data_3ZPQ
#
_model_server_result.job_id            r3F-ep7gbFrWyEn2-OWk7g 
_model_server_result.datetime_utc      '2024-11-23 02:13:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3zpq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":1360}' 
#
_entry.id    3ZPQ 
#
_exptl.entry_id    3ZPQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              201.268 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-(PIPERAZIN-1-YL)-1H-INDOLE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.89 
_cell.angle_gamma         90 
_cell.entry_id            3ZPQ 
_cell.length_a            89.852 
_cell.length_b            61.441 
_cell.length_c            100.784 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ZPQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,U 1 1 
B,K,L,M,N,O,P,Q,R,S,T,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf3 B SG CYS 84 B CYS 114 1_555 B SG CYS 169 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 B SG CYS 162 B CYS 192 1_555 B SG CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc1 A O CYS 162 A CYS 192 1_555 J NA NA . A NA 1360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc2 A O ASP 165 A ASP 195 1_555 J NA NA . A NA 1360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc3 A O CYS 168 A CYS 198 1_555 J NA NA . A NA 1360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc4 J NA NA . A NA 1360 1_555 U O HOH . A HOH 2010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? 
metalc ? metalc5 B OD1 ASP 57 B ASP 87 1_555 R NA NA . B NA 1359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc6 B OG SER 98 B SER 128 1_555 R NA NA . B NA 1359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc7 B O CYS 162 B CYS 192 1_555 T NA NA . B NA 1361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc8 B O ASP 165 B ASP 195 1_555 T NA NA . B NA 1361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
metalc ? metalc9 B O CYS 168 B CYS 198 1_555 T NA NA . B NA 1361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc10 R NA NA . B NA 1359 1_555 V O HOH . B HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc11 R NA NA . B NA 1359 1_555 V O HOH . B HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc12 T NA NA . B NA 1361 1_555 V O HOH . B HOH 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
#
_chem_comp.formula           'C12 H15 N3' 
_chem_comp.formula_weight    201.268 
_chem_comp.id                XF5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-(PIPERAZIN-1-YL)-1H-INDOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C11 C12 XF5 sing 438 n n 
C11 N10 XF5 sing 439 n n 
C12 N13 XF5 sing 440 n n 
N13 C14 XF5 sing 441 n n 
C14 C15 XF5 sing 442 n n 
C15 N10 XF5 sing 443 n n 
N10 C3 XF5 sing 444 n n 
C3 C4 XF5 sing 445 n y 
C3 C2 XF5 doub 446 n y 
C4 C5 XF5 sing 447 n y 
C4 C8 XF5 doub 448 n y 
C5 C6 XF5 doub 449 n y 
C6 N7 XF5 sing 450 n y 
N7 C8 XF5 sing 451 n y 
C8 C9 XF5 sing 452 n y 
C9 C1 XF5 doub 453 n y 
C1 C2 XF5 sing 454 n y 
C11 H111 XF5 sing 455 n n 
C11 H112 XF5 sing 456 n n 
C12 H121 XF5 sing 457 n n 
C12 H122 XF5 sing 458 n n 
N13 H13 XF5 sing 459 n n 
C14 H141 XF5 sing 460 n n 
C14 H142 XF5 sing 461 n n 
C15 H151 XF5 sing 462 n n 
C15 H152 XF5 sing 463 n n 
C2 H2 XF5 sing 464 n n 
C5 H5 XF5 sing 465 n n 
C6 H6 XF5 sing 466 n n 
N7 H7 XF5 sing 467 n n 
C9 H9 XF5 sing 468 n n 
C1 H1 XF5 sing 469 n n 
#
_atom_sites.entry_id                     3ZPQ 
_atom_sites.fract_transf_matrix[1][1]    0.011129 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003808 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016276 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010487 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 Y01 A 1 401 401 Y01 Y01 . 
D 2 Y01 A 1 402 402 Y01 Y01 . 
E 3 2CV A 1 502 502 2CV 2CV . 
F 3 2CV A 1 503 503 2CV 2CV . 
G 3 2CV A 1 505 505 2CV 2CV . 
H 3 2CV A 1 506 506 2CV 2CV . 
I 4 XF5 A 1 1359 1359 XF5 XF5 . 
J 5 NA A 1 1360 1360 NA NA . 
K 2 Y01 B 1 401 401 Y01 Y01 . 
L 2 Y01 B 1 402 402 Y01 Y01 . 
M 3 2CV B 1 502 502 2CV 2CV . 
N 3 2CV B 1 503 503 2CV 2CV . 
O 3 2CV B 1 504 504 2CV 2CV . 
P 3 2CV B 1 505 505 2CV 2CV . 
Q 3 2CV B 1 506 506 2CV 2CV . 
R 5 NA B 1 1359 1359 NA NA . 
S 4 XF5 B 1 1360 1360 XF5 XF5 . 
T 5 NA B 1 1361 1361 NA NA . 
U 6 HOH A 1 2001 2001 HOH HOH . 
U 6 HOH A 2 2002 2002 HOH HOH . 
U 6 HOH A 3 2003 2003 HOH HOH . 
U 6 HOH A 4 2004 2004 HOH HOH . 
U 6 HOH A 5 2005 2005 HOH HOH . 
U 6 HOH A 6 2006 2006 HOH HOH . 
U 6 HOH A 7 2007 2007 HOH HOH . 
U 6 HOH A 8 2008 2008 HOH HOH . 
U 6 HOH A 9 2009 2009 HOH HOH . 
U 6 HOH A 10 2010 2010 HOH HOH . 
U 6 HOH A 11 2011 2011 HOH HOH . 
U 6 HOH A 12 2012 2012 HOH HOH . 
U 6 HOH A 13 2013 2013 HOH HOH . 
U 6 HOH A 14 2014 2014 HOH HOH . 
U 6 HOH A 15 2015 2015 HOH HOH . 
U 6 HOH A 16 2016 2016 HOH HOH . 
U 6 HOH A 17 2017 2017 HOH HOH . 
U 6 HOH A 18 2018 2018 HOH HOH . 
V 6 HOH B 1 2001 2001 HOH HOH . 
V 6 HOH B 2 2002 2002 HOH HOH . 
V 6 HOH B 3 2003 2003 HOH HOH . 
V 6 HOH B 4 2004 2004 HOH HOH . 
V 6 HOH B 5 2005 2005 HOH HOH . 
V 6 HOH B 6 2006 2006 HOH HOH . 
V 6 HOH B 7 2007 2007 HOH HOH . 
V 6 HOH B 8 2008 2008 HOH HOH . 
V 6 HOH B 9 2009 2009 HOH HOH . 
V 6 HOH B 10 2010 2010 HOH HOH . 
V 6 HOH B 11 2011 2011 HOH HOH . 
V 6 HOH B 12 2012 2012 HOH HOH . 
V 6 HOH B 13 2013 2013 HOH HOH . 
V 6 HOH B 14 2014 2014 HOH HOH . 
V 6 HOH B 15 2015 2015 HOH HOH . 
V 6 HOH B 16 2016 2016 HOH HOH . 
V 6 HOH B 17 2017 2017 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 XF5 . . . S 4 9.011 -11.088 19.527 1 42.32 ? C11 XF5 1360 B 1 
HETATM 2 C C12 XF5 . . . S 4 10.447 -11.202 19.085 1 43.09 ? C12 XF5 1360 B 1 
HETATM 3 N N13 XF5 . . . S 4 11.357 -10.351 19.882 1 42.67 ? N13 XF5 1360 B 1 
HETATM 4 C C14 XF5 . . . S 4 10.802 -10.135 21.22 1 41.75 ? C14 XF5 1360 B 1 
HETATM 5 C C15 XF5 . . . S 4 9.666 -9.203 21.167 1 41.11 ? C15 XF5 1360 B 1 
HETATM 6 N N10 XF5 . . . S 4 8.644 -9.882 20.337 1 40.87 ? N10 XF5 1360 B 1 
HETATM 7 C C3 XF5 . . . S 4 7.338 -9.554 20.388 1 38.76 ? C3 XF5 1360 B 1 
HETATM 8 C C4 XF5 . . . S 4 6.684 -9.098 19.311 1 38.17 ? C4 XF5 1360 B 1 
HETATM 9 C C5 XF5 . . . S 4 7.09 -8.835 18.065 1 39.19 ? C5 XF5 1360 B 1 
HETATM 10 C C6 XF5 . . . S 4 6.047 -8.396 17.361 1 39.12 ? C6 XF5 1360 B 1 
HETATM 11 N N7 XF5 . . . S 4 4.989 -8.386 18.17 1 37.99 ? N7 XF5 1360 B 1 
HETATM 12 C C8 XF5 . . . S 4 5.374 -8.822 19.366 1 37.44 ? C8 XF5 1360 B 1 
HETATM 13 C C9 XF5 . . . S 4 4.677 -9 20.484 1 37.46 ? C9 XF5 1360 B 1 
HETATM 14 C C1 XF5 . . . S 4 5.292 -9.475 21.629 1 37.35 ? C1 XF5 1360 B 1 
HETATM 15 C C2 XF5 . . . S 4 6.643 -9.761 21.576 1 38.39 ? C2 XF5 1360 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           15 
#