data_3ZT0 # _model_server_result.job_id d1NY7wxVDupd4Uh5zqzxIQ _model_server_result.datetime_utc '2024-11-25 14:05:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zt0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1213}' # _entry.id 3ZT0 # _exptl.entry_id 3ZT0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 463.502 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4-CARBOXY-1,3-BENZODIOXOL-5-YL)-N-{2-[(4-METHOXYBENZYL)CARBAMOYL]BENZYL}-N-METHYLMETHANAMINIUM _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ZT0 _cell.length_a 71.355 _cell.length_b 71.355 _cell.length_c 67.08 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZT0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 J N N # _chem_comp.formula 'C26 H27 N2 O6 1' _chem_comp.formula_weight 463.502 _chem_comp.id ZT0 _chem_comp.mon_nstd_flag . _chem_comp.name (4-CARBOXY-1,3-BENZODIOXOL-5-YL)-N-{2-[(4-METHOXYBENZYL)CARBAMOYL]BENZYL}-N-METHYLMETHANAMINIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ZT0 sing 380 n y C1 C3 ZT0 doub 381 n y C2 C4 ZT0 doub 382 n y C3 C11 ZT0 sing 383 n y C4 C14 ZT0 sing 384 n y C5 C8 ZT0 sing 385 n y C5 C15 ZT0 doub 386 n y C6 C9 ZT0 sing 387 n y C6 C13 ZT0 doub 388 n y C7 C10 ZT0 doub 389 n y C7 C13 ZT0 sing 390 n y C8 C16 ZT0 doub 391 n y C9 C18 ZT0 doub 392 n y C10 C18 ZT0 sing 393 n y C11 C14 ZT0 doub 394 n y C11 C19 ZT0 sing 395 n n C12 C15 ZT0 sing 396 n y C12 C17 ZT0 doub 397 n y C12 C20 ZT0 sing 398 n n C13 C24 ZT0 sing 399 n n C14 C25 ZT0 sing 400 n n C15 C26 ZT0 sing 401 n n C16 C17 ZT0 sing 402 n y C16 O32 ZT0 sing 403 n n C17 O33 ZT0 sing 404 n n C18 O34 ZT0 sing 405 n n C19 N27 ZT0 sing 406 n n C19 O30 ZT0 doub 407 n n C20 O29 ZT0 sing 408 n n C20 O31 ZT0 doub 409 n n C21 O32 ZT0 sing 410 n n C21 O33 ZT0 sing 411 n n C22 N28 ZT0 sing 412 n n C23 O34 ZT0 sing 413 n n C24 N27 ZT0 sing 414 n n C25 N28 ZT0 sing 415 n n C26 N28 ZT0 sing 416 n n C1 H1 ZT0 sing 417 n n C2 H2 ZT0 sing 418 n n C3 H3 ZT0 sing 419 n n C4 H4 ZT0 sing 420 n n C5 H5 ZT0 sing 421 n n C8 H8 ZT0 sing 422 n n C6 H6 ZT0 sing 423 n n C9 H9 ZT0 sing 424 n n C7 H7 ZT0 sing 425 n n C10 H10 ZT0 sing 426 n n C24 H241 ZT0 sing 427 n n C24 H242 ZT0 sing 428 n n C25 H251 ZT0 sing 429 n n C25 H252 ZT0 sing 430 n n C26 H261 ZT0 sing 431 n n C26 H262 ZT0 sing 432 n n N27 H27 ZT0 sing 433 n n O29 H29 ZT0 sing 434 n n C21 H211 ZT0 sing 435 n n C21 H212 ZT0 sing 436 n n C22 H221 ZT0 sing 437 n n C22 H222 ZT0 sing 438 n n C22 H223 ZT0 sing 439 n n C23 H231 ZT0 sing 440 n n C23 H232 ZT0 sing 441 n n C23 H233 ZT0 sing 442 n n N28 H28 ZT0 sing 443 n n # _atom_sites.entry_id 3ZT0 _atom_sites.fract_transf_matrix[1][1] 0.014014 _atom_sites.fract_transf_matrix[1][2] 0.008091 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014908 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1210 1210 SO4 SO4 . D 2 SO4 A 1 1211 1211 SO4 SO4 . E 2 SO4 A 1 1212 1212 SO4 SO4 . F 3 ZT0 A 1 1213 1213 ZT0 ZT0 . G 2 SO4 B 1 1210 1210 SO4 SO4 . H 2 SO4 B 1 1211 1211 SO4 SO4 . I 2 SO4 B 1 1212 1212 SO4 SO4 . J 3 ZT0 B 1 1213 1213 ZT0 ZT0 . K 4 HOH A 1 2001 2001 HOH HOH . K 4 HOH A 2 2002 2002 HOH HOH . K 4 HOH A 3 2003 2003 HOH HOH . K 4 HOH A 4 2004 2004 HOH HOH . K 4 HOH A 5 2005 2005 HOH HOH . K 4 HOH A 6 2006 2006 HOH HOH . K 4 HOH A 7 2007 2007 HOH HOH . K 4 HOH A 8 2008 2008 HOH HOH . K 4 HOH A 9 2009 2009 HOH HOH . K 4 HOH A 10 2010 2010 HOH HOH . K 4 HOH A 11 2011 2011 HOH HOH . K 4 HOH A 12 2012 2012 HOH HOH . K 4 HOH A 13 2013 2013 HOH HOH . K 4 HOH A 14 2014 2014 HOH HOH . K 4 HOH A 15 2015 2015 HOH HOH . K 4 HOH A 16 2016 2016 HOH HOH . K 4 HOH A 17 2017 2017 HOH HOH . K 4 HOH A 18 2018 2018 HOH HOH . K 4 HOH A 19 2019 2019 HOH HOH . K 4 HOH A 20 2020 2020 HOH HOH . K 4 HOH A 21 2021 2021 HOH HOH . K 4 HOH A 22 2022 2022 HOH HOH . K 4 HOH A 23 2023 2023 HOH HOH . K 4 HOH A 24 2024 2024 HOH HOH . K 4 HOH A 25 2025 2025 HOH HOH . K 4 HOH A 26 2026 2026 HOH HOH . K 4 HOH A 27 2027 2027 HOH HOH . K 4 HOH A 28 2028 2028 HOH HOH . K 4 HOH A 29 2029 2029 HOH HOH . K 4 HOH A 30 2030 2030 HOH HOH . K 4 HOH A 31 2031 2031 HOH HOH . K 4 HOH A 32 2032 2032 HOH HOH . K 4 HOH A 33 2033 2033 HOH HOH . K 4 HOH A 34 2034 2034 HOH HOH . K 4 HOH A 35 2035 2035 HOH HOH . K 4 HOH A 36 2036 2036 HOH HOH . K 4 HOH A 37 2037 2037 HOH HOH . K 4 HOH A 38 2038 2038 HOH HOH . K 4 HOH A 39 2039 2039 HOH HOH . K 4 HOH A 40 2040 2040 HOH HOH . K 4 HOH A 41 2041 2041 HOH HOH . K 4 HOH A 42 2042 2042 HOH HOH . K 4 HOH A 43 2043 2043 HOH HOH . K 4 HOH A 44 2044 2044 HOH HOH . K 4 HOH A 45 2045 2045 HOH HOH . K 4 HOH A 46 2046 2046 HOH HOH . K 4 HOH A 47 2047 2047 HOH HOH . K 4 HOH A 48 2048 2048 HOH HOH . K 4 HOH A 49 2049 2049 HOH HOH . K 4 HOH A 50 2050 2050 HOH HOH . K 4 HOH A 51 2051 2051 HOH HOH . K 4 HOH A 52 2052 2052 HOH HOH . K 4 HOH A 53 2053 2053 HOH HOH . K 4 HOH A 54 2054 2054 HOH HOH . K 4 HOH A 55 2055 2055 HOH HOH . K 4 HOH A 56 2056 2056 HOH HOH . K 4 HOH A 57 2057 2057 HOH HOH . K 4 HOH A 58 2058 2058 HOH HOH . L 4 HOH B 1 2001 2001 HOH HOH . L 4 HOH B 2 2002 2002 HOH HOH . L 4 HOH B 3 2003 2003 HOH HOH . L 4 HOH B 4 2004 2004 HOH HOH . L 4 HOH B 5 2005 2005 HOH HOH . L 4 HOH B 6 2006 2006 HOH HOH . L 4 HOH B 7 2007 2007 HOH HOH . L 4 HOH B 8 2008 2008 HOH HOH . L 4 HOH B 9 2009 2009 HOH HOH . L 4 HOH B 10 2010 2010 HOH HOH . L 4 HOH B 11 2011 2011 HOH HOH . L 4 HOH B 12 2012 2012 HOH HOH . L 4 HOH B 13 2013 2013 HOH HOH . L 4 HOH B 14 2014 2014 HOH HOH . L 4 HOH B 15 2015 2015 HOH HOH . L 4 HOH B 16 2016 2016 HOH HOH . L 4 HOH B 17 2017 2017 HOH HOH . L 4 HOH B 18 2018 2018 HOH HOH . L 4 HOH B 19 2019 2019 HOH HOH . L 4 HOH B 20 2020 2020 HOH HOH . L 4 HOH B 21 2021 2021 HOH HOH . L 4 HOH B 22 2022 2022 HOH HOH . L 4 HOH B 23 2023 2023 HOH HOH . L 4 HOH B 24 2024 2024 HOH HOH . L 4 HOH B 25 2025 2025 HOH HOH . L 4 HOH B 26 2026 2026 HOH HOH . L 4 HOH B 27 2027 2027 HOH HOH . L 4 HOH B 28 2028 2028 HOH HOH . L 4 HOH B 29 2029 2029 HOH HOH . L 4 HOH B 30 2030 2030 HOH HOH . L 4 HOH B 31 2031 2031 HOH HOH . L 4 HOH B 32 2032 2032 HOH HOH . L 4 HOH B 33 2033 2033 HOH HOH . L 4 HOH B 34 2034 2034 HOH HOH . L 4 HOH B 35 2035 2035 HOH HOH . L 4 HOH B 36 2036 2036 HOH HOH . L 4 HOH B 37 2037 2037 HOH HOH . L 4 HOH B 38 2038 2038 HOH HOH . L 4 HOH B 39 2039 2039 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ZT0 . . . F 3 11.119 7.523 -5.961 1 27.32 ? C1 ZT0 1213 A 1 HETATM 2 C C2 ZT0 . . . F 3 12.115 8.232 -5.324 1 28.56 ? C2 ZT0 1213 A 1 HETATM 3 C C3 ZT0 . . . F 3 10.05 7.069 -5.222 1 30.55 ? C3 ZT0 1213 A 1 HETATM 4 C C4 ZT0 . . . F 3 12.071 8.495 -3.968 1 27.94 ? C4 ZT0 1213 A 1 HETATM 5 C C5 ZT0 . . . F 3 11.46 4.771 1.348 1 26.42 ? C5 ZT0 1213 A 1 HETATM 6 C C6 ZT0 . . . F 3 7.512 3.989 -0.511 1 24.23 ? C6 ZT0 1213 A 1 HETATM 7 C C7 ZT0 . . . F 3 9.333 3.145 -1.799 1 27.91 ? C7 ZT0 1213 A 1 HETATM 8 C C8 ZT0 . . . F 3 12.16 4.087 2.349 1 20.95 ? C8 ZT0 1213 A 1 HETATM 9 C C9 ZT0 . . . F 3 7.919 3.239 0.561 1 23.41 ? C9 ZT0 1213 A 1 HETATM 10 C C10 ZT0 . . . F 3 9.755 2.376 -0.723 1 26.48 ? C10 ZT0 1213 A 1 HETATM 11 C C11 ZT0 . . . F 3 10.018 7.338 -3.863 1 29.16 ? C11 ZT0 1213 A 1 HETATM 12 C C12 ZT0 . . . F 3 13.424 4.863 -0.082 1 24.09 ? C12 ZT0 1213 A 1 HETATM 13 C C13 ZT0 . . . F 3 8.207 3.953 -1.69 1 24.95 ? C13 ZT0 1213 A 1 HETATM 14 C C14 ZT0 . . . F 3 11.01 8.043 -3.218 1 27.54 ? C14 ZT0 1213 A 1 HETATM 15 C C15 ZT0 . . . F 3 12.079 5.142 0.147 1 25.59 ? C15 ZT0 1213 A 1 HETATM 16 C C16 ZT0 . . . F 3 13.48 3.812 2.1 1 19.95 ? C16 ZT0 1213 A 1 HETATM 17 C C17 ZT0 . . . F 3 14.097 4.182 0.935 1 23.46 ? C17 ZT0 1213 A 1 HETATM 18 C C18 ZT0 . . . F 3 9.02 2.436 0.465 1 26.96 ? C18 ZT0 1213 A 1 HETATM 19 C C19 ZT0 . . . F 3 8.849 6.809 -3.134 1 30.76 ? C19 ZT0 1213 A 1 HETATM 20 C C20 ZT0 . . . F 3 14.099 5.254 -1.396 1 25.13 ? C20 ZT0 1213 A 1 HETATM 21 C C21 ZT0 . . . F 3 15.529 3.1 2.202 1 20.26 ? C21 ZT0 1213 A 1 HETATM 22 C C22 ZT0 . . . F 3 11.53 7.82 0.593 1 23.5 ? C22 ZT0 1213 A 1 HETATM 23 C C23 ZT0 . . . F 3 10.608 1.131 1.514 1 27.41 ? C23 ZT0 1213 A 1 HETATM 24 C C24 ZT0 . . . F 3 7.644 4.804 -2.782 1 25.61 ? C24 ZT0 1213 A 1 HETATM 25 C C25 ZT0 . . . F 3 11.004 8.346 -1.744 1 27.57 ? C25 ZT0 1213 A 1 HETATM 26 C C26 ZT0 . . . F 3 11.283 5.882 -0.91 1 24.83 ? C26 ZT0 1213 A 1 HETATM 27 N N27 ZT0 . . . F 3 8.607 5.533 -3.511 1 24.73 ? N27 ZT0 1213 A 1 HETATM 28 N N28 ZT0 . . . F 3 11.651 7.34 -0.81 1 24.53 ? N28 ZT0 1213 A 1 HETATM 29 O O29 ZT0 . . . F 3 15.038 4.487 -1.761 1 18.93 ? O29 ZT0 1213 A 1 HETATM 30 O O30 ZT0 . . . F 3 8.211 7.449 -2.306 1 32.09 ? O30 ZT0 1213 A 1 HETATM 31 O O31 ZT0 . . . F 3 13.688 6.249 -2.081 1 23.35 ? O31 ZT0 1213 A 1 HETATM 32 O O32 ZT0 . . . F 3 14.329 3.196 2.963 1 21.15 ? O32 ZT0 1213 A 1 HETATM 33 O O33 ZT0 . . . F 3 15.436 3.825 0.968 1 22.25 ? O33 ZT0 1213 A 1 HETATM 34 O O34 ZT0 . . . F 3 9.315 1.744 1.641 1 25.3 ? O34 ZT0 1213 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #