data_3ZSW
#
_model_server_result.job_id            1asCkbdFkVEaC1B4jMo5FQ 
_model_server_result.datetime_utc      '2024-11-08 04:29:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3zsw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":308}' 
#
_entry.id    3ZSW 
#
_exptl.entry_id    3ZSW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              511.587 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (R)-[2-[[(2R)-butan-2-yl]carbamoyl]phenyl]methyl-[[(2S)-5-carboxy-2-(2-carboxyethyl)-2,3-dihydro-1,4-benzodioxin-6-yl]methyl]-prop-2-enyl-azanium 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3ZSW 
_cell.length_a            70.999 
_cell.length_b            70.999 
_cell.length_c            66.602 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ZSW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 J N N 
? 7 Q N N 
#
_chem_comp.formula           'C28 H35 N2 O7 1' 
_chem_comp.formula_weight    511.587 
_chem_comp.id                ZSW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (R)-[2-[[(2R)-butan-2-yl]carbamoyl]phenyl]methyl-[[(2S)-5-carboxy-2-(2-carboxyethyl)-2,3-dihydro-1,4-benzodioxin-6-yl]methyl]-prop-2-enyl-azanium 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 ZSW sing 400 n y 
C1 C3 ZSW doub 401 n y 
C2 C4 ZSW doub 402 n y 
C3 C7 ZSW sing 403 n y 
C4 C9 ZSW sing 404 n y 
C5 C6 ZSW sing 405 n y 
C5 C10 ZSW doub 406 n y 
C6 C11 ZSW doub 407 n y 
C7 C9 ZSW doub 408 n y 
C7 C15 ZSW sing 409 n n 
C8 C10 ZSW sing 410 n y 
C8 C12 ZSW doub 411 n y 
C8 C16 ZSW sing 412 n n 
C9 C26 ZSW sing 413 n n 
C10 C27 ZSW sing 414 n n 
C11 C12 ZSW sing 415 n y 
C11 O40 ZSW sing 416 n n 
C12 O39 ZSW sing 417 n n 
C13 C14 ZSW doub 418 n n 
C14 C28 ZSW sing 419 n n 
C15 N32 ZSW sing 420 n n 
C15 O36 ZSW doub 421 n n 
C16 O34 ZSW doub 422 n n 
C16 O37 ZSW sing 423 n n 
C17 C29 ZSW sing 424 n n 
C17 O35 ZSW doub 425 n n 
C17 O38 ZSW sing 426 n n 
C18 C20 ZSW sing 427 n n 
C18 C19 ZSW sing 428 n n 
C20 C22 ZSW sing 429 n n 
C20 N32 ZSW sing 430 n n 
C23 C25 ZSW sing 431 n n 
C23 O39 ZSW sing 432 n n 
C25 C31 ZSW sing 433 n n 
C25 O40 ZSW sing 434 n n 
C26 N33 ZSW sing 435 n n 
C27 N33 ZSW sing 436 n n 
C28 N33 ZSW sing 437 n n 
C29 C31 ZSW sing 438 n n 
C1 H1 ZSW sing 439 n n 
C2 H2 ZSW sing 440 n n 
C3 H3 ZSW sing 441 n n 
C4 H4 ZSW sing 442 n n 
C5 H5 ZSW sing 443 n n 
C6 H6 ZSW sing 444 n n 
C26 H261 ZSW sing 445 n n 
C26 H262 ZSW sing 446 n n 
C27 H271 ZSW sing 447 n n 
C27 H272 ZSW sing 448 n n 
C13 H131 ZSW sing 449 n n 
C13 H132 ZSW sing 450 n n 
C14 H14 ZSW sing 451 n n 
C28 H281 ZSW sing 452 n n 
C28 H282 ZSW sing 453 n n 
N32 H32 ZSW sing 454 n n 
O37 H37 ZSW sing 455 n n 
C29 H291 ZSW sing 456 n n 
C29 H292 ZSW sing 457 n n 
O38 H38 ZSW sing 458 n n 
C18 H181 ZSW sing 459 n n 
C18 H182 ZSW sing 460 n n 
C20 H20 ZSW sing 461 n n 
C19 H191 ZSW sing 462 n n 
C19 H192 ZSW sing 463 n n 
C19 H193 ZSW sing 464 n n 
C22 H221 ZSW sing 465 n n 
C22 H222 ZSW sing 466 n n 
C22 H223 ZSW sing 467 n n 
C23 H231 ZSW sing 468 n n 
C23 H232 ZSW sing 469 n n 
C25 H25 ZSW sing 470 n n 
C31 H311 ZSW sing 471 n n 
C31 H312 ZSW sing 472 n n 
N33 H33 ZSW sing 473 n n 
#
_atom_sites.entry_id                     3ZSW 
_atom_sites.fract_transf_matrix[1][1]    0.014085 
_atom_sites.fract_transf_matrix[1][2]    0.008132 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016264 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015015 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 THR A 1 301 210 THR THR . 
D 3 SO4 A 1 302 1211 SO4 SO4 . 
E 3 SO4 A 1 303 1212 SO4 SO4 . 
F 3 SO4 A 1 304 1213 SO4 SO4 . 
G 4 CL A 1 305 1214 CL CL . 
H 5 ACY A 1 306 1215 ACY ACY . 
I 6 GOL A 1 307 1216 GOL GOL . 
J 7 ZSW A 1 308 1217 ZSW ZSW . 
K 2 THR B 1 301 210 THR THR . 
L 3 SO4 B 1 302 1211 SO4 SO4 . 
M 3 SO4 B 1 303 1212 SO4 SO4 . 
N 3 SO4 B 1 304 1213 SO4 SO4 . 
O 4 CL B 1 305 1214 CL CL . 
P 6 GOL B 1 306 1215 GOL GOL . 
Q 7 ZSW B 1 307 1216 ZSW ZSW . 
R 8 HOH A 1 401 2046 HOH HOH . 
R 8 HOH A 2 402 2017 HOH HOH . 
R 8 HOH A 3 403 2009 HOH HOH . 
R 8 HOH A 4 404 2015 HOH HOH . 
R 8 HOH A 5 405 2064 HOH HOH . 
R 8 HOH A 6 406 2034 HOH HOH . 
R 8 HOH A 7 407 2045 HOH HOH . 
R 8 HOH A 8 408 2003 HOH HOH . 
R 8 HOH A 9 409 2019 HOH HOH . 
R 8 HOH A 10 410 2038 HOH HOH . 
R 8 HOH A 11 411 2059 HOH HOH . 
R 8 HOH A 12 412 2025 HOH HOH . 
R 8 HOH A 13 413 2002 HOH HOH . 
R 8 HOH A 14 414 2018 HOH HOH . 
R 8 HOH A 15 415 2054 HOH HOH . 
R 8 HOH A 16 416 2021 HOH HOH . 
R 8 HOH A 17 417 2044 HOH HOH . 
R 8 HOH A 18 418 2014 HOH HOH . 
R 8 HOH A 19 419 2027 HOH HOH . 
R 8 HOH A 20 420 2056 HOH HOH . 
R 8 HOH A 21 421 2035 HOH HOH . 
R 8 HOH A 22 422 2055 HOH HOH . 
R 8 HOH A 23 423 2042 HOH HOH . 
R 8 HOH A 24 424 2008 HOH HOH . 
R 8 HOH A 25 425 2043 HOH HOH . 
R 8 HOH A 26 426 2022 HOH HOH . 
R 8 HOH A 27 427 2007 HOH HOH . 
R 8 HOH A 28 428 2067 HOH HOH . 
R 8 HOH A 29 429 2033 HOH HOH . 
R 8 HOH A 30 430 2057 HOH HOH . 
R 8 HOH A 31 431 2048 HOH HOH . 
R 8 HOH A 32 432 2049 HOH HOH . 
R 8 HOH A 33 433 2061 HOH HOH . 
R 8 HOH A 34 434 2063 HOH HOH . 
R 8 HOH A 35 435 2068 HOH HOH . 
R 8 HOH A 36 436 2037 HOH HOH . 
R 8 HOH A 37 437 2062 HOH HOH . 
R 8 HOH A 38 438 2005 HOH HOH . 
R 8 HOH A 39 439 2053 HOH HOH . 
R 8 HOH A 40 440 2051 HOH HOH . 
R 8 HOH A 41 441 2052 HOH HOH . 
R 8 HOH A 42 442 2060 HOH HOH . 
R 8 HOH A 43 443 2026 HOH HOH . 
R 8 HOH A 44 444 2069 HOH HOH . 
R 8 HOH A 45 445 2001 HOH HOH . 
R 8 HOH A 46 446 2050 HOH HOH . 
R 8 HOH A 47 447 2006 HOH HOH . 
R 8 HOH A 48 448 2016 HOH HOH . 
R 8 HOH A 49 449 2039 HOH HOH . 
R 8 HOH A 50 450 2024 HOH HOH . 
R 8 HOH A 51 451 2047 HOH HOH . 
R 8 HOH A 52 452 2036 HOH HOH . 
R 8 HOH A 53 453 2010 HOH HOH . 
R 8 HOH A 54 454 2028 HOH HOH . 
R 8 HOH A 55 455 2023 HOH HOH . 
R 8 HOH A 56 456 2066 HOH HOH . 
R 8 HOH A 57 457 2004 HOH HOH . 
R 8 HOH A 58 458 2012 HOH HOH . 
R 8 HOH A 59 459 2011 HOH HOH . 
R 8 HOH A 60 460 2029 HOH HOH . 
R 8 HOH A 61 461 2040 HOH HOH . 
R 8 HOH A 62 462 2020 HOH HOH . 
R 8 HOH A 63 463 2020 HOH HOH . 
R 8 HOH A 64 464 2041 HOH HOH . 
R 8 HOH A 65 465 2013 HOH HOH . 
S 8 HOH B 1 401 2012 HOH HOH . 
S 8 HOH B 2 402 2039 HOH HOH . 
S 8 HOH B 3 403 2031 HOH HOH . 
S 8 HOH B 4 404 2031 HOH HOH . 
S 8 HOH B 5 405 2047 HOH HOH . 
S 8 HOH B 6 406 2018 HOH HOH . 
S 8 HOH B 7 407 2044 HOH HOH . 
S 8 HOH B 8 408 2021 HOH HOH . 
S 8 HOH B 9 409 2009 HOH HOH . 
S 8 HOH B 10 410 2049 HOH HOH . 
S 8 HOH B 11 411 2002 HOH HOH . 
S 8 HOH B 12 412 2025 HOH HOH . 
S 8 HOH B 13 413 2022 HOH HOH . 
S 8 HOH B 14 414 2030 HOH HOH . 
S 8 HOH B 15 415 2030 HOH HOH . 
S 8 HOH B 16 416 2041 HOH HOH . 
S 8 HOH B 17 417 2071 HOH HOH . 
S 8 HOH B 18 418 2042 HOH HOH . 
S 8 HOH B 19 419 2014 HOH HOH . 
S 8 HOH B 20 420 2050 HOH HOH . 
S 8 HOH B 21 421 2008 HOH HOH . 
S 8 HOH B 22 422 2043 HOH HOH . 
S 8 HOH B 23 423 2024 HOH HOH . 
S 8 HOH B 24 424 2029 HOH HOH . 
S 8 HOH B 25 425 2070 HOH HOH . 
S 8 HOH B 26 426 2065 HOH HOH . 
S 8 HOH B 27 427 2046 HOH HOH . 
S 8 HOH B 28 428 2040 HOH HOH . 
S 8 HOH B 29 429 2028 HOH HOH . 
S 8 HOH B 30 430 2058 HOH HOH . 
S 8 HOH B 31 431 2048 HOH HOH . 
S 8 HOH B 32 432 2045 HOH HOH . 
S 8 HOH B 33 433 2007 HOH HOH . 
S 8 HOH B 34 434 2032 HOH HOH . 
S 8 HOH B 35 435 2052 HOH HOH . 
S 8 HOH B 36 436 2004 HOH HOH . 
S 8 HOH B 37 437 2017 HOH HOH . 
S 8 HOH B 38 438 2001 HOH HOH . 
S 8 HOH B 39 439 2035 HOH HOH . 
S 8 HOH B 40 440 2034 HOH HOH . 
S 8 HOH B 41 441 2037 HOH HOH . 
S 8 HOH B 42 442 2006 HOH HOH . 
S 8 HOH B 43 443 2051 HOH HOH . 
S 8 HOH B 44 444 2036 HOH HOH . 
S 8 HOH B 45 445 2038 HOH HOH . 
S 8 HOH B 46 446 2011 HOH HOH . 
S 8 HOH B 47 447 2003 HOH HOH . 
S 8 HOH B 48 448 2016 HOH HOH . 
S 8 HOH B 49 449 2032 HOH HOH . 
S 8 HOH B 50 450 2026 HOH HOH . 
S 8 HOH B 51 451 2033 HOH HOH . 
S 8 HOH B 52 452 2023 HOH HOH . 
S 8 HOH B 53 453 2015 HOH HOH . 
S 8 HOH B 54 454 2005 HOH HOH . 
S 8 HOH B 55 455 2010 HOH HOH . 
S 8 HOH B 56 456 2019 HOH HOH . 
S 8 HOH B 57 457 2027 HOH HOH . 
S 8 HOH B 58 458 2013 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 ZSW . . . J 7 -9.826 47.592 4.875 1 31.07 ? C1 ZSW 308 A 1 
HETATM 2 C C2 ZSW . . . J 7 -10.675 48.52 4.307 1 31.32 ? C2 ZSW 308 A 1 
HETATM 3 C C3 ZSW . . . J 7 -8.989 46.843 4.075 1 30.24 ? C3 ZSW 308 A 1 
HETATM 4 C C4 ZSW . . . J 7 -10.694 48.695 2.937 1 31.06 ? C4 ZSW 308 A 1 
HETATM 5 C C5 ZSW . . . J 7 -11.633 44.992 -2.266 1 20.86 ? C5 ZSW 308 A 1 
HETATM 6 C C6 ZSW . . . J 7 -12.545 44.553 -3.207 1 19.78 ? C6 ZSW 308 A 1 
HETATM 7 C C7 ZSW . . . J 7 -9.017 47.018 2.71 1 31.71 ? C7 ZSW 308 A 1 
HETATM 8 C C8 ZSW . . . J 7 -13.394 45.497 -0.697 1 20.46 ? C8 ZSW 308 A 1 
HETATM 9 C C9 ZSW . . . J 7 -9.87 47.943 2.126 1 30.46 ? C9 ZSW 308 A 1 
HETATM 10 C C10 ZSW . . . J 7 -12.041 45.457 -1.026 1 20.58 ? C10 ZSW 308 A 1 
HETATM 11 C C11 ZSW . . . J 7 -13.883 44.601 -2.881 1 17.95 ? C11 ZSW 308 A 1 
HETATM 12 C C12 ZSW . . . J 7 -14.313 45.046 -1.64 1 18.48 ? C12 ZSW 308 A 1 
HETATM 13 C C13 ZSW . . . J 7 -10.376 49.985 -2.419 1 38.35 ? C13 ZSW 308 A 1 
HETATM 14 C C14 ZSW . . . J 7 -10.464 48.684 -2.125 1 34.48 ? C14 ZSW 308 A 1 
HETATM 15 C C15 ZSW . . . J 7 -8.118 46.162 1.908 1 33.99 ? C15 ZSW 308 A 1 
HETATM 16 C C16 ZSW . . . J 7 -13.848 45.958 0.643 1 22.13 ? C16 ZSW 308 A 1 
HETATM 17 C C17 ZSW . . . J 7 -16.883 45.558 -6.442 1 26.79 ? C17 ZSW 308 A 1 
HETATM 18 C C19 ZSW . . . J 7 -9.098 42.412 0.465 1 37.36 ? C19 ZSW 308 A 1 
HETATM 19 C C18 ZSW . . . J 7 -7.744 43.079 0.561 1 38.38 ? C18 ZSW 308 A 1 
HETATM 20 C C20 ZSW . . . J 7 -7.5 43.649 1.937 1 37.55 ? C20 ZSW 308 A 1 
HETATM 21 C C22 ZSW . . . J 7 -6.017 43.826 2.185 1 37.73 ? C22 ZSW 308 A 1 
HETATM 22 C C23 ZSW . . . J 7 -16.488 44.399 -2.234 1 20.29 ? C23 ZSW 308 A 1 
HETATM 23 C C25 ZSW . . . J 7 -16.054 44.683 -3.648 1 21.51 ? C25 ZSW 308 A 1 
HETATM 24 C C26 ZSW . . . J 7 -9.94 48.169 0.653 1 29.8 ? C26 ZSW 308 A 1 
HETATM 25 C C27 ZSW . . . J 7 -10.985 45.947 -0.081 1 23.15 ? C27 ZSW 308 A 1 
HETATM 26 C C28 ZSW . . . J 7 -11.535 48.178 -1.243 1 30.91 ? C28 ZSW 308 A 1 
HETATM 27 C C29 ZSW . . . J 7 -16.582 44.122 -6.045 1 23.27 ? C29 ZSW 308 A 1 
HETATM 28 C C31 ZSW . . . J 7 -17.027 44.009 -4.602 1 22.3 ? C31 ZSW 308 A 1 
HETATM 29 N N32 ZSW . . . J 7 -8.296 44.831 2.241 1 33.84 ? N32 ZSW 308 A 1 
HETATM 30 N N33 ZSW . . . J 7 -11.082 47.466 -0.004 1 28.79 ? N33 ZSW 308 A 1 
HETATM 31 O O37 ZSW . . . J 7 -14.706 45.214 1.219 1 19.39 ? O37 ZSW 308 A 1 
HETATM 32 O O35 ZSW . . . J 7 -17.939 46.078 -5.992 1 30.42 ? O35 ZSW 308 A 1 
HETATM 33 O O36 ZSW . . . J 7 -7.393 46.635 1.05 1 34.91 ? O36 ZSW 308 A 1 
HETATM 34 O O34 ZSW . . . J 7 -13.309 46.965 1.178 1 21 ? O34 ZSW 308 A 1 
HETATM 35 O O38 ZSW . . . J 7 -16.02 46.089 -7.191 1 25.64 ? O38 ZSW 308 A 1 
HETATM 36 O O39 ZSW . . . J 7 -15.667 45.11 -1.311 1 18.95 ? O39 ZSW 308 A 1 
HETATM 37 O O40 ZSW . . . J 7 -14.752 44.153 -3.844 1 19.67 ? O40 ZSW 308 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           37 
#