data_3ZSY # _model_server_result.job_id I2CVX3IBW2WOB5Nw0qY3gw _model_server_result.datetime_utc '2024-11-08 07:07:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zsy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1214}' # _entry.id 3ZSY # _exptl.entry_id 3ZSY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 439.524 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (R)-(4-CARBOXY-1,3-BENZODIOXOL-5-YL)METHYL-[[2-(CYCLOHEXYLMETHYLCARBAMOYL)PHENYL]METHYL]-METHYL-AZANIUM _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ZSY _cell.length_a 70.692 _cell.length_b 70.692 _cell.length_c 66.889 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZSY _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 L N N # _chem_comp.formula 'C25 H31 N2 O5 1' _chem_comp.formula_weight 439.524 _chem_comp.id OM3 _chem_comp.mon_nstd_flag . _chem_comp.name (R)-(4-CARBOXY-1,3-BENZODIOXOL-5-YL)METHYL-[[2-(CYCLOHEXYLMETHYLCARBAMOYL)PHENYL]METHYL]-METHYL-AZANIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OM3 sing 243 n y C1 C3 OM3 doub 244 n y C2 C4 OM3 doub 245 n y C3 C7 OM3 sing 246 n y C4 C9 OM3 sing 247 n y C5 C6 OM3 sing 248 n y C5 C10 OM3 doub 249 n y C6 C11 OM3 doub 250 n y C7 C9 OM3 doub 251 n y C7 C13 OM3 sing 252 n n C8 C10 OM3 sing 253 n y C8 C12 OM3 doub 254 n y C8 C14 OM3 sing 255 n n C9 C23 OM3 sing 256 n n C10 C24 OM3 sing 257 n n C11 C12 OM3 sing 258 n y C11 O31 OM3 sing 259 n n C12 O32 OM3 sing 260 n n C13 N26 OM3 sing 261 n n C13 O29 OM3 doub 262 n n C14 O28 OM3 sing 263 n n C14 O30 OM3 doub 264 n n C15 C16 OM3 sing 265 n n C15 C17 OM3 sing 266 n n C16 C18 OM3 sing 267 n n C17 C19 OM3 sing 268 n n C18 C21 OM3 sing 269 n n C19 C21 OM3 sing 270 n n C20 O31 OM3 sing 271 n n C20 O32 OM3 sing 272 n n C21 C25 OM3 sing 273 n n C22 N27 OM3 sing 274 n n C23 N27 OM3 sing 275 n n C24 N27 OM3 sing 276 n n C25 N26 OM3 sing 277 n n C1 H1 OM3 sing 278 n n C2 H2 OM3 sing 279 n n C3 H3 OM3 sing 280 n n C4 H4 OM3 sing 281 n n C5 H5 OM3 sing 282 n n C6 H6 OM3 sing 283 n n C23 H231 OM3 sing 284 n n C23 H232 OM3 sing 285 n n C24 H241 OM3 sing 286 n n C24 H242 OM3 sing 287 n n N26 H26 OM3 sing 288 n n O28 H28 OM3 sing 289 n n C15 H151 OM3 sing 290 n n C15 H152 OM3 sing 291 n n C16 H161 OM3 sing 292 n n C16 H162 OM3 sing 293 n n C17 H171 OM3 sing 294 n n C17 H172 OM3 sing 295 n n C18 H181 OM3 sing 296 n n C18 H182 OM3 sing 297 n n C19 H191 OM3 sing 298 n n C19 H192 OM3 sing 299 n n C21 H21 OM3 sing 300 n n C20 H201 OM3 sing 301 n n C20 H202 OM3 sing 302 n n C25 H251 OM3 sing 303 n n C25 H252 OM3 sing 304 n n C22 H221 OM3 sing 305 n n C22 H222 OM3 sing 306 n n C22 H223 OM3 sing 307 n n N27 H227 OM3 sing 308 n n # _atom_sites.entry_id 3ZSY _atom_sites.fract_transf_matrix[1][1] 0.014146 _atom_sites.fract_transf_matrix[1][2] 0.008167 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01495 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1210 1210 SO4 SO4 . D 2 SO4 A 1 1211 1211 SO4 SO4 . E 2 SO4 A 1 1212 1212 SO4 SO4 . F 3 ACT A 1 1213 1213 ACT ACT . G 4 OM3 A 1 1214 1214 OM3 OM3 . H 2 SO4 B 1 1210 1210 SO4 SO4 . I 2 SO4 B 1 1211 1211 SO4 SO4 . J 2 SO4 B 1 1212 1212 SO4 SO4 . K 3 ACT B 1 1213 1213 ACT ACT . L 4 OM3 B 1 1214 1214 OM3 OM3 . M 5 HOH A 1 2001 2001 HOH HOH . M 5 HOH A 2 2002 2002 HOH HOH . M 5 HOH A 3 2003 2003 HOH HOH . M 5 HOH A 4 2004 2004 HOH HOH . M 5 HOH A 5 2005 2005 HOH HOH . M 5 HOH A 6 2006 2006 HOH HOH . M 5 HOH A 7 2007 2007 HOH HOH . M 5 HOH A 8 2008 2008 HOH HOH . M 5 HOH A 9 2009 2009 HOH HOH . M 5 HOH A 10 2010 2010 HOH HOH . M 5 HOH A 11 2011 2011 HOH HOH . M 5 HOH A 12 2012 2012 HOH HOH . M 5 HOH A 13 2013 2013 HOH HOH . M 5 HOH A 14 2014 2014 HOH HOH . M 5 HOH A 15 2015 2015 HOH HOH . M 5 HOH A 16 2016 2016 HOH HOH . M 5 HOH A 17 2017 2017 HOH HOH . M 5 HOH A 18 2018 2018 HOH HOH . M 5 HOH A 19 2019 2019 HOH HOH . M 5 HOH A 20 2020 2020 HOH HOH . M 5 HOH A 21 2021 2021 HOH HOH . M 5 HOH A 22 2022 2022 HOH HOH . M 5 HOH A 23 2023 2023 HOH HOH . M 5 HOH A 24 2024 2024 HOH HOH . M 5 HOH A 25 2025 2025 HOH HOH . M 5 HOH A 26 2026 2026 HOH HOH . M 5 HOH A 27 2027 2027 HOH HOH . M 5 HOH A 28 2028 2028 HOH HOH . M 5 HOH A 29 2029 2029 HOH HOH . M 5 HOH A 30 2030 2030 HOH HOH . M 5 HOH A 31 2031 2031 HOH HOH . M 5 HOH A 32 2032 2032 HOH HOH . M 5 HOH A 33 2033 2033 HOH HOH . M 5 HOH A 34 2034 2034 HOH HOH . M 5 HOH A 35 2035 2035 HOH HOH . M 5 HOH A 36 2036 2036 HOH HOH . M 5 HOH A 37 2037 2037 HOH HOH . N 5 HOH B 1 2001 2001 HOH HOH . N 5 HOH B 2 2002 2002 HOH HOH . N 5 HOH B 3 2003 2003 HOH HOH . N 5 HOH B 4 2004 2004 HOH HOH . N 5 HOH B 5 2005 2005 HOH HOH . N 5 HOH B 6 2006 2006 HOH HOH . N 5 HOH B 7 2007 2007 HOH HOH . N 5 HOH B 8 2008 2008 HOH HOH . N 5 HOH B 9 2009 2009 HOH HOH . N 5 HOH B 10 2010 2010 HOH HOH . N 5 HOH B 11 2011 2011 HOH HOH . N 5 HOH B 12 2012 2012 HOH HOH . N 5 HOH B 13 2013 2013 HOH HOH . N 5 HOH B 14 2014 2014 HOH HOH . N 5 HOH B 15 2015 2015 HOH HOH . N 5 HOH B 16 2016 2016 HOH HOH . N 5 HOH B 17 2017 2017 HOH HOH . N 5 HOH B 18 2018 2018 HOH HOH . N 5 HOH B 19 2019 2019 HOH HOH . N 5 HOH B 20 2020 2020 HOH HOH . N 5 HOH B 21 2021 2021 HOH HOH . N 5 HOH B 22 2022 2022 HOH HOH . N 5 HOH B 23 2023 2023 HOH HOH . N 5 HOH B 24 2024 2024 HOH HOH . N 5 HOH B 25 2025 2025 HOH HOH . N 5 HOH B 26 2026 2026 HOH HOH . N 5 HOH B 27 2027 2027 HOH HOH . N 5 HOH B 28 2028 2028 HOH HOH . N 5 HOH B 29 2029 2029 HOH HOH . N 5 HOH B 30 2030 2030 HOH HOH . N 5 HOH B 31 2031 2031 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OM3 . . . G 4 -10.762 47.974 5.996 1 21.21 ? C1 OM3 1214 A 1 HETATM 2 C C2 OM3 . . . G 4 -11.604 48.867 5.39 1 20.77 ? C2 OM3 1214 A 1 HETATM 3 C C3 OM3 . . . G 4 -9.812 47.336 5.218 1 25.37 ? C3 OM3 1214 A 1 HETATM 4 C C4 OM3 . . . G 4 -11.494 49.092 4.032 1 21.2 ? C4 OM3 1214 A 1 HETATM 5 C C5 OM3 . . . G 4 -11.571 45.556 -1.477 1 22.14 ? C5 OM3 1214 A 1 HETATM 6 C C6 OM3 . . . G 4 -12.342 44.912 -2.43 1 21.03 ? C6 OM3 1214 A 1 HETATM 7 C C7 OM3 . . . G 4 -9.687 47.565 3.857 1 24.73 ? C7 OM3 1214 A 1 HETATM 8 C C8 OM3 . . . G 4 -13.409 45.603 0.084 1 19.47 ? C8 OM3 1214 A 1 HETATM 9 C C9 OM3 . . . G 4 -10.551 48.465 3.252 1 23.36 ? C9 OM3 1214 A 1 HETATM 10 C C10 OM3 . . . G 4 -12.079 45.897 -0.231 1 22.39 ? C10 OM3 1214 A 1 HETATM 11 C C11 OM3 . . . G 4 -13.65 44.631 -2.11 1 19.34 ? C11 OM3 1214 A 1 HETATM 12 C C12 OM3 . . . G 4 -14.169 44.964 -0.895 1 19.08 ? C12 OM3 1214 A 1 HETATM 13 C C13 OM3 . . . G 4 -8.624 46.824 3.099 1 27.6 ? C13 OM3 1214 A 1 HETATM 14 C C14 OM3 . . . G 4 -14.014 45.913 1.415 1 18.77 ? C14 OM3 1214 A 1 HETATM 15 C C15 OM3 . . . G 4 -8.712 41.79 -0.229 1 32.51 ? C15 OM3 1214 A 1 HETATM 16 C C16 OM3 . . . G 4 -9.687 42.799 0.309 1 34.06 ? C16 OM3 1214 A 1 HETATM 17 C C17 OM3 . . . G 4 -7.907 41.313 0.954 1 34.07 ? C17 OM3 1214 A 1 HETATM 18 C C18 OM3 . . . G 4 -8.918 43.991 0.843 1 33.5 ? C18 OM3 1214 A 1 HETATM 19 C C19 OM3 . . . G 4 -7.136 42.474 1.564 1 32.6 ? C19 OM3 1214 A 1 HETATM 20 C C20 OM3 . . . G 4 -15.7 43.959 -2.082 1 17.82 ? C20 OM3 1214 A 1 HETATM 21 C C21 OM3 . . . G 4 -8.102 43.538 2.03 1 33.87 ? C21 OM3 1214 A 1 HETATM 22 C C22 OM3 . . . G 4 -11.66 48.78 -0.375 1 22.62 ? C22 OM3 1214 A 1 HETATM 23 C C23 OM3 . . . G 4 -10.515 48.804 1.795 1 23.9 ? C23 OM3 1214 A 1 HETATM 24 C C24 OM3 . . . G 4 -11.13 46.588 0.72 1 24.6 ? C24 OM3 1214 A 1 HETATM 25 C C25 OM3 . . . G 4 -7.444 44.724 2.734 1 32 ? C25 OM3 1214 A 1 HETATM 26 N N26 OM3 . . . G 4 -8.491 45.495 3.379 1 29.96 ? N26 OM3 1214 A 1 HETATM 27 N N27 OM3 . . . G 4 -11.453 48.053 0.91 1 26.2 ? N27 OM3 1214 A 1 HETATM 28 O O28 OM3 . . . G 4 -14.965 45.173 1.812 1 17.46 ? O28 OM3 1214 A 1 HETATM 29 O O29 OM3 . . . G 4 -7.911 47.354 2.267 1 27.01 ? O29 OM3 1214 A 1 HETATM 30 O O30 OM3 . . . G 4 -13.522 46.835 2.11 1 19.89 ? O30 OM3 1214 A 1 HETATM 31 O O31 OM3 . . . G 4 -14.553 44.02 -2.932 1 19.52 ? O31 OM3 1214 A 1 HETATM 32 O O32 OM3 . . . G 4 -15.497 44.585 -0.81 1 20.48 ? O32 OM3 1214 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #