data_3ZPR
#
_model_server_result.job_id            BYs5J_2uYu2sKQ8u8_wDPg 
_model_server_result.datetime_utc      '2024-11-21 15:13:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3zpr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":501}' 
#
_entry.id    3ZPR 
#
_exptl.entry_id    3ZPR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              379.489 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            HEGA-10 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.2 
_cell.angle_gamma         90 
_cell.entry_id            3ZPR 
_cell.length_a            89.968 
_cell.length_b            60.812 
_cell.length_c            101.178 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ZPR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,U 1 1 
B,K,L,M,N,O,P,Q,R,S,T,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 P N N 
? 5 Q N N 
? 5 R N N 
? 5 S N N 
? 5 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
disulf ? disulf3 B SG CYS 84 B CYS 114 1_555 B SG CYS 169 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 162 B CYS 192 1_555 B SG CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc1 C NA NA . A NA 1 1_555 A OD1 ASP 57 A ASP 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc2 C NA NA . A NA 1 1_555 A OG SER 98 A SER 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc3 C NA NA . A NA 1 1_555 U O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc4 C NA NA . A NA 1 1_555 U O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? 
metalc ? metalc5 C NA NA . A NA 1 1_555 U O HOH . A HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc6 D NA NA . A NA 2 1_555 A O CYS 162 A CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc7 D NA NA . A NA 2 1_555 A O ASP 165 A ASP 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc8 D NA NA . A NA 2 1_555 A O CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc9 D NA NA . A NA 2 1_555 U O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc10 K NA NA . B NA 1 1_555 B OD1 ASP 57 B ASP 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc11 K NA NA . B NA 1 1_555 B OG SER 98 B SER 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc12 K NA NA . B NA 1 1_555 V O HOH . B HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc13 K NA NA . B NA 1 1_555 V O HOH . B HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc14 L NA NA . B NA 2 1_555 B O CYS 162 B CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc15 L NA NA . B NA 2 1_555 B O ASP 165 B ASP 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? 
metalc ? metalc16 L NA NA . B NA 2 1_555 B O CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc17 L NA NA . B NA 2 1_555 V O HOH . B HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
#
_chem_comp.formula           'C18 H37 N O7' 
_chem_comp.formula_weight    379.489 
_chem_comp.id                2CV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              HEGA-10 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 C12 2CV sing 1 n n 
C9 C1 2CV sing 2 n n 
C12 C15 2CV sing 3 n n 
C15 C18 2CV sing 4 n n 
C18 C21 2CV sing 5 n n 
C21 C24 2CV sing 6 n n 
C24 C27 2CV sing 7 n n 
C27 C30 2CV sing 8 n n 
C30 N33 2CV sing 9 n n 
C30 O34 2CV doub 10 n n 
N33 C35 2CV sing 11 n n 
N33 C36 2CV sing 12 n n 
C35 C60 2CV sing 13 n n 
C36 C37 2CV sing 14 n n 
C37 C40 2CV sing 15 n n 
C37 O47 2CV sing 16 n n 
C40 C41 2CV sing 17 n n 
C40 O49 2CV sing 18 n n 
C41 C42 2CV sing 19 n n 
C41 O51 2CV sing 20 n n 
C42 C43 2CV sing 21 n n 
C42 O53 2CV sing 22 n n 
C43 O44 2CV sing 23 n n 
C60 O63 2CV sing 24 n n 
C1 C0 2CV sing 25 n n 
C9 H91C 2CV sing 26 n n 
C9 H92C 2CV sing 27 n n 
C12 H121 2CV sing 28 n n 
C12 H122 2CV sing 29 n n 
C1 H11C 2CV sing 30 n n 
C1 H12C 2CV sing 31 n n 
C15 H151 2CV sing 32 n n 
C15 H152 2CV sing 33 n n 
C18 H181 2CV sing 34 n n 
C18 H182 2CV sing 35 n n 
C21 H211 2CV sing 36 n n 
C21 H212 2CV sing 37 n n 
C24 H241 2CV sing 38 n n 
C24 H242 2CV sing 39 n n 
C27 H271 2CV sing 40 n n 
C27 H272 2CV sing 41 n n 
C35 H351 2CV sing 42 n n 
C35 H352 2CV sing 43 n n 
C36 H361 2CV sing 44 n n 
C36 H362 2CV sing 45 n n 
C60 H601 2CV sing 46 n n 
C60 H602 2CV sing 47 n n 
C37 H37 2CV sing 48 n n 
C40 H40 2CV sing 49 n n 
O47 H47 2CV sing 50 n n 
C41 H41 2CV sing 51 n n 
O49 H49 2CV sing 52 n n 
C42 H42 2CV sing 53 n n 
O51 H51 2CV sing 54 n n 
C43 H431 2CV sing 55 n n 
C43 H432 2CV sing 56 n n 
O53 H53 2CV sing 57 n n 
O44 H44 2CV sing 58 n n 
O63 H63 2CV sing 59 n n 
C0 H01C 2CV sing 60 n n 
C0 H02C 2CV sing 61 n n 
C0 H03C 2CV sing 62 n n 
#
_atom_sites.entry_id                     3ZPR 
_atom_sites.fract_transf_matrix[1][1]    0.011115 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003871 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016444 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010466 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 1 1 NA NA . 
D 2 NA A 1 2 2 NA NA . 
E 3 Y01 A 1 401 401 Y01 Y01 . 
F 3 Y01 A 1 402 402 Y01 Y01 . 
G 4 3WC A 1 500 500 3WC 3WC . 
H 5 2CV A 1 501 501 2CV 2CV . 
I 5 2CV A 1 502 502 2CV 2CV . 
J 5 2CV A 1 503 503 2CV 2CV . 
K 2 NA B 1 1 1 NA NA . 
L 2 NA B 1 2 2 NA NA . 
M 3 Y01 B 1 401 401 Y01 Y01 . 
N 3 Y01 B 1 402 402 Y01 Y01 . 
O 4 3WC B 1 500 500 3WC 3WC . 
P 5 2CV B 1 501 501 2CV 2CV . 
Q 5 2CV B 1 502 502 2CV 2CV . 
R 5 2CV B 1 503 503 2CV 2CV . 
S 5 2CV B 1 505 505 2CV 2CV . 
T 5 2CV B 1 506 506 2CV 2CV . 
U 6 HOH A 1 2001 2001 HOH HOH . 
U 6 HOH A 2 2002 2002 HOH HOH . 
U 6 HOH A 3 2003 2003 HOH HOH . 
U 6 HOH A 4 2004 2004 HOH HOH . 
U 6 HOH A 5 2005 2005 HOH HOH . 
U 6 HOH A 6 2006 2006 HOH HOH . 
U 6 HOH A 7 2007 2007 HOH HOH . 
U 6 HOH A 8 2008 2008 HOH HOH . 
U 6 HOH A 9 2009 2009 HOH HOH . 
U 6 HOH A 10 2010 2010 HOH HOH . 
U 6 HOH A 11 2011 2011 HOH HOH . 
U 6 HOH A 12 2012 2012 HOH HOH . 
U 6 HOH A 13 2013 2013 HOH HOH . 
U 6 HOH A 14 2014 2014 HOH HOH . 
U 6 HOH A 15 2015 2015 HOH HOH . 
U 6 HOH A 16 2016 2016 HOH HOH . 
U 6 HOH A 17 2017 2017 HOH HOH . 
U 6 HOH A 18 2018 2018 HOH HOH . 
V 6 HOH B 1 2001 2001 HOH HOH . 
V 6 HOH B 2 2002 2002 HOH HOH . 
V 6 HOH B 3 2003 2003 HOH HOH . 
V 6 HOH B 4 2004 2004 HOH HOH . 
V 6 HOH B 5 2005 2005 HOH HOH . 
V 6 HOH B 6 2006 2006 HOH HOH . 
V 6 HOH B 7 2007 2007 HOH HOH . 
V 6 HOH B 8 2008 2008 HOH HOH . 
V 6 HOH B 9 2009 2009 HOH HOH . 
V 6 HOH B 10 2010 2010 HOH HOH . 
V 6 HOH B 11 2011 2011 HOH HOH . 
V 6 HOH B 12 2012 2012 HOH HOH . 
V 6 HOH B 13 2013 2013 HOH HOH . 
V 6 HOH B 14 2014 2014 HOH HOH . 
V 6 HOH B 15 2015 2015 HOH HOH . 
V 6 HOH B 16 2016 2016 HOH HOH . 
V 6 HOH B 17 2017 2017 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C9 2CV . . . P 5 -4.03 -10.246 13.892 1 48.6 ? C9 2CV 501 B 1 
HETATM 2 C C12 2CV . . . P 5 -3.356 -10.054 12.52 1 47.66 ? C12 2CV 501 B 1 
HETATM 3 C C15 2CV . . . P 5 -4.249 -10.497 11.382 1 48.9 ? C15 2CV 501 B 1 
HETATM 4 C C18 2CV . . . P 5 -3.715 -9.998 10.046 1 54.26 ? C18 2CV 501 B 1 
HETATM 5 C C21 2CV . . . P 5 -4.582 -10.527 8.91 1 58.6 ? C21 2CV 501 B 1 
HETATM 6 C C24 2CV . . . P 5 -4.149 -9.876 7.599 1 62.09 ? C24 2CV 501 B 1 
HETATM 7 C C27 2CV . . . P 5 -3.113 -10.765 6.988 1 64.21 ? C27 2CV 501 B 1 
HETATM 8 C C30 2CV . . . P 5 -2.506 -10.132 5.754 1 68.84 ? C30 2CV 501 B 1 
HETATM 9 N N33 2CV . . . P 5 -1.835 -10.943 4.928 1 73.41 ? N33 2CV 501 B 1 
HETATM 10 O O34 2CV . . . P 5 -2.627 -8.924 5.573 1 69.83 ? O34 2CV 501 B 1 
HETATM 11 C C35 2CV . . . P 5 -1.68 -12.432 5.08 1 69.08 ? C35 2CV 501 B 1 
HETATM 12 C C36 2CV . . . P 5 -1.255 -10.386 3.695 1 77.88 ? C36 2CV 501 B 1 
HETATM 13 C C37 2CV . . . P 5 -0.371 -9.205 4.026 1 81.63 ? C37 2CV 501 B 1 
HETATM 14 C C40 2CV . . . P 5 -1.015 -7.93 3.544 1 82.84 ? C40 2CV 501 B 1 
HETATM 15 C C41 2CV . . . P 5 -0.413 -7.562 2.166 1 81.35 ? C41 2CV 501 B 1 
HETATM 16 C C42 2CV . . . P 5 -0.112 -6.076 1.955 1 75 ? C42 2CV 501 B 1 
HETATM 17 C C43 2CV . . . P 5 1.122 -5.614 2.733 1 73.11 ? C43 2CV 501 B 1 
HETATM 18 O O44 2CV . . . P 5 2.176 -5.281 1.82 1 72.22 ? O44 2CV 501 B 1 
HETATM 19 O O47 2CV . . . P 5 0.884 -9.334 3.358 1 91.11 ? O47 2CV 501 B 1 
HETATM 20 O O49 2CV . . . P 5 -0.81 -6.962 4.577 1 87.06 ? O49 2CV 501 B 1 
HETATM 21 O O51 2CV . . . P 5 -1.329 -7.981 1.141 1 92.05 ? O51 2CV 501 B 1 
HETATM 22 O O53 2CV . . . P 5 -1.265 -5.297 2.295 1 72.21 ? O53 2CV 501 B 1 
HETATM 23 C C60 2CV . . . P 5 -1.923 -13.048 6.464 1 60.96 ? C60 2CV 501 B 1 
HETATM 24 O O63 2CV . . . P 5 -2.918 -14.087 6.362 1 56.26 ? O63 2CV 501 B 1 
HETATM 25 C C1 2CV . . . P 5 -2.989 -10.396 15.002 1 48.72 ? C1 2CV 501 B 1 
HETATM 26 C C0 2CV . . . P 5 -3.588 -10.349 16.415 1 53.14 ? C0 2CV 501 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           39 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           355 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           26 
#