data_3ZPG
#
_model_server_result.job_id            DOnoHWGgeRmHVPs4AEiAUw 
_model_server_result.datetime_utc      '2024-10-15 13:14:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3zpg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1361}' 
#
_entry.id    3ZPG 
#
_exptl.entry_id    3ZPG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              363.221 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3ZPG 
_cell.length_a            72.998 
_cell.length_b            72.998 
_cell.length_c            201.456 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ZPG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 75 A HIS 54 1_555 B ZN ZN . A ZN 1358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc2 A SG CYS 100 A CYS 79 1_555 B ZN ZN . A ZN 1358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc3 A SG CYS 109 A CYS 88 1_555 B ZN ZN . A ZN 1358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc4 B ZN ZN . A ZN 1358 1_555 H O1 CAC . A CAC 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
#
_chem_comp.formula           'C10 H14 N5 O8 P' 
_chem_comp.formula_weight    363.221 
_chem_comp.id                5GP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "GUANOSINE-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P 5GP doub 1 n n 
P O2P 5GP sing 2 n n 
P O3P 5GP sing 3 n n 
P O5' 5GP sing 4 n n 
O2P HOP2 5GP sing 5 n n 
O3P HOP3 5GP sing 6 n n 
O5' C5' 5GP sing 7 n n 
C5' C4' 5GP sing 8 n n 
C5' "H5'1" 5GP sing 9 n n 
C5' "H5'2" 5GP sing 10 n n 
C4' O4' 5GP sing 11 n n 
C4' C3' 5GP sing 12 n n 
C4' H4' 5GP sing 13 n n 
O4' C1' 5GP sing 14 n n 
C3' O3' 5GP sing 15 n n 
C3' C2' 5GP sing 16 n n 
C3' H3' 5GP sing 17 n n 
O3' HO3' 5GP sing 18 n n 
C2' O2' 5GP sing 19 n n 
C2' C1' 5GP sing 20 n n 
C2' H2' 5GP sing 21 n n 
O2' HO2' 5GP sing 22 n n 
C1' N9 5GP sing 23 n n 
C1' H1' 5GP sing 24 n n 
N9 C8 5GP sing 25 n y 
N9 C4 5GP sing 26 n y 
C8 N7 5GP doub 27 n y 
C8 H8 5GP sing 28 n n 
N7 C5 5GP sing 29 n y 
C5 C6 5GP sing 30 n n 
C5 C4 5GP doub 31 n y 
C6 O6 5GP doub 32 n n 
C6 N1 5GP sing 33 n n 
N1 C2 5GP sing 34 n n 
N1 HN1 5GP sing 35 n n 
C2 N2 5GP sing 36 n n 
C2 N3 5GP doub 37 n n 
N2 HN21 5GP sing 38 n n 
N2 HN22 5GP sing 39 n n 
N3 C4 5GP sing 40 n n 
#
_atom_sites.entry_id                     3ZPG 
_atom_sites.fract_transf_matrix[1][1]    0.013699 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013699 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004964 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 1358 1358 ZN ZN . 
C 3 SO4 A 1 1359 1359 SO4 SO4 . 
D 3 SO4 A 1 1360 1360 SO4 SO4 . 
E 4 5GP A 1 1361 1361 5GP 5GP . 
F 5 OXL A 1 1362 1362 OXL OXL . 
G 5 OXL A 1 1363 1363 OXL OXL . 
H 6 CAC A 1 1364 1364 CAC CAC . 
I 7 CL A 1 1365 1365 CL CL . 
J 8 ACT A 1 1366 1366 ACT ACT . 
K 4 5GP A 1 1367 1367 5GP 5GP . 
L 9 HOH A 1 2001 2001 HOH HOH . 
L 9 HOH A 2 2002 2002 HOH HOH . 
L 9 HOH A 3 2003 2003 HOH HOH . 
L 9 HOH A 4 2004 2004 HOH HOH . 
L 9 HOH A 5 2005 2005 HOH HOH . 
L 9 HOH A 6 2006 2006 HOH HOH . 
L 9 HOH A 7 2007 2007 HOH HOH . 
L 9 HOH A 8 2008 2008 HOH HOH . 
L 9 HOH A 9 2009 2009 HOH HOH . 
L 9 HOH A 10 2010 2010 HOH HOH . 
L 9 HOH A 11 2011 2011 HOH HOH . 
L 9 HOH A 12 2012 2012 HOH HOH . 
L 9 HOH A 13 2013 2013 HOH HOH . 
L 9 HOH A 14 2014 2014 HOH HOH . 
L 9 HOH A 15 2015 2015 HOH HOH . 
L 9 HOH A 16 2016 2016 HOH HOH . 
L 9 HOH A 17 2017 2017 HOH HOH . 
L 9 HOH A 18 2018 2018 HOH HOH . 
L 9 HOH A 19 2019 2019 HOH HOH . 
L 9 HOH A 20 2020 2020 HOH HOH . 
L 9 HOH A 21 2021 2021 HOH HOH . 
L 9 HOH A 22 2022 2022 HOH HOH . 
L 9 HOH A 23 2023 2023 HOH HOH . 
L 9 HOH A 24 2024 2024 HOH HOH . 
L 9 HOH A 25 2025 2025 HOH HOH . 
L 9 HOH A 26 2026 2026 HOH HOH . 
L 9 HOH A 27 2027 2027 HOH HOH . 
L 9 HOH A 28 2028 2028 HOH HOH . 
L 9 HOH A 29 2029 2029 HOH HOH . 
L 9 HOH A 30 2030 2030 HOH HOH . 
L 9 HOH A 31 2031 2031 HOH HOH . 
L 9 HOH A 32 2032 2032 HOH HOH . 
L 9 HOH A 33 2033 2033 HOH HOH . 
L 9 HOH A 34 2034 2034 HOH HOH . 
L 9 HOH A 35 2035 2035 HOH HOH . 
L 9 HOH A 36 2036 2036 HOH HOH . 
L 9 HOH A 37 2037 2037 HOH HOH . 
L 9 HOH A 38 2038 2038 HOH HOH . 
L 9 HOH A 39 2039 2039 HOH HOH . 
L 9 HOH A 40 2040 2040 HOH HOH . 
L 9 HOH A 41 2041 2041 HOH HOH . 
L 9 HOH A 42 2042 2042 HOH HOH . 
L 9 HOH A 43 2043 2043 HOH HOH . 
L 9 HOH A 44 2044 2044 HOH HOH . 
L 9 HOH A 45 2045 2045 HOH HOH . 
L 9 HOH A 46 2046 2046 HOH HOH . 
L 9 HOH A 47 2047 2047 HOH HOH . 
L 9 HOH A 48 2048 2048 HOH HOH . 
L 9 HOH A 49 2049 2049 HOH HOH . 
L 9 HOH A 50 2050 2050 HOH HOH . 
L 9 HOH A 51 2051 2051 HOH HOH . 
L 9 HOH A 52 2052 2052 HOH HOH . 
L 9 HOH A 53 2053 2053 HOH HOH . 
L 9 HOH A 54 2054 2054 HOH HOH . 
L 9 HOH A 55 2055 2055 HOH HOH . 
L 9 HOH A 56 2056 2056 HOH HOH . 
L 9 HOH A 57 2057 2057 HOH HOH . 
L 9 HOH A 58 2058 2058 HOH HOH . 
L 9 HOH A 59 2059 2059 HOH HOH . 
L 9 HOH A 60 2060 2060 HOH HOH . 
L 9 HOH A 61 2061 2061 HOH HOH . 
L 9 HOH A 62 2062 2062 HOH HOH . 
L 9 HOH A 63 2063 2063 HOH HOH . 
L 9 HOH A 64 2064 2064 HOH HOH . 
L 9 HOH A 65 2065 2065 HOH HOH . 
L 9 HOH A 66 2066 2066 HOH HOH . 
L 9 HOH A 67 2067 2067 HOH HOH . 
L 9 HOH A 68 2068 2068 HOH HOH . 
L 9 HOH A 69 2069 2069 HOH HOH . 
L 9 HOH A 70 2070 2070 HOH HOH . 
L 9 HOH A 71 2071 2071 HOH HOH . 
L 9 HOH A 72 2072 2072 HOH HOH . 
L 9 HOH A 73 2073 2073 HOH HOH . 
L 9 HOH A 74 2074 2074 HOH HOH . 
L 9 HOH A 75 2075 2075 HOH HOH . 
L 9 HOH A 76 2076 2076 HOH HOH . 
L 9 HOH A 77 2077 2077 HOH HOH . 
L 9 HOH A 78 2078 2078 HOH HOH . 
L 9 HOH A 79 2079 2079 HOH HOH . 
L 9 HOH A 80 2080 2080 HOH HOH . 
L 9 HOH A 81 2081 2081 HOH HOH . 
L 9 HOH A 82 2082 2082 HOH HOH . 
L 9 HOH A 83 2083 2083 HOH HOH . 
L 9 HOH A 84 2084 2084 HOH HOH . 
L 9 HOH A 85 2085 2085 HOH HOH . 
L 9 HOH A 86 2086 2086 HOH HOH . 
L 9 HOH A 87 2087 2087 HOH HOH . 
L 9 HOH A 88 2088 2088 HOH HOH . 
L 9 HOH A 89 2089 2089 HOH HOH . 
L 9 HOH A 90 2090 2090 HOH HOH . 
L 9 HOH A 91 2091 2091 HOH HOH . 
L 9 HOH A 92 2092 2092 HOH HOH . 
L 9 HOH A 93 2093 2093 HOH HOH . 
L 9 HOH A 94 2094 2094 HOH HOH . 
L 9 HOH A 95 2095 2095 HOH HOH . 
L 9 HOH A 96 2096 2096 HOH HOH . 
L 9 HOH A 97 2097 2097 HOH HOH . 
L 9 HOH A 98 2098 2098 HOH HOH . 
L 9 HOH A 99 2099 2099 HOH HOH . 
L 9 HOH A 100 2100 2100 HOH HOH . 
L 9 HOH A 101 2101 2101 HOH HOH . 
L 9 HOH A 102 2102 2102 HOH HOH . 
L 9 HOH A 103 2103 2103 HOH HOH . 
L 9 HOH A 104 2104 2104 HOH HOH . 
L 9 HOH A 105 2105 2105 HOH HOH . 
L 9 HOH A 106 2106 2106 HOH HOH . 
L 9 HOH A 107 2107 2107 HOH HOH . 
L 9 HOH A 108 2108 2108 HOH HOH . 
L 9 HOH A 109 2109 2109 HOH HOH . 
L 9 HOH A 110 2110 2110 HOH HOH . 
L 9 HOH A 111 2111 2111 HOH HOH . 
L 9 HOH A 112 2112 2112 HOH HOH . 
L 9 HOH A 113 2113 2113 HOH HOH . 
L 9 HOH A 114 2114 2114 HOH HOH . 
L 9 HOH A 115 2115 2115 HOH HOH . 
L 9 HOH A 116 2116 2116 HOH HOH . 
L 9 HOH A 117 2117 2117 HOH HOH . 
L 9 HOH A 118 2118 2118 HOH HOH . 
L 9 HOH A 119 2119 2119 HOH HOH . 
L 9 HOH A 120 2120 2120 HOH HOH . 
L 9 HOH A 121 2121 2121 HOH HOH . 
L 9 HOH A 122 2122 2122 HOH HOH . 
L 9 HOH A 123 2123 2123 HOH HOH . 
L 9 HOH A 124 2124 2124 HOH HOH . 
L 9 HOH A 125 2125 2125 HOH HOH . 
L 9 HOH A 126 2126 2126 HOH HOH . 
L 9 HOH A 127 2127 2127 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 5GP . . . E 4 -15.746 -42.901 -15.602 1 64.76 ? P 5GP 1361 A 1 
HETATM 2 O O1P 5GP . . . E 4 -15.077 -41.536 -15.591 1 61.59 ? O1P 5GP 1361 A 1 
HETATM 3 O O2P 5GP . . . E 4 -16.453 -43.265 -16.896 1 63.38 ? O2P 5GP 1361 A 1 
HETATM 4 O O3P 5GP . . . E 4 -14.908 -44.031 -15.032 1 63.07 ? O3P 5GP 1361 A 1 
HETATM 5 O O5' 5GP . . . E 4 -16.925 -42.732 -14.518 1 64.5 ? O5' 5GP 1361 A 1 
HETATM 6 C C5' 5GP . . . E 4 -16.635 -42.231 -13.21 1 64.62 ? C5' 5GP 1361 A 1 
HETATM 7 C C4' 5GP . . . E 4 -17.64 -41.143 -12.834 1 64.18 ? C4' 5GP 1361 A 1 
HETATM 8 O O4' 5GP . . . E 4 -17.616 -40.051 -13.771 1 62.27 ? O4' 5GP 1361 A 1 
HETATM 9 C C3' 5GP . . . E 4 -19.048 -41.734 -12.821 1 63.58 ? C3' 5GP 1361 A 1 
HETATM 10 O O3' 5GP . . . E 4 -19.735 -41.32 -11.637 1 62.93 ? O3' 5GP 1361 A 1 
HETATM 11 C C2' 5GP . . . E 4 -19.684 -41.158 -14.068 1 63.33 ? C2' 5GP 1361 A 1 
HETATM 12 O O2' 5GP . . . E 4 -21.107 -41.022 -13.94 1 65.14 ? O2' 5GP 1361 A 1 
HETATM 13 C C1' 5GP . . . E 4 -18.936 -39.839 -14.276 1 61.91 ? C1' 5GP 1361 A 1 
HETATM 14 N N9 5GP . . . E 4 -18.908 -39.51 -15.715 1 60.3 ? N9 5GP 1361 A 1 
HETATM 15 C C8 5GP . . . E 4 -18.119 -40.077 -16.642 1 60.11 ? C8 5GP 1361 A 1 
HETATM 16 N N7 5GP . . . E 4 -18.396 -39.527 -17.846 1 59.76 ? N7 5GP 1361 A 1 
HETATM 17 C C5 5GP . . . E 4 -19.367 -38.618 -17.659 1 58.88 ? C5 5GP 1361 A 1 
HETATM 18 C C6 5GP . . . E 4 -20.033 -37.769 -18.52 1 58.82 ? C6 5GP 1361 A 1 
HETATM 19 O O6 5GP . . . E 4 -19.731 -37.792 -19.732 1 58.85 ? O6 5GP 1361 A 1 
HETATM 20 N N1 5GP . . . E 4 -20.984 -36.941 -18.033 1 58.57 ? N1 5GP 1361 A 1 
HETATM 21 C C2 5GP . . . E 4 -21.296 -36.937 -16.717 1 58.24 ? C2 5GP 1361 A 1 
HETATM 22 N N2 5GP . . . E 4 -22.257 -36.102 -16.244 1 57.17 ? N2 5GP 1361 A 1 
HETATM 23 N N3 5GP . . . E 4 -20.655 -37.764 -15.852 1 58.5 ? N3 5GP 1361 A 1 
HETATM 24 C C4 5GP . . . E 4 -19.691 -38.609 -16.31 1 59.44 ? C4 5GP 1361 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           24 
#