data_3ZSX # _model_server_result.job_id o6VLU_CVWYdn8W13yI7j9A _model_server_result.datetime_utc '2024-11-08 06:51:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zsx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1215}' # _entry.id 3ZSX # _exptl.entry_id 3ZSX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 457.498 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-({[2-(benzylcarbamoyl)benzyl](prop-2-en-1-yl)amino}methyl)-1,3-benzodioxole-4-carboxylate _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ZSX _cell.length_a 71.006 _cell.length_b 71.006 _cell.length_c 67.023 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZSX _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 P N N # _chem_comp.formula 'C27 H25 N2 O5 -1' _chem_comp.formula_weight 457.498 _chem_comp.id N44 _chem_comp.mon_nstd_flag . _chem_comp.name 5-({[2-(benzylcarbamoyl)benzyl](prop-2-en-1-yl)amino}methyl)-1,3-benzodioxole-4-carboxylate _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C3 N44 doub 265 n y C1 C4 N44 sing 266 n y C2 C5 N44 doub 267 n y C2 C6 N44 sing 268 n y C3 C7 N44 sing 269 n y C4 C8 N44 doub 270 n y C5 C9 N44 sing 271 n y C6 C12 N44 doub 272 n y C7 C14 N44 doub 273 n y C8 C14 N44 sing 274 n y C9 C15 N44 doub 275 n y C10 C11 N44 doub 276 n y C10 C16 N44 sing 277 n y C11 C17 N44 sing 278 n y C12 C15 N44 sing 279 n y C12 C21 N44 sing 280 n n C13 C16 N44 doub 281 n y C13 C18 N44 sing 282 n y C13 C22 N44 sing 283 n n C14 C24 N44 sing 284 n n C15 C25 N44 sing 285 n n C16 C26 N44 sing 286 n n C17 C18 N44 doub 287 n y C17 O33 N44 sing 288 n n C18 O34 N44 sing 289 n n C19 C20 N44 doub 290 n n C20 C27 N44 sing 291 n n C21 N28 N44 sing 292 n n C21 O31 N44 doub 293 n n C22 O30 N44 doub 294 n n C22 O32 N44 sing 295 n n C23 O33 N44 sing 296 n n C23 O34 N44 sing 297 n n C24 N28 N44 sing 298 n n C25 N29 N44 sing 299 n n C26 N29 N44 sing 300 n n C27 N29 N44 sing 301 n n C1 H1 N44 sing 302 n n C2 H2 N44 sing 303 n n C3 H3 N44 sing 304 n n C4 H4 N44 sing 305 n n C5 H5 N44 sing 306 n n C6 H6 N44 sing 307 n n C7 H7 N44 sing 308 n n C8 H8 N44 sing 309 n n C9 H9 N44 sing 310 n n C10 H10 N44 sing 311 n n C11 H11 N44 sing 312 n n C19 H19 N44 sing 313 n n C19 H19A N44 sing 314 n n C20 H20 N44 sing 315 n n C23 H23 N44 sing 316 n n C23 H23A N44 sing 317 n n C24 H24 N44 sing 318 n n C24 H24A N44 sing 319 n n C25 H25 N44 sing 320 n n C25 H25A N44 sing 321 n n C26 H26 N44 sing 322 n n C26 H26A N44 sing 323 n n C27 H27 N44 sing 324 n n C27 H27A N44 sing 325 n n N28 HN28 N44 sing 326 n n # _atom_sites.entry_id 3ZSX _atom_sites.fract_transf_matrix[1][1] 0.014083 _atom_sites.fract_transf_matrix[1][2] 0.008131 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016262 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1210 1210 SO4 SO4 . D 2 SO4 A 1 1211 1211 SO4 SO4 . E 2 SO4 A 1 1212 1212 SO4 SO4 . F 3 EDO A 1 1213 1213 EDO EDO . G 4 GOL A 1 1214 1214 GOL GOL . H 5 N44 A 1 1215 1215 N44 N44 . I 2 SO4 B 1 1210 1210 SO4 SO4 . J 2 SO4 B 1 1211 1211 SO4 SO4 . K 2 SO4 B 1 1212 1212 SO4 SO4 . L 6 ACT B 1 1213 1213 ACT ACT . M 6 ACT B 1 1214 1214 ACT ACT . N 3 EDO B 1 1215 1215 EDO EDO . O 4 GOL B 1 1216 1216 GOL GOL . P 5 N44 B 1 1217 1217 N44 N44 . Q 7 HOH A 1 2001 2001 HOH HOH . Q 7 HOH A 2 2002 2002 HOH HOH . Q 7 HOH A 3 2003 2003 HOH HOH . Q 7 HOH A 4 2004 2004 HOH HOH . Q 7 HOH A 5 2005 2005 HOH HOH . Q 7 HOH A 6 2006 2006 HOH HOH . Q 7 HOH A 7 2007 2007 HOH HOH . Q 7 HOH A 8 2008 2008 HOH HOH . Q 7 HOH A 9 2009 2009 HOH HOH . Q 7 HOH A 10 2010 2010 HOH HOH . Q 7 HOH A 11 2011 2011 HOH HOH . Q 7 HOH A 12 2012 2012 HOH HOH . Q 7 HOH A 13 2013 2013 HOH HOH . Q 7 HOH A 14 2014 2014 HOH HOH . Q 7 HOH A 15 2015 2015 HOH HOH . Q 7 HOH A 16 2016 2016 HOH HOH . Q 7 HOH A 17 2017 2017 HOH HOH . Q 7 HOH A 18 2018 2018 HOH HOH . Q 7 HOH A 19 2019 2019 HOH HOH . Q 7 HOH A 20 2020 2020 HOH HOH . Q 7 HOH A 21 2021 2021 HOH HOH . Q 7 HOH A 22 2022 2022 HOH HOH . Q 7 HOH A 23 2023 2023 HOH HOH . Q 7 HOH A 24 2024 2024 HOH HOH . Q 7 HOH A 25 2025 2025 HOH HOH . Q 7 HOH A 26 2026 2026 HOH HOH . Q 7 HOH A 27 2027 2027 HOH HOH . Q 7 HOH A 28 2028 2028 HOH HOH . Q 7 HOH A 29 2029 2029 HOH HOH . Q 7 HOH A 30 2030 2030 HOH HOH . Q 7 HOH A 31 2031 2031 HOH HOH . Q 7 HOH A 32 2032 2032 HOH HOH . Q 7 HOH A 33 2033 2033 HOH HOH . Q 7 HOH A 34 2034 2034 HOH HOH . Q 7 HOH A 35 2035 2035 HOH HOH . Q 7 HOH A 36 2036 2036 HOH HOH . Q 7 HOH A 37 2037 2037 HOH HOH . Q 7 HOH A 38 2038 2038 HOH HOH . Q 7 HOH A 39 2039 2039 HOH HOH . Q 7 HOH A 40 2040 2040 HOH HOH . Q 7 HOH A 41 2041 2041 HOH HOH . Q 7 HOH A 42 2042 2042 HOH HOH . Q 7 HOH A 43 2043 2043 HOH HOH . Q 7 HOH A 44 2044 2044 HOH HOH . Q 7 HOH A 45 2045 2045 HOH HOH . Q 7 HOH A 46 2046 2046 HOH HOH . Q 7 HOH A 47 2047 2047 HOH HOH . Q 7 HOH A 48 2048 2048 HOH HOH . Q 7 HOH A 49 2049 2049 HOH HOH . Q 7 HOH A 50 2050 2050 HOH HOH . Q 7 HOH A 51 2051 2051 HOH HOH . Q 7 HOH A 52 2052 2052 HOH HOH . Q 7 HOH A 53 2053 2053 HOH HOH . Q 7 HOH A 54 2054 2054 HOH HOH . Q 7 HOH A 55 2055 2055 HOH HOH . Q 7 HOH A 56 2056 2056 HOH HOH . Q 7 HOH A 57 2057 2057 HOH HOH . Q 7 HOH A 58 2058 2058 HOH HOH . Q 7 HOH A 59 2059 2059 HOH HOH . Q 7 HOH A 60 2060 2060 HOH HOH . Q 7 HOH A 61 2061 2061 HOH HOH . Q 7 HOH A 62 2062 2062 HOH HOH . Q 7 HOH A 63 2063 2063 HOH HOH . Q 7 HOH A 64 2064 2064 HOH HOH . Q 7 HOH A 65 2065 2065 HOH HOH . Q 7 HOH A 66 2066 2066 HOH HOH . Q 7 HOH A 67 2067 2067 HOH HOH . Q 7 HOH A 68 2068 2068 HOH HOH . Q 7 HOH A 69 2069 2069 HOH HOH . Q 7 HOH A 70 2070 2070 HOH HOH . Q 7 HOH A 71 2071 2071 HOH HOH . Q 7 HOH A 72 2072 2072 HOH HOH . Q 7 HOH A 73 2073 2073 HOH HOH . Q 7 HOH A 74 2074 2074 HOH HOH . R 7 HOH B 1 2001 2001 HOH HOH . R 7 HOH B 2 2002 2002 HOH HOH . R 7 HOH B 3 2003 2003 HOH HOH . R 7 HOH B 4 2004 2004 HOH HOH . R 7 HOH B 5 2005 2005 HOH HOH . R 7 HOH B 6 2006 2006 HOH HOH . R 7 HOH B 7 2007 2007 HOH HOH . R 7 HOH B 8 2008 2008 HOH HOH . R 7 HOH B 9 2009 2009 HOH HOH . R 7 HOH B 10 2010 2010 HOH HOH . R 7 HOH B 11 2011 2011 HOH HOH . R 7 HOH B 12 2012 2012 HOH HOH . R 7 HOH B 13 2013 2013 HOH HOH . R 7 HOH B 14 2014 2014 HOH HOH . R 7 HOH B 15 2015 2015 HOH HOH . R 7 HOH B 16 2016 2016 HOH HOH . R 7 HOH B 17 2017 2017 HOH HOH . R 7 HOH B 18 2018 2018 HOH HOH . R 7 HOH B 19 2019 2019 HOH HOH . R 7 HOH B 20 2020 2020 HOH HOH . R 7 HOH B 21 2021 2021 HOH HOH . R 7 HOH B 22 2022 2022 HOH HOH . R 7 HOH B 23 2023 2023 HOH HOH . R 7 HOH B 24 2024 2024 HOH HOH . R 7 HOH B 25 2025 2025 HOH HOH . R 7 HOH B 26 2026 2026 HOH HOH . R 7 HOH B 27 2027 2027 HOH HOH . R 7 HOH B 28 2028 2028 HOH HOH . R 7 HOH B 29 2029 2029 HOH HOH . R 7 HOH B 30 2030 2030 HOH HOH . R 7 HOH B 31 2031 2031 HOH HOH . R 7 HOH B 32 2032 2032 HOH HOH . R 7 HOH B 33 2033 2033 HOH HOH . R 7 HOH B 34 2034 2034 HOH HOH . R 7 HOH B 35 2035 2035 HOH HOH . R 7 HOH B 36 2036 2036 HOH HOH . R 7 HOH B 37 2037 2037 HOH HOH . R 7 HOH B 38 2038 2038 HOH HOH . R 7 HOH B 39 2039 2039 HOH HOH . R 7 HOH B 40 2040 2040 HOH HOH . R 7 HOH B 41 2041 2041 HOH HOH . R 7 HOH B 42 2042 2042 HOH HOH . R 7 HOH B 43 2043 2043 HOH HOH . R 7 HOH B 44 2044 2044 HOH HOH . R 7 HOH B 45 2045 2045 HOH HOH . R 7 HOH B 46 2046 2046 HOH HOH . R 7 HOH B 47 2047 2047 HOH HOH . R 7 HOH B 48 2048 2048 HOH HOH . R 7 HOH B 49 2049 2049 HOH HOH . R 7 HOH B 50 2050 2050 HOH HOH . R 7 HOH B 51 2051 2051 HOH HOH . R 7 HOH B 52 2052 2052 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 N44 . . . H 5 -8.699 42.19 -0.216 0.9 31.98 ? C1 N44 1215 A 1 HETATM 2 C C2 N44 . . . H 5 -10.561 48.006 5.946 0.9 28.96 ? C2 N44 1215 A 1 HETATM 3 C C3 N44 . . . H 5 -8.366 41.688 1.024 0.9 32.2 ? C3 N44 1215 A 1 HETATM 4 C C4 N44 . . . H 5 -8.479 43.521 -0.493 0.9 32.79 ? C4 N44 1215 A 1 HETATM 5 C C5 N44 . . . H 5 -11.443 48.843 5.308 0.9 29.06 ? C5 N44 1215 A 1 HETATM 6 C C6 N44 . . . H 5 -9.569 47.355 5.237 0.9 29.75 ? C6 N44 1215 A 1 HETATM 7 C C7 N44 . . . H 5 -7.831 42.517 1.982 0.9 31.42 ? C7 N44 1215 A 1 HETATM 8 C C8 N44 . . . H 5 -7.95 44.351 0.473 0.9 32.66 ? C8 N44 1215 A 1 HETATM 9 C C9 N44 . . . H 5 -11.316 49.026 3.942 0.9 30.09 ? C9 N44 1215 A 1 HETATM 10 C C10 N44 . . . H 5 -11.415 45.41 -1.435 0.9 25.46 ? C10 N44 1215 A 1 HETATM 11 C C11 N44 . . . H 5 -12.224 44.844 -2.412 0.9 23.31 ? C11 N44 1215 A 1 HETATM 12 C C12 N44 . . . H 5 -9.442 47.532 3.87 0.9 31.03 ? C12 N44 1215 A 1 HETATM 13 C C13 N44 . . . H 5 -13.284 45.628 0.109 0.9 22.22 ? C13 N44 1215 A 1 HETATM 14 C C14 N44 . . . H 5 -7.625 43.854 1.721 0.9 32.88 ? C14 N44 1215 A 1 HETATM 15 C C15 N44 . . . H 5 -10.328 48.382 3.222 0.9 30.24 ? C15 N44 1215 A 1 HETATM 16 C C16 N44 . . . H 5 -11.93 45.792 -0.196 0.9 26.97 ? C16 N44 1215 A 1 HETATM 17 C C17 N44 . . . H 5 -13.554 44.685 -2.097 0.9 22.2 ? C17 N44 1215 A 1 HETATM 18 C C18 N44 . . . H 5 -14.072 45.058 -0.882 0.9 22.68 ? C18 N44 1215 A 1 HETATM 19 C C19 N44 . . . H 5 -9.775 49.815 -1.544 0.9 35.02 ? C19 N44 1215 A 1 HETATM 20 C C20 N44 . . . H 5 -10.442 48.677 -1.317 0.9 32.56 ? C20 N44 1215 A 1 HETATM 21 C C21 N44 . . . H 5 -8.353 46.817 3.14 0.9 31.38 ? C21 N44 1215 A 1 HETATM 22 C C22 N44 . . . H 5 -13.863 46.014 1.447 0.9 21.78 ? C22 N44 1215 A 1 HETATM 23 C C23 N44 . . . H 5 -15.678 44.229 -2.11 0.9 22.9 ? C23 N44 1215 A 1 HETATM 24 C C24 N44 . . . H 5 -7.061 44.755 2.774 0.9 30.83 ? C24 N44 1215 A 1 HETATM 25 C C25 N44 . . . H 5 -10.26 48.639 1.757 0.9 30.55 ? C25 N44 1215 A 1 HETATM 26 C C26 N44 . . . H 5 -10.979 46.401 0.795 0.9 27.3 ? C26 N44 1215 A 1 HETATM 27 C C27 N44 . . . H 5 -11.565 48.604 -0.34 0.9 30.72 ? C27 N44 1215 A 1 HETATM 28 N N28 N44 . . . H 5 -8.114 45.485 3.45 0.9 32.09 ? N28 N44 1215 A 1 HETATM 29 N N29 N44 . . . H 5 -11.236 47.879 0.933 0.9 31.49 ? N29 N44 1215 A 1 HETATM 30 O O30 N44 . . . H 5 -14.825 45.312 1.866 0.9 15.13 ? O30 N44 1215 A 1 HETATM 31 O O31 N44 . . . H 5 -7.701 47.422 2.303 0.9 31.62 ? O31 N44 1215 A 1 HETATM 32 O O32 N44 . . . H 5 -13.362 46.969 2.113 0.9 21.41 ? O32 N44 1215 A 1 HETATM 33 O O33 N44 . . . H 5 -14.497 44.151 -2.94 0.9 23.14 ? O33 N44 1215 A 1 HETATM 34 O O34 N44 . . . H 5 -15.442 44.802 -0.811 0.9 22.93 ? O34 N44 1215 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #