1][2]    0.005716 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011433 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002231 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG E 1 1326 1326 NAG NAG . 
D 4 HOH E 1 2001 2001 HOH HOH . 
D 4 HOH E 2 2002 2002 HOH HOH . 
D 4 HOH E 3 2003 2003 HOH HOH . 
D 4 HOH E 4 2004 2004 HOH HOH . 
D 4 HOH E 5 2005 2005 HOH HOH . 
D 4 HOH E 6 2006 2006 HOH HOH . 
D 4 HOH E 7 2007 2007 HOH HOH . 
D 4 HOH E 8 2008 2008 HOH HOH . 
D 4 HOH E 9 2009 2009 HOH HOH . 
D 4 HOH E 10 2010 2010 HOH HOH . 
D 4 HOH E 11 2011 2011 HOH HOH . 
D 4 HOH E 12 2012 2012 HOH HOH . 
D 4 HOH E 13 2013 2013 HOH HOH . 
D 4 HOH E 14 2014 2014 HOH HOH . 
D 4 HOH E 15 2015 2015 HOH HOH . 
D 4 HOH E 16 2016 2016 HOH HOH . 
D 4 HOH E 17 2017 2017 HOH HOH . 
D 4 HOH E 18 2018 2018 HOH HOH . 
D 4 HOH E 19 2019 2019 HOH HOH . 
D 4 HOH E 20 2020 2020 HOH HOH . 
D 4 HOH E 21 2021 2021 HOH HOH . 
D 4 HOH E 22 2022 2022 HOH HOH . 
D 4 HOH E 23 2023 2023 HOH HOH . 
D 4 HOH E 24 2024 2024 HOH HOH . 
D 4 HOH E 25 2025 2025 HOH HOH . 
D 4 HOH E 26 2026 2026 HOH HOH . 
D 4 HOH E 27 2027 2027 HOH HOH . 
D 4 HOH E 28 2028 2028 HOH HOH . 
D 4 HOH E 29 2029 2029 HOH HOH . 
D 4 HOH E 30 2030 2030 HOH HOH . 
D 4 HOH E 31 2031 2031 HOH HOH . 
D 4 HOH E 32 2032 2032 HOH HOH . 
D 4 HOH E 33 2033 2033 HOH HOH . 
D 4 HOH E 34 2034 2034 HOH HOH . 
D 4 HOH E 35 2035 2035 HOH HOH . 
D 4 HOH E 36 2036 2036 HOH HOH . 
D 4 HOH E 37 2037 2037 HOH HOH . 
D 4 HOH E 38 2038 2038 HOH HOH . 
D 4 HOH E 39 2040 2040 HOH HOH . 
E 4 HOH F 1 2001 2001 HOH HOH . 
E 4 HOH F 2 2002 2002 HOH HOH . 
E 4 HOH F 3 2003 2003 HOH HOH . 
E 4 HOH F 4 2004 2004 HOH HOH . 
E 4 HOH F 5 2005 2005 HOH HOH . 
E 4 HOH F 6 2006 2006 HOH HOH . 
E 4 HOH F 7 2007 2007 HOH HOH . 
E 4 HOH F 8 2008 2008 HOH HOH . 
E 4 HOH F 9 2009 2009 HOH HOH . 
E 4 HOH F 10 2010 2010 HOH HOH . 
E 4 HOH F 11 2011 2011 HOH HOH . 
E 4 HOH F 12 2012 2012 HOH HOH . 
E 4 HOH F 13 2013 2013 HOH HOH . 
E 4 HOH F 14 2014 2014 HOH HOH . 
E 4 HOH F 15 2015 2015 HOH HOH . 
E 4 HOH F 16 2016 2016 HOH HOH . 
E 4 HOH F 17 2017 2017 HOH HOH . 
E 4 HOH F 18 2018 2018 HOH HOH . 
E 4 HOH F 19 2019 2019 HOH HOH . 
E 4 HOH F 20 2020 2020 HOH HOH . 
E 4 HOH F 21 2021 2021 HOH HOH . 
E 4 HOH F 22 2022 2022 HOH HOH . 
E 4 HOH F 23 2023 2023 HOH HOH . 
E 4 HOH F 24 2024 2024 HOH HOH . 
E 4 HOH F 25 2025 2025 HOH HOH . 
E 4 HOH F 26 2026 2026 HOH HOH . 
E 4 HOH F 27 2027 2027 HOH HOH . 
E 4 HOH F 28 2028 2028 HOH HOH . 
E 4 HOH F 29 2030 2030 HOH HOH . 
E 4 HOH F 30 2031 2031 HOH HOH . 
E 4 HOH F 31 2032 2032 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 -45.73 -0.365 -13.987 1 92.44 ? C1 NAG 1326 E 1 
HETATM 2 C C2 NAG . . . C 3 -47.157 -0.66 -14.413 1 92.52 ? C2 NAG 1326 E 1 
HETATM 3 C C3 NAG . . . C 3 -47.682 -1.863 -13.659 1 92.63 ? C3 NAG 1326 E 1 
HETATM 4 C C4 NAG . . . C 3 -46.775 -3.039 -13.941 1 93.01 ? C4 NAG 1326 E 1 
HETATM 5 C C5 NAG . . . C 3 -45.347 -2.68 -13.557 1 93.4 ? C5 NAG 1326 E 1 
HETATM 6 C C6 NAG . . . C 3 -44.395 -3.823 -13.883 1 93.8 ? C6 NAG 1326 E 1 
HETATM 7 C C7 NAG . . . C 3 -48.501 1.191 -15.18 1 92.61 ? C7 NAG 1326 E 1 
HETATM 8 C C8 NAG . . . C 3 -48.316 0.612 -16.545 1 92.43 ? C8 NAG 1326 E 1 
HETATM 9 N N2 NAG . . . C 3 -48.013 0.477 -14.176 1 92.6 ? N2 NAG 1326 E 1 
HETATM 10 O O3 NAG . . . C 3 -48.998 -2.181 -14.103 1 93.27 ? O3 NAG 1326 E 1 
HETATM 11 O O4 NAG . . . C 3 -47.238 -4.166 -13.195 1 92.77 ? O4 NAG 1326 E 1 
HETATM 12 O O5 NAG . . . C 3 -44.921 -1.506 -14.249 1 92.84 ? O5 NAG 1326 E 1 
HETATM 13 O O6 NAG . . . C 3 -44.891 -4.588 -14.987 1 94.42 ? O6 NAG 1326 E 1 
HETATM 14 O O7 NAG . . . C 3 -49.064 2.253 -15.007 1 92.65 ? O7 NAG 1326 E 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#