data_3ZQ0 # _model_server_result.job_id CwxV9wdBy4mvzDgTvoq10Q _model_server_result.datetime_utc '2024-10-18 11:21:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zq0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":550}' # _entry.id 3ZQ0 # _exptl.entry_id 3ZQ0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ZQ0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZQ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 21-meric _pdbx_struct_assembly.oligomeric_count 21 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 W N N ? 4 Y N N ? 4 AA N N ? 4 CA N N ? 4 EA N N ? 4 GA N N ? 4 IA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 V O1B ADP . A ADP 1 1_555 W MG MG . A MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc2 V O2A ADP . A ADP 1 1_555 W MG MG . A MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc3 A OD1 ASP 86 A ASP 87 1_555 W MG MG . A MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc4 A OD2 ASP 86 A ASP 87 1_555 W MG MG . A MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc5 X O1B ADP . B ADP 1 1_555 Y MG MG . B MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc6 X O2A ADP . B ADP 1 1_555 Y MG MG . B MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc7 B OD1 ASP 86 B ASP 87 1_555 Y MG MG . B MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc8 B O SER 150 B SER 151 1_555 Y MG MG . B MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? metalc ? metalc9 Z O1B ADP . C ADP 1 1_555 AA MG MG . C MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc10 Z O2A ADP . C ADP 1 1_555 AA MG MG . C MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc11 C OD1 ASP 86 C ASP 87 1_555 AA MG MG . C MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc12 BA O2A ADP . D ADP 1 1_555 CA MG MG . D MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc13 D OD1 ASP 86 D ASP 87 1_555 CA MG MG . D MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc14 D OD2 ASP 86 D ASP 87 1_555 CA MG MG . D MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? metalc ? metalc15 D O SER 150 D SER 151 1_555 CA MG MG . D MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc16 DA O1B ADP . E ADP 1 1_555 EA MG MG . E MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc17 DA O2A ADP . E ADP 1 1_555 EA MG MG . E MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc18 E OD1 ASP 86 E ASP 87 1_555 EA MG MG . E MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc19 E O SER 150 E SER 151 1_555 EA MG MG . E MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc20 FA O2A ADP . F ADP 1 1_555 GA MG MG . F MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc21 FA O3B ADP . F ADP 1 1_555 GA MG MG . F MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc22 F OD1 ASP 86 F ASP 87 1_555 GA MG MG . F MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc23 HA O2A ADP . G ADP 1 1_555 IA MG MG . G MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc24 HA O1B ADP . G ADP 1 1_555 IA MG MG . G MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc25 G OD1 ASP 86 G ASP 87 1_555 IA MG MG . G MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3ZQ0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code V 3 ADP A 1 1 1 ADP ADP . W 4 MG A 1 550 550 MG MG . X 3 ADP B 1 1 1 ADP ADP . Y 4 MG B 1 550 550 MG MG . Z 3 ADP C 1 1 1 ADP ADP . AA 4 MG C 1 550 550 MG MG . BA 3 ADP D 1 1 1 ADP ADP . CA 4 MG D 1 550 550 MG MG . DA 3 ADP E 1 1 1 ADP ADP . EA 4 MG E 1 550 550 MG MG . FA 3 ADP F 1 1 1 ADP ADP . GA 4 MG F 1 550 550 MG MG . HA 3 ADP G 1 1 1 ADP ADP . IA 4 MG G 1 550 550 MG MG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Y _atom_site.label_entity_id 4 _atom_site.Cartn_x -7.578 _atom_site.Cartn_y -50.77 _atom_site.Cartn_z -10.854 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 0 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 550 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 110 _model_server_stats.parse_time_ms 50 _model_server_stats.create_model_time_ms 71 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #