data_3ZPQ # _model_server_result.job_id zrpIHM5i0iLGLHCwIYB4oA _model_server_result.datetime_utc '2024-11-23 01:44:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zpq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 3ZPQ # _exptl.entry_id 3ZPQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.726 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.89 _cell.angle_gamma 90 _cell.entry_id 3ZPQ _cell.length_a 89.852 _cell.length_b 61.441 _cell.length_c 100.784 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZPQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,U 1 1 B,K,L,M,N,O,P,Q,R,S,T,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 B SG CYS 84 B CYS 114 1_555 B SG CYS 169 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 B SG CYS 162 B CYS 192 1_555 B SG CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc1 A O CYS 162 A CYS 192 1_555 J NA NA . A NA 1360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc2 A O ASP 165 A ASP 195 1_555 J NA NA . A NA 1360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc3 A O CYS 168 A CYS 198 1_555 J NA NA . A NA 1360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc4 J NA NA . A NA 1360 1_555 U O HOH . A HOH 2010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc5 B OD1 ASP 57 B ASP 87 1_555 R NA NA . B NA 1359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc6 B OG SER 98 B SER 128 1_555 R NA NA . B NA 1359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc7 B O CYS 162 B CYS 192 1_555 T NA NA . B NA 1361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc8 B O ASP 165 B ASP 195 1_555 T NA NA . B NA 1361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc9 B O CYS 168 B CYS 198 1_555 T NA NA . B NA 1361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc10 R NA NA . B NA 1359 1_555 V O HOH . B HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc11 R NA NA . B NA 1359 1_555 V O HOH . B HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc12 T NA NA . B NA 1361 1_555 V O HOH . B HOH 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 470 n n CBA CAB Y01 sing 471 n n CBA CAN Y01 sing 472 n n CAN CAJ Y01 sing 473 n n CAJ CAO Y01 sing 474 n n CAO CBB Y01 sing 475 n n CBB CAC Y01 sing 476 n n CBB CBE Y01 sing 477 n n CBE CAP Y01 sing 478 n n CBE CBI Y01 sing 479 n n CAP CAQ Y01 sing 480 n n CAQ CBG Y01 sing 481 n n CBG CBI Y01 sing 482 n n CBG CBD Y01 sing 483 n n CBI CAE Y01 sing 484 n n CBI CAU Y01 sing 485 n n CAU CAS Y01 sing 486 n n CAS CBF Y01 sing 487 n n CBF CBD Y01 sing 488 n n CBF CBH Y01 sing 489 n n CBD CAK Y01 sing 490 n n CAK CAI Y01 sing 491 n n CAI CAZ Y01 doub 492 n n CAZ CAV Y01 sing 493 n n CAZ CBH Y01 sing 494 n n CAV CBC Y01 sing 495 n n CBH CAD Y01 sing 496 n n CBH CAT Y01 sing 497 n n CAT CAR Y01 sing 498 n n CAR CBC Y01 sing 499 n n CBC OAW Y01 sing 500 n n OAW CAY Y01 sing 501 n n CAY OAG Y01 doub 502 n n CAY CAM Y01 sing 503 n n CAM CAL Y01 sing 504 n n CAL CAX Y01 sing 505 n n CAX OAH Y01 sing 506 n n CAX OAF Y01 doub 507 n n CAA HAA1 Y01 sing 508 n n CAA HAA2 Y01 sing 509 n n CAA HAA3 Y01 sing 510 n n CBA HBA Y01 sing 511 n n CAB HAB1 Y01 sing 512 n n CAB HAB2 Y01 sing 513 n n CAB HAB3 Y01 sing 514 n n CAN HAN1 Y01 sing 515 n n CAN HAN2 Y01 sing 516 n n CAJ HAJ1 Y01 sing 517 n n CAJ HAJ2 Y01 sing 518 n n CAO HAO1 Y01 sing 519 n n CAO HAO2 Y01 sing 520 n n CBB HBB Y01 sing 521 n n CAC HAC1 Y01 sing 522 n n CAC HAC2 Y01 sing 523 n n CAC HAC3 Y01 sing 524 n n CBE HBE Y01 sing 525 n n CAP HAP1 Y01 sing 526 n n CAP HAP2 Y01 sing 527 n n CAQ HAQ1 Y01 sing 528 n n CAQ HAQ2 Y01 sing 529 n n CBG HBG Y01 sing 530 n n CBD HBD Y01 sing 531 n n CAE HAE1 Y01 sing 532 n n CAE HAE2 Y01 sing 533 n n CAE HAE3 Y01 sing 534 n n CAU HAU1 Y01 sing 535 n n CAU HAU2 Y01 sing 536 n n CAS HAS1 Y01 sing 537 n n CAS HAS2 Y01 sing 538 n n CBF HBF Y01 sing 539 n n CAK HAK1 Y01 sing 540 n n CAK HAK2 Y01 sing 541 n n CAI HAI Y01 sing 542 n n CAV HAV1 Y01 sing 543 n n CAV HAV2 Y01 sing 544 n n CBC HBC Y01 sing 545 n n CAD HAD1 Y01 sing 546 n n CAD HAD2 Y01 sing 547 n n CAD HAD3 Y01 sing 548 n n CAT HAT1 Y01 sing 549 n n CAT HAT2 Y01 sing 550 n n CAR HAR1 Y01 sing 551 n n CAR HAR2 Y01 sing 552 n n CAM HAM1 Y01 sing 553 n n CAM HAM2 Y01 sing 554 n n CAL HAL1 Y01 sing 555 n n CAL HAL2 Y01 sing 556 n n OAH HAH Y01 sing 557 n n # _atom_sites.entry_id 3ZPQ _atom_sites.fract_transf_matrix[1][1] 0.011129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003808 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010487 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 Y01 A 1 401 401 Y01 Y01 . D 2 Y01 A 1 402 402 Y01 Y01 . E 3 2CV A 1 502 502 2CV 2CV . F 3 2CV A 1 503 503 2CV 2CV . G 3 2CV A 1 505 505 2CV 2CV . H 3 2CV A 1 506 506 2CV 2CV . I 4 XF5 A 1 1359 1359 XF5 XF5 . J 5 NA A 1 1360 1360 NA NA . K 2 Y01 B 1 401 401 Y01 Y01 . L 2 Y01 B 1 402 402 Y01 Y01 . M 3 2CV B 1 502 502 2CV 2CV . N 3 2CV B 1 503 503 2CV 2CV . O 3 2CV B 1 504 504 2CV 2CV . P 3 2CV B 1 505 505 2CV 2CV . Q 3 2CV B 1 506 506 2CV 2CV . R 5 NA B 1 1359 1359 NA NA . S 4 XF5 B 1 1360 1360 XF5 XF5 . T 5 NA B 1 1361 1361 NA NA . U 6 HOH A 1 2001 2001 HOH HOH . U 6 HOH A 2 2002 2002 HOH HOH . U 6 HOH A 3 2003 2003 HOH HOH . U 6 HOH A 4 2004 2004 HOH HOH . U 6 HOH A 5 2005 2005 HOH HOH . U 6 HOH A 6 2006 2006 HOH HOH . U 6 HOH A 7 2007 2007 HOH HOH . U 6 HOH A 8 2008 2008 HOH HOH . U 6 HOH A 9 2009 2009 HOH HOH . U 6 HOH A 10 2010 2010 HOH HOH . U 6 HOH A 11 2011 2011 HOH HOH . U 6 HOH A 12 2012 2012 HOH HOH . U 6 HOH A 13 2013 2013 HOH HOH . U 6 HOH A 14 2014 2014 HOH HOH . U 6 HOH A 15 2015 2015 HOH HOH . U 6 HOH A 16 2016 2016 HOH HOH . U 6 HOH A 17 2017 2017 HOH HOH . U 6 HOH A 18 2018 2018 HOH HOH . V 6 HOH B 1 2001 2001 HOH HOH . V 6 HOH B 2 2002 2002 HOH HOH . V 6 HOH B 3 2003 2003 HOH HOH . V 6 HOH B 4 2004 2004 HOH HOH . V 6 HOH B 5 2005 2005 HOH HOH . V 6 HOH B 6 2006 2006 HOH HOH . V 6 HOH B 7 2007 2007 HOH HOH . V 6 HOH B 8 2008 2008 HOH HOH . V 6 HOH B 9 2009 2009 HOH HOH . V 6 HOH B 10 2010 2010 HOH HOH . V 6 HOH B 11 2011 2011 HOH HOH . V 6 HOH B 12 2012 2012 HOH HOH . V 6 HOH B 13 2013 2013 HOH HOH . V 6 HOH B 14 2014 2014 HOH HOH . V 6 HOH B 15 2015 2015 HOH HOH . V 6 HOH B 16 2016 2016 HOH HOH . V 6 HOH B 17 2017 2017 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . C 2 -5.55 -6.442 25.451 1 46.3 ? CAA Y01 401 A 1 HETATM 2 C CBA Y01 . . . C 2 -4.962 -7.25 26.593 1 45.11 ? CBA Y01 401 A 1 HETATM 3 C CAB Y01 . . . C 2 -5.053 -8.735 26.277 1 46.38 ? CAB Y01 401 A 1 HETATM 4 C CAN Y01 . . . C 2 -5.681 -6.912 27.893 1 46.72 ? CAN Y01 401 A 1 HETATM 5 C CAJ Y01 . . . C 2 -4.706 -6.602 29.032 1 46.96 ? CAJ Y01 401 A 1 HETATM 6 C CAO Y01 . . . C 2 -5.449 -6.442 30.366 1 48.1 ? CAO Y01 401 A 1 HETATM 7 C CBB Y01 . . . C 2 -4.888 -7.413 31.401 1 48.34 ? CBB Y01 401 A 1 HETATM 8 C CAC Y01 . . . C 2 -3.365 -7.225 31.497 1 49.51 ? CAC Y01 401 A 1 HETATM 9 C CBE Y01 . . . C 2 -5.53 -7.307 32.814 1 45.9 ? CBE Y01 401 A 1 HETATM 10 C CAP Y01 . . . C 2 -6.316 -6.008 33.087 1 43.18 ? CAP Y01 401 A 1 HETATM 11 C CAQ Y01 . . . C 2 -7.41 -6.45 34.104 1 45.74 ? CAQ Y01 401 A 1 HETATM 12 C CBG Y01 . . . C 2 -7.077 -7.915 34.452 1 42.59 ? CBG Y01 401 A 1 HETATM 13 C CBI Y01 . . . C 2 -6.534 -8.436 33.132 1 44.06 ? CBI Y01 401 A 1 HETATM 14 C CAE Y01 . . . C 2 -7.589 -8.585 32.019 1 39.15 ? CAE Y01 401 A 1 HETATM 15 C CAU Y01 . . . C 2 -5.895 -9.771 33.461 1 44.21 ? CAU Y01 401 A 1 HETATM 16 C CAS Y01 . . . C 2 -7.028 -10.715 33.925 1 45.87 ? CAS Y01 401 A 1 HETATM 17 C CBF Y01 . . . C 2 -7.783 -10.211 35.163 1 42.25 ? CBF Y01 401 A 1 HETATM 18 C CBD Y01 . . . C 2 -8.243 -8.764 34.981 1 41.65 ? CBD Y01 401 A 1 HETATM 19 C CAK Y01 . . . C 2 -8.786 -8.221 36.312 1 41.36 ? CAK Y01 401 A 1 HETATM 20 C CAI Y01 . . . C 2 -9.613 -9.145 36.958 1 42.3 ? CAI Y01 401 A 1 HETATM 21 C CAZ Y01 . . . C 2 -9.773 -10.498 36.65 1 43.09 ? CAZ Y01 401 A 1 HETATM 22 C CAV Y01 . . . C 2 -10.742 -11.389 37.423 1 43.42 ? CAV Y01 401 A 1 HETATM 23 C CBH Y01 . . . C 2 -8.946 -11.149 35.548 1 41.97 ? CBH Y01 401 A 1 HETATM 24 C CAD Y01 . . . C 2 -9.832 -11.422 34.342 1 40.43 ? CAD Y01 401 A 1 HETATM 25 C CAT Y01 . . . C 2 -8.433 -12.471 36.125 1 42.57 ? CAT Y01 401 A 1 HETATM 26 C CAR Y01 . . . C 2 -9.493 -13.24 36.93 1 42.83 ? CAR Y01 401 A 1 HETATM 27 C CBC Y01 . . . C 2 -9.885 -12.407 38.132 1 46.21 ? CBC Y01 401 A 1 HETATM 28 O OAW Y01 . . . C 2 -10.488 -12.954 39.371 1 51.75 ? OAW Y01 401 A 1 HETATM 29 C CAY Y01 . . . C 2 -11.17 -14.101 39.297 1 52.47 ? CAY Y01 401 A 1 HETATM 30 O OAG Y01 . . . C 2 -11.868 -14.301 38.322 1 59.83 ? OAG Y01 401 A 1 HETATM 31 C CAM Y01 . . . C 2 -11.182 -15.067 40.455 1 55.97 ? CAM Y01 401 A 1 HETATM 32 C CAL Y01 . . . C 2 -12.594 -15.082 41.053 1 60.8 ? CAL Y01 401 A 1 HETATM 33 C CAX Y01 . . . C 2 -13.167 -16.486 41.141 1 62.16 ? CAX Y01 401 A 1 HETATM 34 O OAH Y01 . . . C 2 -12.791 -17.317 40.288 1 65.66 ? OAH Y01 401 A 1 HETATM 35 O OAF Y01 . . . C 2 -13.989 -16.689 42.056 1 65.36 ? OAF Y01 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #