data_3ZPR # _model_server_result.job_id XetS3Y-X-Pz5tpeN92aN2A _model_server_result.datetime_utc '2025-02-03 00:58:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zpr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":402}' # _entry.id 3ZPR # _exptl.entry_id 3ZPR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.726 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.2 _cell.angle_gamma 90 _cell.entry_id 3ZPR _cell.length_a 89.968 _cell.length_b 60.812 _cell.length_c 101.178 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,U 1 1 B,K,L,M,N,O,P,Q,R,S,T,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf3 B SG CYS 84 B CYS 114 1_555 B SG CYS 169 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 162 B CYS 192 1_555 B SG CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc1 C NA NA . A NA 1 1_555 A OD1 ASP 57 A ASP 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc2 C NA NA . A NA 1 1_555 A OG SER 98 A SER 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc3 C NA NA . A NA 1 1_555 U O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc4 C NA NA . A NA 1 1_555 U O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc5 C NA NA . A NA 1 1_555 U O HOH . A HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc6 D NA NA . A NA 2 1_555 A O CYS 162 A CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc7 D NA NA . A NA 2 1_555 A O ASP 165 A ASP 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc8 D NA NA . A NA 2 1_555 A O CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc9 D NA NA . A NA 2 1_555 U O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc10 K NA NA . B NA 1 1_555 B OD1 ASP 57 B ASP 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc11 K NA NA . B NA 1 1_555 B OG SER 98 B SER 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc12 K NA NA . B NA 1 1_555 V O HOH . B HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc13 K NA NA . B NA 1 1_555 V O HOH . B HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc14 L NA NA . B NA 2 1_555 B O CYS 162 B CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc15 L NA NA . B NA 2 1_555 B O ASP 165 B ASP 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc16 L NA NA . B NA 2 1_555 B O CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc17 L NA NA . B NA 2 1_555 V O HOH . B HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 474 n n CBA CAB Y01 sing 475 n n CBA CAN Y01 sing 476 n n CAN CAJ Y01 sing 477 n n CAJ CAO Y01 sing 478 n n CAO CBB Y01 sing 479 n n CBB CAC Y01 sing 480 n n CBB CBE Y01 sing 481 n n CBE CAP Y01 sing 482 n n CBE CBI Y01 sing 483 n n CAP CAQ Y01 sing 484 n n CAQ CBG Y01 sing 485 n n CBG CBI Y01 sing 486 n n CBG CBD Y01 sing 487 n n CBI CAE Y01 sing 488 n n CBI CAU Y01 sing 489 n n CAU CAS Y01 sing 490 n n CAS CBF Y01 sing 491 n n CBF CBD Y01 sing 492 n n CBF CBH Y01 sing 493 n n CBD CAK Y01 sing 494 n n CAK CAI Y01 sing 495 n n CAI CAZ Y01 doub 496 n n CAZ CAV Y01 sing 497 n n CAZ CBH Y01 sing 498 n n CAV CBC Y01 sing 499 n n CBH CAD Y01 sing 500 n n CBH CAT Y01 sing 501 n n CAT CAR Y01 sing 502 n n CAR CBC Y01 sing 503 n n CBC OAW Y01 sing 504 n n OAW CAY Y01 sing 505 n n CAY OAG Y01 doub 506 n n CAY CAM Y01 sing 507 n n CAM CAL Y01 sing 508 n n CAL CAX Y01 sing 509 n n CAX OAH Y01 sing 510 n n CAX OAF Y01 doub 511 n n CAA HAA1 Y01 sing 512 n n CAA HAA2 Y01 sing 513 n n CAA HAA3 Y01 sing 514 n n CBA HBA Y01 sing 515 n n CAB HAB1 Y01 sing 516 n n CAB HAB2 Y01 sing 517 n n CAB HAB3 Y01 sing 518 n n CAN HAN1 Y01 sing 519 n n CAN HAN2 Y01 sing 520 n n CAJ HAJ1 Y01 sing 521 n n CAJ HAJ2 Y01 sing 522 n n CAO HAO1 Y01 sing 523 n n CAO HAO2 Y01 sing 524 n n CBB HBB Y01 sing 525 n n CAC HAC1 Y01 sing 526 n n CAC HAC2 Y01 sing 527 n n CAC HAC3 Y01 sing 528 n n CBE HBE Y01 sing 529 n n CAP HAP1 Y01 sing 530 n n CAP HAP2 Y01 sing 531 n n CAQ HAQ1 Y01 sing 532 n n CAQ HAQ2 Y01 sing 533 n n CBG HBG Y01 sing 534 n n CBD HBD Y01 sing 535 n n CAE HAE1 Y01 sing 536 n n CAE HAE2 Y01 sing 537 n n CAE HAE3 Y01 sing 538 n n CAU HAU1 Y01 sing 539 n n CAU HAU2 Y01 sing 540 n n CAS HAS1 Y01 sing 541 n n CAS HAS2 Y01 sing 542 n n CBF HBF Y01 sing 543 n n CAK HAK1 Y01 sing 544 n n CAK HAK2 Y01 sing 545 n n CAI HAI Y01 sing 546 n n CAV HAV1 Y01 sing 547 n n CAV HAV2 Y01 sing 548 n n CBC HBC Y01 sing 549 n n CAD HAD1 Y01 sing 550 n n CAD HAD2 Y01 sing 551 n n CAD HAD3 Y01 sing 552 n n CAT HAT1 Y01 sing 553 n n CAT HAT2 Y01 sing 554 n n CAR HAR1 Y01 sing 555 n n CAR HAR2 Y01 sing 556 n n CAM HAM1 Y01 sing 557 n n CAM HAM2 Y01 sing 558 n n CAL HAL1 Y01 sing 559 n n CAL HAL2 Y01 sing 560 n n OAH HAH Y01 sing 561 n n # _atom_sites.entry_id 3ZPR _atom_sites.fract_transf_matrix[1][1] 0.011115 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003871 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010466 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 1 1 NA NA . D 2 NA A 1 2 2 NA NA . E 3 Y01 A 1 401 401 Y01 Y01 . F 3 Y01 A 1 402 402 Y01 Y01 . G 4 3WC A 1 500 500 3WC 3WC . H 5 2CV A 1 501 501 2CV 2CV . I 5 2CV A 1 502 502 2CV 2CV . J 5 2CV A 1 503 503 2CV 2CV . K 2 NA B 1 1 1 NA NA . L 2 NA B 1 2 2 NA NA . M 3 Y01 B 1 401 401 Y01 Y01 . N 3 Y01 B 1 402 402 Y01 Y01 . O 4 3WC B 1 500 500 3WC 3WC . P 5 2CV B 1 501 501 2CV 2CV . Q 5 2CV B 1 502 502 2CV 2CV . R 5 2CV B 1 503 503 2CV 2CV . S 5 2CV B 1 505 505 2CV 2CV . T 5 2CV B 1 506 506 2CV 2CV . U 6 HOH A 1 2001 2001 HOH HOH . U 6 HOH A 2 2002 2002 HOH HOH . U 6 HOH A 3 2003 2003 HOH HOH . U 6 HOH A 4 2004 2004 HOH HOH . U 6 HOH A 5 2005 2005 HOH HOH . U 6 HOH A 6 2006 2006 HOH HOH . U 6 HOH A 7 2007 2007 HOH HOH . U 6 HOH A 8 2008 2008 HOH HOH . U 6 HOH A 9 2009 2009 HOH HOH . U 6 HOH A 10 2010 2010 HOH HOH . U 6 HOH A 11 2011 2011 HOH HOH . U 6 HOH A 12 2012 2012 HOH HOH . U 6 HOH A 13 2013 2013 HOH HOH . U 6 HOH A 14 2014 2014 HOH HOH . U 6 HOH A 15 2015 2015 HOH HOH . U 6 HOH A 16 2016 2016 HOH HOH . U 6 HOH A 17 2017 2017 HOH HOH . U 6 HOH A 18 2018 2018 HOH HOH . V 6 HOH B 1 2001 2001 HOH HOH . V 6 HOH B 2 2002 2002 HOH HOH . V 6 HOH B 3 2003 2003 HOH HOH . V 6 HOH B 4 2004 2004 HOH HOH . V 6 HOH B 5 2005 2005 HOH HOH . V 6 HOH B 6 2006 2006 HOH HOH . V 6 HOH B 7 2007 2007 HOH HOH . V 6 HOH B 8 2008 2008 HOH HOH . V 6 HOH B 9 2009 2009 HOH HOH . V 6 HOH B 10 2010 2010 HOH HOH . V 6 HOH B 11 2011 2011 HOH HOH . V 6 HOH B 12 2012 2012 HOH HOH . V 6 HOH B 13 2013 2013 HOH HOH . V 6 HOH B 14 2014 2014 HOH HOH . V 6 HOH B 15 2015 2015 HOH HOH . V 6 HOH B 16 2016 2016 HOH HOH . V 6 HOH B 17 2017 2017 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . N 3 6.731 -23.611 28.818 1 66.52 ? CAA Y01 402 B 1 HETATM 2 C CBA Y01 . . . N 3 5.218 -23.355 28.974 1 71.16 ? CBA Y01 402 B 1 HETATM 3 C CAB Y01 . . . N 3 4.574 -22.844 27.666 1 68.88 ? CAB Y01 402 B 1 HETATM 4 C CAN Y01 . . . N 3 4.942 -22.397 30.137 1 71.47 ? CAN Y01 402 B 1 HETATM 5 C CAJ Y01 . . . N 3 4.535 -23.115 31.426 1 69.76 ? CAJ Y01 402 B 1 HETATM 6 C CAO Y01 . . . N 3 3.031 -23.351 31.461 1 71.49 ? CAO Y01 402 B 1 HETATM 7 C CBB Y01 . . . N 3 2.266 -22.443 32.438 1 72.42 ? CBB Y01 402 B 1 HETATM 8 C CAC Y01 . . . N 3 0.806 -22.906 32.486 1 79.7 ? CAC Y01 402 B 1 HETATM 9 C CBE Y01 . . . N 3 2.898 -22.303 33.848 1 69.41 ? CBE Y01 402 B 1 HETATM 10 C CAP Y01 . . . N 3 3.849 -21.077 33.9 1 71.64 ? CAP Y01 402 B 1 HETATM 11 C CAQ Y01 . . . N 3 3.55 -20.316 35.222 1 69.04 ? CAQ Y01 402 B 1 HETATM 12 C CBG Y01 . . . N 3 2.856 -21.392 36.039 1 68.19 ? CBG Y01 402 B 1 HETATM 13 C CBI Y01 . . . N 3 1.903 -22.012 35.008 1 69.45 ? CBI Y01 402 B 1 HETATM 14 C CAE Y01 . . . N 3 0.783 -21.048 34.589 1 65.8 ? CAE Y01 402 B 1 HETATM 15 C CAU Y01 . . . N 3 1.286 -23.268 35.648 1 68.93 ? CAU Y01 402 B 1 HETATM 16 C CAS Y01 . . . N 3 0.537 -22.908 36.945 1 67.85 ? CAS Y01 402 B 1 HETATM 17 C CBF Y01 . . . N 3 1.411 -22.1 37.938 1 72.84 ? CBF Y01 402 B 1 HETATM 18 C CBD Y01 . . . N 3 2.108 -20.896 37.273 1 67.98 ? CBD Y01 402 B 1 HETATM 19 C CAK Y01 . . . N 3 3.076 -20.207 38.219 1 69.78 ? CAK Y01 402 B 1 HETATM 20 C CAI Y01 . . . N 3 2.635 -20.181 39.537 1 75.89 ? CAI Y01 402 B 1 HETATM 21 C CAZ Y01 . . . N 3 1.522 -20.817 40.08 1 80.66 ? CAZ Y01 402 B 1 HETATM 22 C CAV Y01 . . . N 3 1.216 -20.661 41.573 1 85.66 ? CAV Y01 402 B 1 HETATM 23 C CBH Y01 . . . N 3 0.632 -21.725 39.214 1 77.07 ? CBH Y01 402 B 1 HETATM 24 C CAD Y01 . . . N 3 -0.693 -21.03 38.87 1 69.38 ? CAD Y01 402 B 1 HETATM 25 C CAT Y01 . . . N 3 0.363 -23.008 40.02 1 85.24 ? CAT Y01 402 B 1 HETATM 26 C CAR Y01 . . . N 3 -0.006 -22.754 41.491 1 90 ? CAR Y01 402 B 1 HETATM 27 C CBC Y01 . . . N 3 1.136 -22.057 42.222 1 93.75 ? CBC Y01 402 B 1 HETATM 28 O OAW Y01 . . . N 3 0.959 -22.06 43.67 1 105.09 ? OAW Y01 402 B 1 HETATM 29 C CAY Y01 . . . N 3 -0.233 -21.538 44.093 1 114.78 ? CAY Y01 402 B 1 HETATM 30 O OAG Y01 . . . N 3 -0.636 -20.463 43.648 1 121.47 ? OAG Y01 402 B 1 HETATM 31 C CAM Y01 . . . N 3 -1.046 -22.284 45.156 1 115.28 ? CAM Y01 402 B 1 HETATM 32 C CAL Y01 . . . N 3 -0.14 -22.698 46.318 1 109.9 ? CAL Y01 402 B 1 HETATM 33 C CAX Y01 . . . N 3 -0.94 -23.455 47.372 1 109.06 ? CAX Y01 402 B 1 HETATM 34 O OAH Y01 . . . N 3 -1.161 -24.669 47.152 1 105.75 ? OAH Y01 402 B 1 HETATM 35 O OAF Y01 . . . N 3 -1.314 -22.795 48.368 1 111.49 ? OAF Y01 402 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 35 #