data_3ZQR
#
_model_server_result.job_id            7S1qhwy5CLlp2CBzEogg3g 
_model_server_result.datetime_utc      '2024-11-26 23:01:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3zqr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":1022}' 
#
_entry.id    3ZQR 
#
_exptl.entry_id    3ZQR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.111 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHENOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.19 
_cell.angle_gamma         90 
_cell.entry_id            3ZQR 
_cell.length_a            46.6 
_cell.length_b            61.837 
_cell.length_c            58.224 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ZQR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 M N N 
? 3 P N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf4 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf5 C SG CYS 7 C CYS 7 1_555 D SG CYS 7 D CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf6 C SG CYS 20 C CYS 20 1_555 D SG CYS 19 D CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
disulf ? disulf7 E SG CYS 6 E CYS 6 1_555 E SG CYS 11 E CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf8 E SG CYS 7 E CYS 7 1_555 F SG CYS 7 F CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf9 E SG CYS 20 E CYS 20 1_555 F SG CYS 19 F CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf10 G SG CYS 6 G CYS 6 1_555 G SG CYS 11 G CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf11 G SG CYS 7 G CYS 7 1_555 H SG CYS 7 H CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf12 G SG CYS 20 G CYS 20 1_555 H SG CYS 19 H CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf13 I SG CYS 6 I CYS 6 1_555 I SG CYS 11 I CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
disulf ? disulf14 I SG CYS 7 I CYS 7 1_555 J SG CYS 7 J CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
disulf ? disulf15 I SG CYS 20 I CYS 20 1_555 J SG CYS 19 J CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf16 K SG CYS 6 K CYS 6 1_555 K SG CYS 11 K CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf17 K SG CYS 7 K CYS 7 1_555 L SG CYS 7 L CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
disulf ? disulf18 K SG CYS 20 K CYS 20 1_555 L SG CYS 19 L CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
covale ? covale1 B C PHE 24 B PHE 24 1_555 B N MEA 25 B MEA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale2 B C MEA 25 B MEA 25 1_555 B N TYR 26 B TYR 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale3 D C PHE 24 D PHE 24 1_555 D N MEA 25 D MEA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale4 D C MEA 25 D MEA 25 1_555 D N TYR 26 D TYR 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? 
covale ? covale5 F C PHE 24 F PHE 24 1_555 F N MEA 25 F MEA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale6 F C MEA 25 F MEA 25 1_555 F N TYR 26 F TYR 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 H C PHE 24 H PHE 24 1_555 H N MEA 25 H MEA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale8 H C MEA 25 H MEA 25 1_555 H N TYR 26 H TYR 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale9 J C PHE 24 J PHE 24 1_555 J N MEA 25 J MEA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale10 J C MEA 25 J MEA 25 1_555 J N TYR 26 J TYR 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? 
covale ? covale11 L C PHE 24 L PHE 24 1_555 L N MEA 25 L MEA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale12 L C MEA 25 L MEA 25 1_555 L N TYR 26 L TYR 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
metalc ? metalc1 B NE2 HIS 10 B HIS 10 1_555 N ZN ZN . B ZN 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc2 N ZN ZN . B ZN 1030 1_555 O CL CL . B CL 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc3 N ZN ZN . B ZN 1030 1_555 F NE2 HIS 10 F HIS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
metalc ? metalc4 N ZN ZN . B ZN 1030 1_555 J NE2 HIS 10 J HIS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc5 D NE2 HIS 10 D HIS 10 1_555 Q ZN ZN . D ZN 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc6 Q ZN ZN . D ZN 1029 1_555 R CL CL . D CL 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc7 Q ZN ZN . D ZN 1029 1_555 H NE2 HIS 10 H HIS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? 
metalc ? metalc8 Q ZN ZN . D ZN 1029 1_555 L NE2 HIS 10 L HIS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
#
_chem_comp.formula           'C6 H6 O' 
_chem_comp.formula_weight    94.111 
_chem_comp.id                IPH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHENOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 IPH doub 158 n y 
C1 C6 IPH sing 159 n y 
C1 O1 IPH sing 160 n n 
C2 C3 IPH sing 161 n y 
C2 H2 IPH sing 162 n n 
C3 C4 IPH doub 163 n y 
C3 H3 IPH sing 164 n n 
C4 C5 IPH sing 165 n y 
C4 H4 IPH sing 166 n n 
C5 C6 IPH doub 167 n y 
C5 H5 IPH sing 168 n n 
C6 H6 IPH sing 169 n n 
O1 HO1 IPH sing 170 n n 
#
_atom_sites.entry_id                     3ZQR 
_atom_sites.fract_transf_matrix[1][1]    0.021459 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008319 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016172 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018421 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 IPH A 1 1022 1022 IPH IPH . 
N 4 ZN B 1 1030 1030 ZN ZN . 
O 5 CL B 1 1031 1031 CL CL . 
P 3 IPH C 1 1022 1022 IPH IPH . 
Q 4 ZN D 1 1029 1029 ZN ZN . 
R 5 CL D 1 1030 1030 CL CL . 
S 3 IPH E 1 1022 1022 IPH IPH . 
T 3 IPH H 1 1029 1029 IPH IPH . 
U 3 IPH I 1 1022 1022 IPH IPH . 
V 3 IPH K 1 1022 1022 IPH IPH . 
W 6 HOH A 1 2001 2001 HOH HOH . 
W 6 HOH A 2 2002 2002 HOH HOH . 
W 6 HOH A 3 2003 2003 HOH HOH . 
W 6 HOH A 4 2004 2004 HOH HOH . 
W 6 HOH A 5 2005 2005 HOH HOH . 
W 6 HOH A 6 2006 2006 HOH HOH . 
W 6 HOH A 7 2007 2007 HOH HOH . 
W 6 HOH A 8 2008 2008 HOH HOH . 
X 6 HOH B 1 2001 2001 HOH HOH . 
X 6 HOH B 2 2002 2002 HOH HOH . 
X 6 HOH B 3 2003 2003 HOH HOH . 
X 6 HOH B 4 2004 2004 HOH HOH . 
X 6 HOH B 5 2005 2005 HOH HOH . 
X 6 HOH B 6 2006 2006 HOH HOH . 
X 6 HOH B 7 2007 2007 HOH HOH . 
X 6 HOH B 8 2008 2008 HOH HOH . 
X 6 HOH B 9 2009 2009 HOH HOH . 
X 6 HOH B 10 2010 2010 HOH HOH . 
X 6 HOH B 11 2011 2011 HOH HOH . 
X 6 HOH B 12 2012 2012 HOH HOH . 
X 6 HOH B 13 2013 2013 HOH HOH . 
X 6 HOH B 14 2014 2014 HOH HOH . 
X 6 HOH B 15 2015 2015 HOH HOH . 
X 6 HOH B 16 2016 2016 HOH HOH . 
X 6 HOH B 17 2017 2017 HOH HOH . 
X 6 HOH B 18 2018 2018 HOH HOH . 
X 6 HOH B 19 2019 2019 HOH HOH . 
X 6 HOH B 20 2020 2020 HOH HOH . 
X 6 HOH B 21 2021 2021 HOH HOH . 
X 6 HOH B 22 2022 2022 HOH HOH . 
X 6 HOH B 23 2023 2023 HOH HOH . 
X 6 HOH B 24 2024 2024 HOH HOH . 
X 6 HOH B 25 2025 2025 HOH HOH . 
Y 6 HOH C 1 2001 2001 HOH HOH . 
Y 6 HOH C 2 2002 2002 HOH HOH . 
Y 6 HOH C 3 2003 2003 HOH HOH . 
Y 6 HOH C 4 2004 2004 HOH HOH . 
Y 6 HOH C 5 2005 2005 HOH HOH . 
Y 6 HOH C 6 2006 2006 HOH HOH . 
Y 6 HOH C 7 2007 2007 HOH HOH . 
Y 6 HOH C 8 2008 2008 HOH HOH . 
Z 6 HOH D 1 2001 2001 HOH HOH . 
Z 6 HOH D 2 2002 2002 HOH HOH . 
Z 6 HOH D 3 2003 2003 HOH HOH . 
Z 6 HOH D 4 2004 2004 HOH HOH . 
Z 6 HOH D 5 2005 2005 HOH HOH . 
Z 6 HOH D 6 2006 2006 HOH HOH . 
Z 6 HOH D 7 2007 2007 HOH HOH . 
Z 6 HOH D 8 2008 2008 HOH HOH . 
Z 6 HOH D 9 2009 2009 HOH HOH . 
Z 6 HOH D 10 2010 2010 HOH HOH . 
Z 6 HOH D 11 2011 2011 HOH HOH . 
Z 6 HOH D 12 2012 2012 HOH HOH . 
Z 6 HOH D 13 2013 2013 HOH HOH . 
Z 6 HOH D 14 2014 2014 HOH HOH . 
AA 6 HOH E 1 2001 2001 HOH HOH . 
BA 6 HOH F 1 2001 2001 HOH HOH . 
BA 6 HOH F 2 2002 2002 HOH HOH . 
BA 6 HOH F 3 2003 2003 HOH HOH . 
BA 6 HOH F 4 2004 2004 HOH HOH . 
BA 6 HOH F 5 2005 2005 HOH HOH . 
BA 6 HOH F 6 2006 2006 HOH HOH . 
BA 6 HOH F 7 2007 2007 HOH HOH . 
BA 6 HOH F 8 2008 2008 HOH HOH . 
CA 6 HOH G 1 2001 2001 HOH HOH . 
CA 6 HOH G 2 2002 2002 HOH HOH . 
CA 6 HOH G 3 2003 2003 HOH HOH . 
CA 6 HOH G 4 2004 2004 HOH HOH . 
CA 6 HOH G 5 2005 2005 HOH HOH . 
DA 6 HOH H 1 2001 2001 HOH HOH . 
DA 6 HOH H 2 2002 2002 HOH HOH . 
DA 6 HOH H 3 2003 2003 HOH HOH . 
DA 6 HOH H 4 2004 2004 HOH HOH . 
DA 6 HOH H 5 2005 2005 HOH HOH . 
DA 6 HOH H 6 2006 2006 HOH HOH . 
EA 6 HOH I 1 2001 2001 HOH HOH . 
EA 6 HOH I 2 2002 2002 HOH HOH . 
EA 6 HOH I 3 2003 2003 HOH HOH . 
EA 6 HOH I 4 2004 2004 HOH HOH . 
EA 6 HOH I 5 2005 2005 HOH HOH . 
EA 6 HOH I 6 2006 2006 HOH HOH . 
EA 6 HOH I 7 2007 2007 HOH HOH . 
EA 6 HOH I 8 2008 2008 HOH HOH . 
EA 6 HOH I 9 2009 2009 HOH HOH . 
EA 6 HOH I 10 2010 2010 HOH HOH . 
EA 6 HOH I 11 2011 2011 HOH HOH . 
EA 6 HOH I 12 2012 2012 HOH HOH . 
EA 6 HOH I 13 2013 2013 HOH HOH . 
EA 6 HOH I 14 2014 2014 HOH HOH . 
FA 6 HOH J 1 2001 2001 HOH HOH . 
FA 6 HOH J 2 2002 2002 HOH HOH . 
FA 6 HOH J 3 2003 2003 HOH HOH . 
FA 6 HOH J 4 2004 2004 HOH HOH . 
FA 6 HOH J 5 2005 2005 HOH HOH . 
FA 6 HOH J 6 2006 2006 HOH HOH . 
FA 6 HOH J 7 2007 2007 HOH HOH . 
FA 6 HOH J 8 2008 2008 HOH HOH . 
FA 6 HOH J 9 2009 2009 HOH HOH . 
GA 6 HOH K 1 2001 2001 HOH HOH . 
GA 6 HOH K 2 2002 2002 HOH HOH . 
GA 6 HOH K 3 2003 2003 HOH HOH . 
GA 6 HOH K 4 2004 2004 HOH HOH . 
HA 6 HOH L 1 2001 2001 HOH HOH . 
HA 6 HOH L 2 2002 2002 HOH HOH . 
HA 6 HOH L 3 2003 2003 HOH HOH . 
HA 6 HOH L 4 2004 2004 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 IPH . . . V 3 9.363 3.734 -0.295 1 35.72 ? C1 IPH 1022 K 1 
HETATM 2 C C2 IPH . . . V 3 9.282 4.495 0.886 1 32.57 ? C2 IPH 1022 K 1 
HETATM 3 C C3 IPH . . . V 3 9.097 3.857 2.133 1 29.91 ? C3 IPH 1022 K 1 
HETATM 4 C C4 IPH . . . V 3 9.006 2.448 2.15 1 30.57 ? C4 IPH 1022 K 1 
HETATM 5 C C5 IPH . . . V 3 9.103 1.71 0.968 1 33.08 ? C5 IPH 1022 K 1 
HETATM 6 C C6 IPH . . . V 3 9.265 2.358 -0.255 1 39.32 ? C6 IPH 1022 K 1 
HETATM 7 O O1 IPH . . . V 3 9.512 4.348 -1.512 1 48.56 ? O1 IPH 1022 K 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           378 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#