data_3ZPR # _model_server_result.job_id nkyp4XxP9OM0lUxZW6duyg _model_server_result.datetime_utc '2024-11-23 10:21:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zpr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":503}' # _entry.id 3ZPR # _exptl.entry_id 3ZPR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 379.489 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEGA-10 _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.2 _cell.angle_gamma 90 _cell.entry_id 3ZPR _cell.length_a 89.968 _cell.length_b 60.812 _cell.length_c 101.178 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,U 1 1 B,K,L,M,N,O,P,Q,R,S,T,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 J N N ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf3 B SG CYS 84 B CYS 114 1_555 B SG CYS 169 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 162 B CYS 192 1_555 B SG CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc1 C NA NA . A NA 1 1_555 A OD1 ASP 57 A ASP 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc2 C NA NA . A NA 1 1_555 A OG SER 98 A SER 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc3 C NA NA . A NA 1 1_555 U O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc4 C NA NA . A NA 1 1_555 U O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc5 C NA NA . A NA 1 1_555 U O HOH . A HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc6 D NA NA . A NA 2 1_555 A O CYS 162 A CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc7 D NA NA . A NA 2 1_555 A O ASP 165 A ASP 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc8 D NA NA . A NA 2 1_555 A O CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc9 D NA NA . A NA 2 1_555 U O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc10 K NA NA . B NA 1 1_555 B OD1 ASP 57 B ASP 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc11 K NA NA . B NA 1 1_555 B OG SER 98 B SER 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc12 K NA NA . B NA 1 1_555 V O HOH . B HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc13 K NA NA . B NA 1 1_555 V O HOH . B HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc14 L NA NA . B NA 2 1_555 B O CYS 162 B CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc15 L NA NA . B NA 2 1_555 B O ASP 165 B ASP 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc16 L NA NA . B NA 2 1_555 B O CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc17 L NA NA . B NA 2 1_555 V O HOH . B HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? # _chem_comp.formula 'C18 H37 N O7' _chem_comp.formula_weight 379.489 _chem_comp.id 2CV _chem_comp.mon_nstd_flag . _chem_comp.name HEGA-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C12 2CV sing 1 n n C9 C1 2CV sing 2 n n C12 C15 2CV sing 3 n n C15 C18 2CV sing 4 n n C18 C21 2CV sing 5 n n C21 C24 2CV sing 6 n n C24 C27 2CV sing 7 n n C27 C30 2CV sing 8 n n C30 N33 2CV sing 9 n n C30 O34 2CV doub 10 n n N33 C35 2CV sing 11 n n N33 C36 2CV sing 12 n n C35 C60 2CV sing 13 n n C36 C37 2CV sing 14 n n C37 C40 2CV sing 15 n n C37 O47 2CV sing 16 n n C40 C41 2CV sing 17 n n C40 O49 2CV sing 18 n n C41 C42 2CV sing 19 n n C41 O51 2CV sing 20 n n C42 C43 2CV sing 21 n n C42 O53 2CV sing 22 n n C43 O44 2CV sing 23 n n C60 O63 2CV sing 24 n n C1 C0 2CV sing 25 n n C9 H91C 2CV sing 26 n n C9 H92C 2CV sing 27 n n C12 H121 2CV sing 28 n n C12 H122 2CV sing 29 n n C1 H11C 2CV sing 30 n n C1 H12C 2CV sing 31 n n C15 H151 2CV sing 32 n n C15 H152 2CV sing 33 n n C18 H181 2CV sing 34 n n C18 H182 2CV sing 35 n n C21 H211 2CV sing 36 n n C21 H212 2CV sing 37 n n C24 H241 2CV sing 38 n n C24 H242 2CV sing 39 n n C27 H271 2CV sing 40 n n C27 H272 2CV sing 41 n n C35 H351 2CV sing 42 n n C35 H352 2CV sing 43 n n C36 H361 2CV sing 44 n n C36 H362 2CV sing 45 n n C60 H601 2CV sing 46 n n C60 H602 2CV sing 47 n n C37 H37 2CV sing 48 n n C40 H40 2CV sing 49 n n O47 H47 2CV sing 50 n n C41 H41 2CV sing 51 n n O49 H49 2CV sing 52 n n C42 H42 2CV sing 53 n n O51 H51 2CV sing 54 n n C43 H431 2CV sing 55 n n C43 H432 2CV sing 56 n n O53 H53 2CV sing 57 n n O44 H44 2CV sing 58 n n O63 H63 2CV sing 59 n n C0 H01C 2CV sing 60 n n C0 H02C 2CV sing 61 n n C0 H03C 2CV sing 62 n n # _atom_sites.entry_id 3ZPR _atom_sites.fract_transf_matrix[1][1] 0.011115 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003871 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010466 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 1 1 NA NA . D 2 NA A 1 2 2 NA NA . E 3 Y01 A 1 401 401 Y01 Y01 . F 3 Y01 A 1 402 402 Y01 Y01 . G 4 3WC A 1 500 500 3WC 3WC . H 5 2CV A 1 501 501 2CV 2CV . I 5 2CV A 1 502 502 2CV 2CV . J 5 2CV A 1 503 503 2CV 2CV . K 2 NA B 1 1 1 NA NA . L 2 NA B 1 2 2 NA NA . M 3 Y01 B 1 401 401 Y01 Y01 . N 3 Y01 B 1 402 402 Y01 Y01 . O 4 3WC B 1 500 500 3WC 3WC . P 5 2CV B 1 501 501 2CV 2CV . Q 5 2CV B 1 502 502 2CV 2CV . R 5 2CV B 1 503 503 2CV 2CV . S 5 2CV B 1 505 505 2CV 2CV . T 5 2CV B 1 506 506 2CV 2CV . U 6 HOH A 1 2001 2001 HOH HOH . U 6 HOH A 2 2002 2002 HOH HOH . U 6 HOH A 3 2003 2003 HOH HOH . U 6 HOH A 4 2004 2004 HOH HOH . U 6 HOH A 5 2005 2005 HOH HOH . U 6 HOH A 6 2006 2006 HOH HOH . U 6 HOH A 7 2007 2007 HOH HOH . U 6 HOH A 8 2008 2008 HOH HOH . U 6 HOH A 9 2009 2009 HOH HOH . U 6 HOH A 10 2010 2010 HOH HOH . U 6 HOH A 11 2011 2011 HOH HOH . U 6 HOH A 12 2012 2012 HOH HOH . U 6 HOH A 13 2013 2013 HOH HOH . U 6 HOH A 14 2014 2014 HOH HOH . U 6 HOH A 15 2015 2015 HOH HOH . U 6 HOH A 16 2016 2016 HOH HOH . U 6 HOH A 17 2017 2017 HOH HOH . U 6 HOH A 18 2018 2018 HOH HOH . V 6 HOH B 1 2001 2001 HOH HOH . V 6 HOH B 2 2002 2002 HOH HOH . V 6 HOH B 3 2003 2003 HOH HOH . V 6 HOH B 4 2004 2004 HOH HOH . V 6 HOH B 5 2005 2005 HOH HOH . V 6 HOH B 6 2006 2006 HOH HOH . V 6 HOH B 7 2007 2007 HOH HOH . V 6 HOH B 8 2008 2008 HOH HOH . V 6 HOH B 9 2009 2009 HOH HOH . V 6 HOH B 10 2010 2010 HOH HOH . V 6 HOH B 11 2011 2011 HOH HOH . V 6 HOH B 12 2012 2012 HOH HOH . V 6 HOH B 13 2013 2013 HOH HOH . V 6 HOH B 14 2014 2014 HOH HOH . V 6 HOH B 15 2015 2015 HOH HOH . V 6 HOH B 16 2016 2016 HOH HOH . V 6 HOH B 17 2017 2017 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 2CV . . . R 5 2.901 -3.45 50.438 1 66.66 ? C9 2CV 503 B 1 HETATM 2 C C12 2CV . . . R 5 1.874 -2.408 49.949 1 67.2 ? C12 2CV 503 B 1 HETATM 3 C C15 2CV . . . R 5 0.418 -2.665 50.449 1 72.04 ? C15 2CV 503 B 1 HETATM 4 C C18 2CV . . . R 5 0.263 -2.812 51.971 1 70.94 ? C18 2CV 503 B 1 HETATM 5 C C21 2CV . . . R 5 -1.021 -3.565 52.376 1 74.92 ? C21 2CV 503 B 1 HETATM 6 C C24 2CV . . . R 5 -1.062 -4.995 51.791 1 84.02 ? C24 2CV 503 B 1 HETATM 7 C C27 2CV . . . R 5 -1.802 -6.05 52.65 1 88.28 ? C27 2CV 503 B 1 HETATM 8 C C30 2CV . . . R 5 -3.327 -5.836 52.801 1 90.91 ? C30 2CV 503 B 1 HETATM 9 N N33 2CV . . . R 5 -3.921 -6.628 53.695 1 88.74 ? N33 2CV 503 B 1 HETATM 10 O O34 2CV . . . R 5 -3.937 -4.996 52.14 1 95.1 ? O34 2CV 503 B 1 HETATM 11 C C1 2CV . . . R 5 3.667 -4.203 49.322 1 61.62 ? C1 2CV 503 B 1 HETATM 12 C C0 2CV . . . R 5 3.775 -5.719 49.644 1 59.63 ? C0 2CV 503 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #